Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
DMAP1	55929	genome.wustl.edu	37	1	44685535	44685535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034023.1	+1	reviewed	p.L346V	1.000	356	0%	151	55%	44	54.5%	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_DMAP1
ARHGAP29	9411	genome.wustl.edu	37	1	94674816	94674816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004815.3	-1	validated	p.G144E	1.000	315	0%	53	35.8%	23	17.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NFASC	23114	genome.wustl.edu	37	1	204943900	204943900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015090.3	+1	reviewed	p.A514T	1.000	194	0%	89	49.4%	2	100%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
C2orf61	285051	genome.wustl.edu	37	2	47378548	47378548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173649.2	-1	validated	p.P83L	0.001	1193	0.1%	237	18.1%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
MSH6	2956	genome.wustl.edu	37	2	48027952	48027952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000179.2	+1	reviewed	p.I944V	1.000	193	0%	28	42.9%	24	41.6%	benign(0.005)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00533,superfamily_DNA repair protein MutS domain III,HMMPfam_MutS_IV
MTIF2	4528	genome.wustl.edu	37	2	55470694	55470694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005369.1	-1	reviewed	p.H474Q	0.992	1075	0%	203	42.9%	35	48.5%	benign(0.127)	tolerated(0.17)	neutral(0.069)	NULL
FAM178B	51252	genome.wustl.edu	37	2	97626052	97626052	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122646.2	-1	validated	p.R255P	0.018	62	0%	32	18.8%	0	-	possibly_damaging(0.878)	tolerated(0.05)	deleterious(0.688)	NULL
TLK1	9874	genome.wustl.edu	37	2	171974262	171974262	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012290.4	-1	validated	p.S82N	1.000	414	0%	59	18.6%	20	20%	benign(0.045)	tolerated(0.08)	neutral(0.302)	NULL
USP37	57695	genome.wustl.edu	37	2	219399411	219399411	+	Silent	SNP	T	T	G	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020935.2	-1	validated	p.T233	1.000	605	0%	229	27.5%	2	100%	-	-	-	NULL
GRAMD1C	54762	genome.wustl.edu	37	3	113627947	113627947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017577.4	+1	validated	p.T311N	1.000	192	0%	42	19%	3	0%	benign(0.344)	tolerated(0.23)	neutral(0.150)	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178936093	178936093	+	Missense_Mutation	SNP	G	G	T	rs121913275		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.E545D	1.000	219	0%	59	28.8%	7	14.2%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
CC2D2A	57545	genome.wustl.edu	37	4	15529098	15529098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080522.2	+1	reviewed	p.H393R	0.881	344	0%	94	18.1%	13	23%	benign(0.001)	tolerated(0.81)	neutral(0.001)	NULL
EXOC1	55763	genome.wustl.edu	37	4	56759865	56759865	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024924.1	+1	reviewed	p.Q624	0.999	167	0%	43	20.9%	21	23.8%	-	-	-	HMMPfam_Sec3
SERPINB6	5269	genome.wustl.edu	37	6	2953314	2953314	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004568.4	-1	validated	p.K179	0.000	105	1%	65	55.4%	60	76.6%	-	-	-	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
CFB	629	genome.wustl.edu	37	6	31917235	31917236	+	Frame_Shift_Ins	INS	-	-	TGAA	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001710.5	+1	reviewed	p.I439fs	0.019:0.006	-	-	-	-	-	-	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ABCA13	154664	genome.wustl.edu	37	7	48407438	48407438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152701.3	+1	reviewed	p.T3579K	0.999	952	0.1%	114	14.9%	0	-	probably_damaging(0.957)	-	-	NULL
DOK2	9046	genome.wustl.edu	37	8	21766982	21766982	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003974.2	-1	reviewed	p.P360R	0.800	7	0.000	11	0.727	4	0%	benign(0.06)	deleterious(0.01)	neutral(0.410)	NULL
ANKRD18B	441459	genome.wustl.edu	37	9	33524338	33524339	+	Frame_Shift_Ins	INS	-	-	ATCGCGGGTTTGGGGGTGG	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001718334.2	+1	model	p.V125fs	0.562:0.557	-	-	-	-	-	-	-	-	-	superfamily_Ankyrin repeat
PTPN3	5774	genome.wustl.edu	37	9	112207525	112207525	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002829.3	-1	reviewed	p.V154E	0.999	253	0.4%	74	32.4%	12	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
ADARB2	105	genome.wustl.edu	37	10	1229278	1229278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018702.2	-1	reviewed	p.T692M	0.625	30	0%	77	58.4%	27	66.6%	benign(0.057)	tolerated(0.11)	neutral(0.275)	HMMPfam_A_deamin,HMMSmart_ADEAMc
SYT15	83849	genome.wustl.edu	37	10	46968621	46968621	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031912.3	-1	reviewed	p.P105	0.004	8	0.000	41	0.220	1	0%	-	-	-	NULL
SUPV3L1	6832	genome.wustl.edu	37	10	70947405	70947405	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003171.3	+1	provisional	p.A155	0.996	285	0%	93	37.6%	16	68.7%	-	-	-	superfamily_SSF52540
SORCS1	114815	genome.wustl.edu	37	10	108380256	108380256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013031.1	-1	reviewed	p.A909V	0.989	95	0%	39	43.6%	0	-	benign(0)	tolerated(0.62)	neutral(0.004)	HMMSmart_PKD
MICAL2	9645	genome.wustl.edu	37	11	12237782	12237782	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014632.2	+1	provisional	p.N288K	1.000	194	0%	85	18.8%	9	11.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FAD/NAD(P)-binding domain
ATL3	25923	genome.wustl.edu	37	11	63398769	63398769	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015459.3	-1	validated	p.F428L	1.000	203	0%	54	31.5%	36	19.4%	benign(0.016)	tolerated(0.32)	neutral(0.025)	superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
KRTAP5-10	387273	genome.wustl.edu	37	11	71249125	71249126	+	Splice_Site	INS	-	-	GGCTGTGGCTCCGGCTGTGGG	rs113379698		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000422553	+1	known	e2-1	0.490:0.775	-	-	-	-	-	-	-	-	-	-
ZNF384	171017	genome.wustl.edu	37	12	6777070	6777072	+	In_Frame_Del	DEL	TGC	TGC	-	rs3835029	byCluster;by1000genomes	TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135734.1	-1	reviewed	p.Q516in_frame_del	0.291:0.350:0.379	-	-	-	-	-	-	-	-	-	NULL
SLC2A14	144195	genome.wustl.edu	37	12	7985362	7985362	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153449.2	-1	provisional	p.F46V	1.000	229	0%	286	12.6%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
LRP6	4040	genome.wustl.edu	37	12	12284914	12284914	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002336.2	-1	reviewed	p.D1271H	1.000	113	0%	83	22.9%	79	18.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module
SLCO1C1	53919	genome.wustl.edu	37	12	20876187	20876187	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017435.4	+1	reviewed	p.I395	0.998	279	0%	114	59.6%	0	-	-	-	-	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
TM7SF3	51768	genome.wustl.edu	37	12	27156255	27156255	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016551.2	-1	validated	p.I54L	0.032	158	0%	91	24.2%	93	20.4%	benign(0.122)	tolerated(0.06)	neutral(0.333)	NULL
PTPRQ	374462	genome.wustl.edu	37	12	80933590	80933590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.D1007E	1.000	470	0%	61	57.4%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
DICER1	23405	genome.wustl.edu	37	14	95557629	95557629	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030621.3	-1	reviewed	p.E1813A	1.000	586	0%	101	54.5%	24	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ribonuclease_3,HMMSmart_RIBOc,superfamily_RNase_III
ATG2B	55102	genome.wustl.edu	37	14	96756142	96756142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018036.5	-1	validated	p.A1953T	1.000	316	0%	53	26.4%	15	26.6%	possibly_damaging(0.937)	tolerated(0.4)	neutral(0.399)	NULL
AGRP	181	genome.wustl.edu	37	16	67516695	67516695	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001138.1	-1	reviewed	p.P81	0.020	24	0%	15	40%	0	-	-	-	-	HMMPfam_Agouti,HMMSmart_Agouti
TP53	7157	genome.wustl.edu	37	17	7577124	7577124	+	Missense_Mutation	SNP	C	C	T	rs121912657		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.V272M	1.000	183	0%	51	82.4%	110	93.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_p53-like transcription factors,HMMPfam_P53
MPRIP	23164	genome.wustl.edu	37	17	17039562	17039564	+	In_Frame_Del	DEL	CAG	CAG	-	rs3833098	byCluster;by1000genomes	TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015134.2	+1	validated	p.S182in_frame_del	0.998:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RAI1	10743	genome.wustl.edu	37	17	17699686	17699686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030665.3	+1	reviewed	p.R1142C	0.983	5	0.000	30	0.467	75	62.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SCN4A	6329	genome.wustl.edu	37	17	62020211	62020211	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000334.4	-1	reviewed	p.F1421	0.994	80	0%	127	51.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CRTC1	23373	genome.wustl.edu	37	19	18886477	18886477	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098482.1	+1	validated	p.N529	0.591	5	0.000	9	1.000	26	96.1%	-	-	-	NULL
SARS2	54938	genome.wustl.edu	37	19	39421225	39421225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017827.3	-1	reviewed	p.G51D	1.000	11	0%	12	66.7%	35	60%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
PPP2R1A	5518	genome.wustl.edu	37	19	52716323	52716323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014225.5	+1	reviewed	p.S256F	1.000	21	0%	13	30.8%	478	51.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
SNTA1	6640	genome.wustl.edu	37	20	32000462	32000462	+	Silent	SNP	C	C	T	rs35938843	byCluster;byFrequency;by1000genomes	TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003098.2	-1	reviewed	p.K276	0.999	4	0.000	35	0.543	52	28.8%	-	-	-	NULL
SLC12A5	57468	genome.wustl.edu	37	20	44664475	44664475	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134771.1	+1	reviewed	p.G136	0.050	73	0%	94	47.9%	0	-	-	-	-	HMMPfam_AA_permease
ARFGEF2	10564	genome.wustl.edu	37	20	47605106	47605106	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006420.2	+1	reviewed	p.Y814N	1.000	113	0%	27	63%	7	85.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec7,HMMSmart_Sec7,superfamily_Sec7,superfamily_ARM-type_fold
SIK1	150094	genome.wustl.edu	37	21	44839786	44839786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173354.3	-1	validated	p.P358A	0.009	4	0.000	25	0.840	2	100%	benign(0.023)	tolerated(0.39)	neutral(0.017)	superfamily_Kinase_like
STARD8	9754	genome.wustl.edu	37	X	67941537	67941537	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142503.2	+1	reviewed	p.A803V	1.000	34	0%	70	42.9%	4	25%	possibly_damaging(0.801)	deleterious(0.03)	deleterious(0.666)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
STAG2	10735	genome.wustl.edu	37	X	123195681	123195681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.A532V	1.000	158	0%	71	40.8%	63	0%	possibly_damaging(0.525)	deleterious(0.04)	deleterious(0.526)	superfamily_ARM-type_fold
FMR1	2332	genome.wustl.edu	37	X	147024819	147024819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0M6-01	TCGA-BG-A0M6-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002024.5	+1	reviewed	p.G482S	1.000	236	0%	108	38.9%	110	0%	benign(0.019)	tolerated(0.25)	neutral(0.038)	NULL
