Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ARHGEF10L	55160	genome.wustl.edu	37	1	17944934	17944934	+	Missense_Mutation	SNP	C	C	T	rs139656107	by1000genomes	TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000375408	+1	known	p.A29V	0.981	1	0.000	4	1.000	1	0%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	NULL
ARID1A	8289	genome.wustl.edu	37	1	27105754	27105754	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.A1789fs	1.000	-	-	-	-	-	-	-	-	-	NULL
TTC4	7268	genome.wustl.edu	37	1	55197305	55197305	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004623.3	+1	validated	p.W276C	1.000	205	0%	154	23.4%	23	47.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA0907	22889	genome.wustl.edu	37	1	155895439	155895439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014949.2	-1	predicted	p.M293V	1.000	128	0%	138	33.3%	15	33.3%	possibly_damaging(0.897)	deleterious(0.01)	deleterious(0.760)	superfamily_Eukaryotic type KH-domain (KH-domain type I)
KIAA1614	57710	genome.wustl.edu	37	1	180885673	180885673	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020950.1	+1	validated	p.Q145P	0.985	39	0%	60	28.3%	0	-	possibly_damaging(0.901)	deleterious(0)	deleterious(0.801)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247021085	247021085	+	Silent	SNP	G	G	A	rs41308162	byCluster;byFrequency;by1000genomes	TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015446.4	-1	validated	p.L1388	0.011	233	0%	253	28.5%	14	78.5%	-	-	-	NULL
PROKR1	10887	genome.wustl.edu	37	2	68882334	68882334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138964.2	+1	validated	p.E270K	1.000	92	0%	109	45%	0	-	benign(0.019)	deleterious(0.02)	neutral(0.384)	HMMPfam_7tm_1,superfamily_SSF81321
TTN	7273	genome.wustl.edu	37	2	179396559	179396559	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000356127	-1	known	p.Y32358F	1.000	149	0%	93	30.1%	0	-	benign(0.002)	-	-	NULL
MCM2	4171	genome.wustl.edu	37	3	127325477	127325477	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000491422	+1	known	p.S169F	1.000	48	0%	45	24.4%	52	38.4%	-	-	-	HMMSmart_SM00350,superfamily_Nucleic acid-binding proteins
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279	byCluster	TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.H1047L	1.000	192	0%	82	36.6%	21	47.6%	possibly_damaging(0.815)	tolerated(1)	neutral(0.307)	HMMSmart_PI3Kc,superfamily_Kinase_like
FBXW7	55294	genome.wustl.edu	37	4	153247375	153247375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033632.2	-1	reviewed	p.S476I	1.000	98	0%	72	27.8%	17	52.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
RPL37	6167	genome.wustl.edu	37	5	40834271	40834271	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508493	-1	known	p.Y79C	0.000	385	0%	407	35.6%	0	-	benign(0.036)	deleterious(0.04)	neutral(0.351)	NULL
ADAMTS6	11174	genome.wustl.edu	37	5	64510497	64510497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000261306	-1	known	p.C850Y	1.000	24	0%	19	47.4%	1	0%	benign(0.201)	tolerated(0.07)	neutral(0.338)	NULL
PCDHA13	56136	genome.wustl.edu	37	5	140263890	140263890	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018904.2	+1	reviewed	p.S679	0.000	42	0%	51	29.4%	0	-	-	-	-	NULL
AFAP1L1	134265	genome.wustl.edu	37	5	148687035	148687035	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152406.2	+1	validated	p.P202	0.927	100	0%	93	41.9%	2	0%	-	-	-	NULL
FAT2	2196	genome.wustl.edu	37	5	150911349	150911349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.V3204I	0.984	58	0%	57	26.3%	0	-	possibly_damaging(0.934)	tolerated(0.38)	neutral(0.398)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
HLA-DRB5	3127	genome.wustl.edu	37	6	32487315	32487315	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002125.3	-1	reviewed	p.R162W	0.144	61	0%	43	34.9%	223	7.6%	benign(0.013)	deleterious(0)	neutral(0.445)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
TMEM151B	441151	genome.wustl.edu	37	6	44243324	44243324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137560.1	+1	validated	p.A254V	1.000	58	0%	40	47.5%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
POM121L12	285877	genome.wustl.edu	37	7	53103660	53103660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182595.3	+1	validated	p.R99H	0.002	14	0%	18	50%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
SLC25A13	10165	genome.wustl.edu	37	7	95775914	95775914	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014251.2	-1	reviewed	p.S469I	1.000	57	0%	53	41.5%	28	35.7%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
AHCYL2	23382	genome.wustl.edu	37	7	129045047	129045047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015328.2	+1	validated	p.L379I	1.000	238	0%	242	15.3%	7	57.1%	benign(0.027)	tolerated(0.46)	neutral(0.013)	HMMPfam_AdoHcyase,HMMPfam_AdoHcyase_NAD,superfamily_NAD(P)-bd,superfamily_SSF52283
CSMD1	64478	genome.wustl.edu	37	8	2966164	2966164	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033225.5	-1	validated	p.D2240N	1.000	210	0%	285	29.1%	0	-	benign(0.184)	tolerated(0.06)	neutral(0.340)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
UNC5D	137970	genome.wustl.edu	37	8	35544126	35544126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080872.2	+1	validated	p.R328Q	0.973	185	0%	210	30.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
RAD21	5885	genome.wustl.edu	37	8	117859871	117859871	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006265.2	-1	reviewed	p.T588	0.941	209	0%	177	28.2%	89	40.4%	-	-	-	HMMPfam_Rad21_Rec8
CUBN	8029	genome.wustl.edu	37	10	16996473	16996473	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081.3	-1	reviewed	p.I1590	0.996	89	0%	67	31.3%	1	100%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PLAU	5328	genome.wustl.edu	37	10	75674570	75674570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002658.3	+1	reviewed	p.A289V	0.992	152	0%	137	35.8%	52	26.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130Q	1.000	329	0.3%	218	28%	35	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720768	89720771	+	Frame_Shift_Del	DEL	GAGC	GAGC	-	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	GAGC	GAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.E307fs	1.000:1.000:0.996:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
OR52I2	143502	genome.wustl.edu	37	11	4608296	4608296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005170.2	+1	validated	p.R85Q	0.166	625	0.2%	354	10.5%	0	-	benign(0.002)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
SYT9	143425	genome.wustl.edu	37	11	7439352	7439352	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175733.3	+1	validated	p.Y444H	1.000	146	0%	121	26.4%	0	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
FIBIN	387758	genome.wustl.edu	37	11	27016617	27016617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203371.1	+1	validated	p.G182W	1.000	79	0%	87	34.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
OR5B17	219965	genome.wustl.edu	37	11	58126418	58126418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005489.1	-1	validated	p.G42E	0.000	104	0%	44	13.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
ZP1	22917	genome.wustl.edu	37	11	60642715	60642715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207341.2	+1	validated	p.P590S	0.000	32	0%	35	48.6%	0	-	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
NADSYN1	55191	genome.wustl.edu	37	11	71174500	71174500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018161.4	+1	validated	p.R96C	1.000	100	0%	115	27.8%	30	40%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_CN_hydrolase,superfamily_Carbon-nitrogen hydrolase
CS	1431	genome.wustl.edu	37	12	56669883	56669883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004077.2	-1	reviewed	p.A229T	1.000	302	0%	318	30.5%	139	51.7%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_Citrate_synt,superfamily_Citrate_synthase_core
MYO1H	283446	genome.wustl.edu	37	12	109834218	109834218	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101421.3	+1	provisional	p.M91R	1.000	132	0%	123	33.3%	0	-	benign(0.119)	deleterious(0.01)	neutral(0.415)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM132D	121256	genome.wustl.edu	37	12	130184852	130184852	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133448.2	-1	validated	p.D157	0.012	46	0%	66	51.5%	0	-	-	-	-	NULL
FZD10	11211	genome.wustl.edu	37	12	130648444	130648444	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007197.2	+1	reviewed	p.F319	0.997	109	0.9%	93	26.9%	7	71.4%	unknown(0)	-	-	HMMPfam_Frizzled
DYNC1H1	1778	genome.wustl.edu	37	14	102486378	102486378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001376.4	+1	reviewed	p.R2831H	1.000	223	0%	201	36.3%	42	40.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52540
LOC283685	283685	genome.wustl.edu	37	15	23685144	23685144	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343322.1	-1	model	p.E678G	0.003	34	2.9%	35	20%	0	-	-	-	-	NULL
C15orf42	90381	genome.wustl.edu	37	15	90167984	90167984	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152259.3	+1	validated	p.N1481	0.000	151	0%	130	37.7%	7	14.2%	-	-	-	NULL
SEC14L5	9717	genome.wustl.edu	37	16	5041909	5041909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014692.1	+1	validated	p.T182M	0.352	83	0%	86	34.9%	1	100%	probably_damaging(0.987)	deleterious(0.05)	deleterious(0.782)	NULL
ZNF778	197320	genome.wustl.edu	37	16	89291210	89291211	+	Frame_Shift_Ins	INS	-	-	GTGA	rs113560259	byCluster;by1000genomes	TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000306502	+1	known	p.E40fs	0.001:0.001	-	-	-	-	-	-	-	-	-	NULL
GSDMA	284110	genome.wustl.edu	37	17	38122078	38122078	+	Silent	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178171.4	+1	validated	p.T46	0.009	85	0%	104	33.7%	0	-	-	-	-	HMMPfam_Gasdermin
SYNGR2	9144	genome.wustl.edu	37	17	76167605	76167605	+	Silent	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004710.3	+1	reviewed	p.L118	1.000	181	0%	139	34.5%	308	38.6%	-	-	-	HMMPfam_MARVEL
ANKRD30B	374860	genome.wustl.edu	37	18	14831449	14831449	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.T829S	0.207	177	0%	164	28.7%	0	-	benign(0.073)	tolerated(0.13)	neutral(0.258)	NULL
DOCK6	57572	genome.wustl.edu	37	19	11347106	11347106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020812.2	-1	validated	p.E770K	1.000	50	0%	55	34.5%	15	46.6%	possibly_damaging(0.947)	tolerated(0.07)	deleterious(0.710)	NULL
MEGF8	1954	genome.wustl.edu	37	19	42857113	42857113	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001410.2	+1	validated	p.S1061R	0.038	64	0%	74	24.3%	9	22.2%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_EGF
SYT3	84258	genome.wustl.edu	37	19	51128445	51128445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032298.2	-1	validated	p.V561M	0.999	33	0%	31	38.7%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_C2,superfamily_C2_CaLB
SLCO4A1	28231	genome.wustl.edu	37	20	61303148	61303148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016354.3	+1	validated	p.P691L	0.715	80	0%	91	27.5%	3	33.3%	possibly_damaging(0.53)	deleterious(0)	deleterious(0.623)	NULL
RIMBP3	85376	genome.wustl.edu	37	22	20458045	20458045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015672.1	-1	validated	p.P1086L	0.995	288	0%	374	11%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_Fibronectin type III
ENSG00000210082	0	genome.wustl.edu	37	MT	2652	2652	+	RNA	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387347	+1	known	NULL	NULL	54	0%	94	67%	3942	76.5%	-	-	-	-
BMP15	9210	genome.wustl.edu	37	X	50653946	50653946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005448.2	+1	reviewed	p.E55K	0.002	102	0%	101	38.6%	0	-	benign(0.001)	tolerated(1)	-	NULL
F8	2157	genome.wustl.edu	37	X	154182236	154182236	+	Missense_Mutation	SNP	G	G	A	rs137852428		TCGA-BK-A0CA-01	TCGA-BK-A0CA-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.R612C	0.999	364	0%	381	33.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cupredoxins
