Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
HNRNPR	10236	genome.wustl.edu	37	1	23640197	23640197	+	Splice_Site	SNP	T	T	C	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102398.1	-1	reviewed	e8-2	1.000	127	0%	29	31%	0	-	-	-	-	-
MACF1	23499	genome.wustl.edu	37	1	39826512	39826512	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.R2538*	1.000	90	0%	13	30.8%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
ATF6	22926	genome.wustl.edu	37	1	161928344	161928344	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007348.2	+1	validated	p.R638fs	1.000	-	-	-	-	-	-	-	-	-	NULL
TSNAX	7257	genome.wustl.edu	37	1	231696950	231696950	+	Silent	SNP	T	T	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005999.2	+1	reviewed	p.I148	1.000	311	0%	39	28.2%	15	20%	-	-	-	HMMPfam_Translin,superfamily_Translin
HNRNPU	3192	genome.wustl.edu	37	1	245023703	245023703	+	Silent	SNP	A	A	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031844.2	-1	reviewed	p.A317	0.982	276	0%	282	35.1%	237	32.4%	-	-	-	NULL
SPEG	10290	genome.wustl.edu	37	2	220353828	220353828	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005876.4	+1	validated	p.N2734	0.694	11	0%	56	32.1%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CACNA1D	776	genome.wustl.edu	37	3	53752758	53752758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000720.2	+1	validated	p.R510W	1.000	26	0%	66	37.9%	0	-	possibly_damaging(0.905)	deleterious(0.02)	deleterious(0.742)	superfamily_SSF81324
SLITRK3	22865	genome.wustl.edu	37	3	164906467	164906467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014926.2	-1	validated	p.G718R	0.596	54	0%	15	33.3%	0	-	possibly_damaging(0.485)	tolerated(0.09)	neutral(0.458)	NULL
ZBBX	79740	genome.wustl.edu	37	3	167000093	167000093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024687.2	-1	validated	p.D690E	0.001	427	0%	64	39.1%	5	0%	benign(0.001)	tolerated(0.35)	neutral(0.021)	NULL
ACOX3	8310	genome.wustl.edu	37	4	8368786	8368786	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003501.2	-1	validated	p.A669T	0.000	60	0%	56	41.1%	30	26.6%	benign(0.003)	tolerated(0.78)	neutral(0.001)	HMMPfam_ACOX,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
TARS	6897	genome.wustl.edu	37	5	33453447	33453447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152295.3	+1	reviewed	p.D128G	1.000	97	0%	49	36.7%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TGS,superfamily_TGS-like
PIK3R1	5295	genome.wustl.edu	37	5	67591136	67591141	+	In_Frame_Del	DEL	AGAGAC	AGAGAC	-	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	AGAGAC	AGAGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.RD577in_frame_del	0.975:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PCDHA7	56141	genome.wustl.edu	37	5	140215138	140215138	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.T390	0.000	49	0%	74	44.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FGFR4	2264	genome.wustl.edu	37	5	176517988	176517988	+	Silent	SNP	A	A	G	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002011.3	+1	reviewed	p.V162	0.995	112	0%	67	50.7%	9	77.7%	-	-	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
ZFP2	80108	genome.wustl.edu	37	5	178359647	178359647	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030613.2	+1	provisional	p.K445E	1.000	190	0%	50	36%	1	100%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CD83	9308	genome.wustl.edu	37	6	14135349	14135349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004233.3	+1	validated	p.R167Q	0.722	127	0%	42	40.5%	16	56.2%	benign(0.29)	tolerated(0.38)	neutral(0.107)	NULL
TFAP2B	7021	genome.wustl.edu	37	6	50807914	50807914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003221.3	+1	reviewed	p.T329M	1.000	113	0%	108	50.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TF_AP-2
FRK	2444	genome.wustl.edu	37	6	116264288	116264288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002031.2	-1	reviewed	p.A401T	1.000	273	0%	65	40%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
COL28A1	340267	genome.wustl.edu	37	7	7472129	7472129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037763.2	-1	validated	p.R658H	0.989	243	0.4%	28	35.7%	2	100%	benign(0.004)	tolerated(0.11)	neutral(0.272)	NULL
PXDNL	137902	genome.wustl.edu	37	8	52339270	52339270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.G525V	0.964	600	0%	72	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PDP1	54704	genome.wustl.edu	37	8	94935750	94935750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018444.3	+1	reviewed	p.G488D	1.000	72	0%	70	35.7%	18	77.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
TRPM6	140803	genome.wustl.edu	37	9	77457246	77457246	+	Missense_Mutation	SNP	G	G	C	rs121912624		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.R56G	0.975	357	0%	103	34%	0	-	unknown(0)	deleterious(0.04)	-	NULL
ZNF618	114991	genome.wustl.edu	37	9	116811597	116811597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133374.2	+1	validated	p.A579V	1.000	10	0.000	9	0.778	9	55.5%	probably_damaging(0.978)	tolerated(0.55)	neutral(0.427)	NULL
COL27A1	85301	genome.wustl.edu	37	9	117047052	117047052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032888.2	+1	validated	p.E1328K	0.998	32	0%	52	38.5%	13	30.7%	unknown(0)	tolerated(0.73)	-	NULL
CARD9	64170	genome.wustl.edu	37	9	139261276	139261276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052813.4	-1	reviewed	p.E445K	1.000	6	0.000	70	0.414	5	40%	possibly_damaging(0.946)	tolerated(0.09)	deleterious(0.686)	NULL
GPR158	57512	genome.wustl.edu	37	10	25886793	25886793	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020752.2	+1	validated	p.S746	0.009	80	1.3%	48	25%	0	-	-	-	-	NULL
CDHR1	92211	genome.wustl.edu	37	10	85974275	85974275	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033100.2	+1	reviewed	p.P826	0.000	37	0%	50	16%	1	100%	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692798	89692798	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.P95fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89712001	89712001	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.S207fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
FGFR2	2263	genome.wustl.edu	37	10	123247516	123247516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.K660E	1.000	458	0%	101	17.8%	68	26.4%	probably_damaging(0.967)	deleterious(0)	deleterious(0.853)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
FGFR2	2263	genome.wustl.edu	37	10	123258070	123258070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.M538I	1.000	247	0%	89	22.5%	88	27.2%	possibly_damaging(0.784)	deleterious(0.01)	deleterious(0.699)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
OR8I2	120586	genome.wustl.edu	37	11	55861593	55861593	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003750.1	+1	provisional	p.A270	0.001	76	0%	22	31.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LOC728196	728196	genome.wustl.edu	37	11	111383756	111383756	+	RNA	SNP	G	G	A	rs72550778	byFrequency;by1000genomes	TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_040780.2	+1	model	NULL	0.514	7	0.000	32	0.406	0	-	-	-	-	-
SIK3	23387	genome.wustl.edu	37	11	116729044	116729044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025164.3	-1	validated	p.R940K	1.000	62	0%	33	45.5%	11	54.5%	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	NULL
LEPREL2	10536	genome.wustl.edu	37	12	6938023	6938024	+	Frame_Shift_Ins	INS	-	-	G	rs112583020	byCluster;by1000genomes	TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000290510	+1	known	p.R141fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MLL2	8085	genome.wustl.edu	37	12	49440427	49440427	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.L1462fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
APAF1	317	genome.wustl.edu	37	12	99053093	99053093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181861.1	+1	reviewed	p.R228C	1.000	123	0%	99	35.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NB-ARC,superfamily_WD40 repeat-like,superfamily_P-loop containing nucleoside triphosphate hydrolases
USP12	219333	genome.wustl.edu	37	13	27669856	27669856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182488.2	-1	provisional	p.R152H	1.000	535	0%	76	42.1%	4	50%	benign(0.158)	tolerated(0.06)	neutral(0.337)	HMMPfam_UCH,superfamily_SSF54001
HSP90AA1	3320	genome.wustl.edu	37	14	102550273	102550273	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017963.2	-1	validated	p.S521T	1.000	218	0%	145	37.2%	412	41%	possibly_damaging(0.83)	deleterious(0)	deleterious(0.760)	superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_HSP90
FAM189A1	23359	genome.wustl.edu	37	15	29415617	29415617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015307.1	-1	validated	p.M515I	0.106	9	0.000	62	0.403	0	-	benign(0)	tolerated(1)	-	NULL
TNFRSF13B	23495	genome.wustl.edu	37	17	16843751	16843751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012452.2	-1	reviewed	p.V174I	0.908	10	0%	26	50%	0	-	benign(0)	tolerated(1)	-	NULL
CDC27	996	genome.wustl.edu	37	17	45219311	45219311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114091.1	-1	reviewed	p.I493V	1.000	106	2.8%	61	24.6%	5	0%	benign(0.002)	tolerated(0.86)	neutral(0.001)	superfamily_TPR-like
ONECUT2	9480	genome.wustl.edu	37	18	55143729	55143729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004852.2	+1	reviewed	p.R430H	1.000	46	2.2%	11	45.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
ZNF554	115196	genome.wustl.edu	37	19	2827635	2827635	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102651.1	+1	validated	p.D49	0.985	103	0%	74	27%	3	66.6%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
FBN3	84467	genome.wustl.edu	37	19	8181660	8181660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032447.3	-1	reviewed	p.P1204T	1.000	42	0%	29	27.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
PRKCSH	5589	genome.wustl.edu	37	19	11558340	11558341	+	In_Frame_Ins	INS	-	-	GAG	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002743.2	+1	reviewed	p.316in_frame_insE	0.001:0.997	-	-	-	-	-	-	-	-	-	NULL
ELAVL3	1995	genome.wustl.edu	37	19	11569297	11569297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001420.3	-1	reviewed	p.R155C	1.000	36	0%	58	15.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ZNF566	84924	genome.wustl.edu	37	19	36940118	36940118	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145343.1	-1	validated	p.E341K	0.866	286	0%	36	41.7%	2	50%	probably_damaging(0.995)	tolerated(0.18)	deleterious(0.514)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF551	90233	genome.wustl.edu	37	19	58199629	58199629	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138347.3	+1	validated	p.R646	0.000	234	0%	38	44.7%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TPTE	7179	genome.wustl.edu	37	21	10914442	10914442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.R426H	0.329	1070	0%	69	17.4%	0	-	possibly_damaging(0.82)	tolerated(0.2)	neutral(0.359)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
TTC38	55020	genome.wustl.edu	37	22	46677541	46677541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017931.2	+1	validated	p.A221T	0.998	47	0%	71	40.8%	16	31.2%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_SSF48452
IRS4	8471	genome.wustl.edu	37	X	107975876	107975876	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003604.2	-1	reviewed	p.N1233	0.000	75	1.3%	78	48.7%	0	-	-	-	-	NULL
L1CAM	3897	genome.wustl.edu	37	X	153135017	153135017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0MS-01	TCGA-BG-A0MS-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000425.3	-1	reviewed	p.R409W	1.000	18	0%	49	49%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
