Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
IPP	3652	genome.wustl.edu	37	1	46211848	46211848	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005897.2	-1	reviewed	p.P79L	1.000	159	0%	226	10.6%	0	-	benign(0.002)	tolerated(0.32)	neutral(0.024)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
COL11A1	1301	genome.wustl.edu	37	1	103496724	103496724	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080629.2	-1	reviewed	p.C243F	1.000	210	0%	209	14.4%	0	-	unknown(0)	deleterious(0)	-	superfamily_ConA_like_lec_gl
CD5L	922	genome.wustl.edu	37	1	157805830	157805830	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005894.2	-1	validated	p.D57	0.000	132	0%	85	10.6%	0	-	-	-	-	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like
OR10X1	128367	genome.wustl.edu	37	1	158549479	158549479	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004477.1	-1	provisional	p.L71I	0.988	200	0%	218	22.5%	0	-	possibly_damaging(0.948)	deleterious(0)	deleterious(0.836)	HMMPfam_7tm_1,superfamily_SSF81321
TNN	63923	genome.wustl.edu	37	1	175086107	175086107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.R718W	0.002	70	0%	79	27.8%	0	-	probably_damaging(0.994)	deleterious(0.05)	deleterious(0.797)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TDRD5	163589	genome.wustl.edu	37	1	179562901	179562901	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173533.2	+1	provisional	p.N180S	0.520	301	0%	350	12.3%	0	-	benign(0.002)	tolerated(0.55)	neutral(0.007)	NULL
OR2L3	391192	genome.wustl.edu	37	1	248224010	248224010	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004687.1	+1	provisional	p.T9	0.240	492	0%	604	19%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
OR2T35	403244	genome.wustl.edu	37	1	248802195	248802195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001827.1	-1	provisional	p.R122H	0.974	239	0%	207	22.7%	0	-	possibly_damaging(0.661)	deleterious(0.01)	deleterious(0.639)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
ENSG00000234936	0	genome.wustl.edu	37	2	43459902	43459902	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423354	+1	known	NULL	1.000	105	0%	96	32.3%	45	53.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	-
CCDC142	84865	genome.wustl.edu	37	2	74708388	74708388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032779.3	-1	validated	p.R407Q	0.000	168	0%	177	16.9%	1	0%	benign(0.011)	tolerated(0.37)	neutral(0.019)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112621363	112621363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022662.2	-1	validated	p.P314L	0.985	393	0%	403	38.2%	3	66.6%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
TNFAIP6	7130	genome.wustl.edu	37	2	152222595	152222595	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007115.2	+1	reviewed	p.W86C	1.000	366	0%	410	18.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,superfamily_C-type lectin-like
CXCR2	3579	genome.wustl.edu	37	2	218999763	218999763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001557.3	+1	reviewed	p.R80H	0.465	195	0%	158	20.9%	0	-	benign(0.2)	tolerated(0.12)	neutral(0.280)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CTNNB1	1499	genome.wustl.edu	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.D32N	1.000	112	0%	124	44.4%	53	41.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RABL3	285282	genome.wustl.edu	37	3	120424908	120424908	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173825.3	-1	validated	p.R108G	1.000	233	0%	295	14.6%	3	0%	benign(0.159)	tolerated(0.27)	neutral(0.048)	superfamily_SSF52540
DNAJC13	23317	genome.wustl.edu	37	3	132213061	132213061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015268.3	+1	validated	p.D1300G	1.000	245	0%	303	21.8%	1	0%	benign(0.406)	deleterious(0.01)	deleterious(0.536)	HMMSmart_SM00271,superfamily_ARM repeat
LOC647309	647309	genome.wustl.edu	37	3	190573146	190573147	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342387.1	-1	model	p.A74fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
GRID2	2895	genome.wustl.edu	37	4	94145885	94145885	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001510.2	+1	validated	p.P362S	1.000	142	0%	171	16.4%	0	-	possibly_damaging(0.864)	deleterious(0.01)	deleterious(0.740)	HMMPfam_ANF_receptor,superfamily_SSF53822
IL31RA	133396	genome.wustl.edu	37	5	55206466	55206466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139017.4	+1	validated	p.N536K	0.082	177	0%	210	37.6%	0	-	possibly_damaging(0.948)	deleterious(0.02)	deleterious(0.774)	HMMPfam_fn3
PIK3R1	5295	genome.wustl.edu	37	5	67589635	67589646	+	In_Frame_Del	DEL	ATATGAAGAATA	ATATGAAGAATA	-	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	ATATGAAGAATA	ATATGAAGAATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.LYEEY466in_frame_delF	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.970:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CYP39A1	51302	genome.wustl.edu	37	6	46593168	46593168	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016593.3	-1	reviewed	p.V306	1.000	346	0%	439	20.5%	10	20%	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
EYS	346007	genome.wustl.edu	37	6	66205222	66205222	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.L28M	0.000	155	0%	161	39.8%	0	-	benign(0.14)	-	-	NULL
FGFR1OP	11116	genome.wustl.edu	37	6	167413575	167413575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007045.2	+1	reviewed	p.A44T	1.000	337	0%	438	18.9%	6	16.6%	possibly_damaging(0.88)	deleterious(0.03)	deleterious(0.708)	NULL
INTS1	26173	genome.wustl.edu	37	7	1510582	1510582	+	Silent	SNP	G	G	A	rs187219281	by1000genomes	TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080453.2	-1	validated	p.A2119	0.729	60	0%	51	19.6%	225	42.2%	-	-	-	NULL
ZNF117	51351	genome.wustl.edu	37	7	64437573	64437573	+	Silent	SNP	C	C	G	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398695	-1	known	p.L288	0.000	30	0%	46	19.6%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ADAM18	8749	genome.wustl.edu	37	8	39587427	39587427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014237.1	+1	reviewed	p.V730I	0.006	312	0%	509	38.1%	0	-	benign(0.429)	tolerated(0.56)	neutral(0.146)	NULL
CSMD3	114788	genome.wustl.edu	37	8	114186127	114186127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.C178F	1.000	107	0%	166	50.6%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
LRRC24	441381	genome.wustl.edu	37	8	145748668	145748668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024678.3	-1	validated	p.Q245K	0.993	21	0%	16	25%	20	10%	benign(0.033)	tolerated(0.79)	neutral(0.003)	HMMPfam_LRRCT,HMMSmart_SM00082,superfamily_L domain-like
PTPRD	5789	genome.wustl.edu	37	9	8517855	8517855	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002839.3	-1	reviewed	p.Q512H	1.000	222	0%	247	23.5%	0	-	probably_damaging(0.954)	deleterious(0.03)	deleterious(0.762)	HMMSmart_SM00409,superfamily_Fibronectin type III
TRPM6	140803	genome.wustl.edu	37	9	77343207	77343207	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017662.4	-1	reviewed	p.N1961K	1.000	249	0%	294	27.2%	0	-	probably_damaging(0.965)	tolerated(1)	neutral(0.407)	HMMPfam_Alpha_kinase,HMMSmart_SM00811,superfamily_Protein kinase-like (PK-like)
GNAQ	2776	genome.wustl.edu	37	9	80409502	80409502	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002072.2	-1	provisional	p.V204	1.000	207	0.5%	248	21.4%	2	50%	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF483	158399	genome.wustl.edu	37	9	114304149	114304149	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133464.2	+1	validated	p.K312*	0.351	98	0%	145	20.7%	1	100%	-	-	-	NULL
FAM208B	54906	genome.wustl.edu	37	10	5772839	5772839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017782.4	+1	validated	p.G293R	0.955	323	0%	491	12%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26414368	26414368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017433.4	+1	reviewed	p.A649S	1.000	165	0%	226	19.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
TNKS2	80351	genome.wustl.edu	37	10	93619366	93619366	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025235.3	+1	validated	p.C1081F	1.000	226	0%	354	44.1%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PARP,superfamily_SSF56399
GPHA2	170589	genome.wustl.edu	37	11	64702498	64702498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130769.3	-1	validated	p.V85I	0.620	66	0%	50	12%	0	-	benign(0.002)	tolerated(0.22)	neutral(0.042)	NULL
EHBP1L1	254102	genome.wustl.edu	37	11	65359507	65359507	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099409.1	+1	validated	p.S1473L	0.998	35	0%	28	25%	56	48.2%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
FADD	8772	genome.wustl.edu	37	11	70052362	70052362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003824.3	+1	reviewed	p.L137Q	0.025	103	0%	76	36.8%	22	36.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Death,HMMSmart_DEATH,superfamily_DEATH_like
MMP3	4314	genome.wustl.edu	37	11	102709957	102709957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002422.3	-1	reviewed	p.S318Y	0.021	172	0%	210	35.7%	0	-	benign(0)	tolerated(0.59)	neutral(0.004)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
KIRREL3	84623	genome.wustl.edu	37	11	126318983	126318983	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032531.3	-1	reviewed	p.T306	0.635	130	0%	111	25.2%	0	-	-	-	-	superfamily_Immunoglobulin
CHD4	1108	genome.wustl.edu	37	12	6702659	6702659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001273.2	-1	reviewed	p.R813C	1.000	177	0%	184	32.1%	7	71.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
H1FNT	341567	genome.wustl.edu	37	12	48723324	48723324	+	Nonsense_Mutation	SNP	C	C	T	rs2732441	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181788.1	+1	provisional	p.R84*	0.005	34	0%	21	38.1%	0	-	-	-	-	NULL
PTPRB	5787	genome.wustl.edu	37	12	70932782	70932782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109754.1	-1	reviewed	p.V1931M	1.000	150	0%	247	36.4%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ALDH1L2	160428	genome.wustl.edu	37	12	105420370	105420370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034173.3	-1	reviewed	p.A890V	1.000	211	0%	288	26%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Aldedh,superfamily_ALDH-like
LOC100289447	100289447	genome.wustl.edu	37	13	113795330	113795330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344234.1	-1	model	p.G384C	0.021	40	0%	29	41.4%	1	0%	-	-	-	NULL
LRRC16B	90668	genome.wustl.edu	37	14	24529965	24529965	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138360.3	+1	validated	p.A730	1.000	79	0%	76	15.8%	0	-	-	-	-	NULL
MAX	4149	genome.wustl.edu	37	14	65543378	65543378	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002382.3	-1	reviewed	p.R100H	1.000	162	0%	138	25.4%	41	46.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C15orf2	23742	genome.wustl.edu	37	15	24921899	24921899	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018958.2	+1	reviewed	p.P295	0.004	24	0%	14	35.7%	0	-	-	-	-	NULL
AGBL1	123624	genome.wustl.edu	37	15	86838559	86838559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152336.2	+1	validated	p.T719M	0.998	121	0%	154	35.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
SOLH	6650	genome.wustl.edu	37	16	601518	601518	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005632.2	+1	reviewed	p.L733	1.000	32	0%	26	34.6%	13	46.1%	-	-	-	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
CTCF	10664	genome.wustl.edu	37	16	67655479	67655479	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.R448*	1.000	162	0%	238	16%	8	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CTCF	10664	genome.wustl.edu	37	16	67662303	67662303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.H517Y	1.000	129	0%	144	22.2%	18	55.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FADS6	283985	genome.wustl.edu	37	17	72877285	72877285	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178128.3	-1	validated	p.G213	1.000	63	0%	56	33.9%	0	-	-	-	-	HMMPfam_FA_desaturase
CYP4F11	57834	genome.wustl.edu	37	19	16024555	16024555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128932.1	-1	reviewed	p.A521V	0.010	90	0%	84	36.9%	22	95.4%	benign(0)	tolerated(0.3)	neutral(0.029)	NULL
LMTK3	114783	genome.wustl.edu	37	19	49001282	49001282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080434.1	-1	provisional	p.T1044M	0.624	75	0%	65	38.5%	8	37.5%	unknown(0)	deleterious(0)	-	HMMSmart_SM00220
PRMT1	3276	genome.wustl.edu	37	19	50191498	50191498	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001536.3	+1	validated	p.R371H	1.000	25	0%	21	28.6%	711	40.5%	benign(0.123)	deleterious(0)	neutral(0.455)	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ZNF471	57573	genome.wustl.edu	37	19	57036157	57036157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020813.2	+1	validated	p.K241E	1.000	105	0%	132	31.1%	1	0%	possibly_damaging(0.837)	deleterious(0)	deleterious(0.764)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SLC5A3	6526	genome.wustl.edu	37	21	35468005	35468005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006933.4	+1	validated	p.A170T	1.000	101	0%	147	16.3%	2	0%	possibly_damaging(0.6)	deleterious(0.01)	deleterious(0.613)	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1
APOL1	8542	genome.wustl.edu	37	22	36651022	36651023	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145343.2	+1	reviewed	p.R24fs	0.005:0.002	-	-	-	-	-	-	-	-	-	NULL
ENSG00000210082	0	genome.wustl.edu	37	MT	1791	1791	+	RNA	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000387347	+1	known	NULL	NULL	7	0.000	8	0.875	8025	92.4%	-	-	-	-
SMS	6611	genome.wustl.edu	37	X	22003307	22003307	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004595.2	+1	reviewed	p.K304I	1.000	290	0%	423	18.9%	67	0%	benign(0.168)	deleterious(0.05)	neutral(0.360)	HMMPfam_Spermine_synth,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
LRCH2	57631	genome.wustl.edu	37	X	114398300	114398300	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020871.3	-1	validated	p.K468*	1.000	567	0%	653	11.9%	0	-	-	-	-	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114426989	114426989	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145346.1	+1	validated	p.S995	0.160	49	0%	39	25.6%	0	-	-	-	-	NULL
FMR1NB	158521	genome.wustl.edu	37	X	147106466	147106466	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152578.2	+1	validated	p.K238N	0.000	446	0%	548	21.7%	0	-	probably_damaging(0.994)	tolerated(0.46)	neutral(0.464)	NULL
F8	2157	genome.wustl.edu	37	X	154130383	154130383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0T9-01	TCGA-BS-A0T9-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000132.3	-1	reviewed	p.L2020F	0.991	298	0%	288	37.8%	0	-	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	PatternScan_MULTICOPPER_OXIDASE1,superfamily_Cupredoxins,HMMPfam_Cu-oxidase_2
