Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
ISG15	9636	genome.wustl.edu	37	1	949538	949538	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005101.3	+1	validated	p.L60I	0.728	21	0%	21	38.1%	-	-	probably_damaging(0.989)	tolerated(0.11)	deleterious(0.711)	HMMPfam_ubiquitin,HMMSmart_UBQ,superfamily_SSF54236
TPRG1L	127262	genome.wustl.edu	37	1	3545119	3545119	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182752.3	+1	validated	p.N257	0.948	88	0%	115	20.9%	-	-	-	-	-	NULL
SPSB1	80176	genome.wustl.edu	37	1	9416287	9416287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025106.3	+1	validated	p.A113T	1.000	30	0%	22	22.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SPRY,HMMSmart_SPRY
PIK3CD	5293	genome.wustl.edu	37	1	9778877	9778877	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005026.3	+1	validated	p.C382	0.932	36	0%	34	29.4%	-	-	-	-	-	HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
ENSG00000199562	0	genome.wustl.edu	37	1	10359129	10359131	+	RNA	DEL	AAA	AAA	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362692	+1	known	NULL	0.024:0.022	-	-	-	-	-	-	-	-	-	-
CLCN6	1185	genome.wustl.edu	37	1	11879551	11879551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001286.2	+1	reviewed	p.L96I	1.000	493	0%	434	20.5%	-	-	benign(0.287)	tolerated(0.16)	neutral(0.148)	superfamily_Clc chloride channel
CLCNKB	1188	genome.wustl.edu	37	1	16382198	16382198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000085.3	+1	reviewed	p.G625V	0.998	112	0%	66	30.3%	-	-	probably_damaging(0.994)	deleterious(0.01)	deleterious(0.858)	HMMPfam_CBS
KIAA0090	23065	genome.wustl.edu	37	1	19559573	19559573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015047.1	-1	predicted	p.A497T	1.000	107	0%	96	22.9%	-	-	benign(0.235)	tolerated(0.11)	neutral(0.295)	superfamily_Quinoprotein alcohol dehydrogenase-like
E2F2	1870	genome.wustl.edu	37	1	23845536	23845536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004091.2	-1	reviewed	p.T275M	1.000	95	0%	69	15.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TMEM57	55219	genome.wustl.edu	37	1	25785107	25785107	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018202.4	+1	validated	p.I293T	1.000	143	0%	87	21.8%	-	-	benign(0.01)	tolerated(0.25)	neutral(0.037)	HMMPfam_Macoilin
MACF1	23499	genome.wustl.edu	37	1	39852996	39852996	+	Missense_Mutation	SNP	C	C	T	rs188910967	by1000genomes	TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.R3268W	0.102	145	0%	108	19.4%	-	-	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
B4GALT2	8704	genome.wustl.edu	37	1	44447564	44447564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005417.1	+1	reviewed	p.R173W	1.000	32	0%	28	28.6%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Galactosyl_T_2,superfamily_Nucleotide-diphospho-sugar transferases
PDZK1IP1	10158	genome.wustl.edu	37	1	47650687	47650687	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005764.3	-1	validated	p.A87T	0.076	173	0%	109	20.2%	-	-	benign(0.108)	tolerated(0.35)	neutral(0.029)	NULL
PODN	127435	genome.wustl.edu	37	1	53544471	53544471	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153703.3	+1	validated	p.R478H	1.000	27	0%	25	16%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMSmart_LRR_TYP,superfamily_SSF52047
PPAP2B	8613	genome.wustl.edu	37	1	57002630	57002630	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003713.3	-1	reviewed	p.L98	0.628	117	0%	90	23.3%	-	-	-	-	-	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
WLS	79971	genome.wustl.edu	37	1	68610261	68610261	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002292.2	-1	validated	p.I449	0.887	122	0%	90	17.8%	-	-	-	-	-	NULL
LRRIQ3	127255	genome.wustl.edu	37	1	74507430	74507430	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105659.1	-1	provisional	p.K395N	0.000	185	0%	187	18.7%	-	-	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
RPL5	6125	genome.wustl.edu	37	1	93303099	93303099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000969.3	+1	reviewed	p.A205V	1.000	64	0%	61	21.3%	-	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	superfamily_Translational machinery components
PTBP2	58155	genome.wustl.edu	37	1	97189133	97189133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021190.2	+1	reviewed	p.V8I	1.000	524	0%	396	15.9%	-	-	benign(0.008)	tolerated(1)	-	NULL
RSBN1	54665	genome.wustl.edu	37	1	114340553	114340553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018364.3	-1	validated	p.R270H	0.984	282	0%	271	18.5%	-	-	benign(0.041)	tolerated(0.05)	neutral(0.348)	NULL
AMPD1	270	genome.wustl.edu	37	1	115217379	115217379	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000036.2	-1	reviewed	p.L598F	1.000	86	0%	60	13.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_A_deaminase,superfamily_SSF51556
CASQ2	845	genome.wustl.edu	37	1	116243932	116243934	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	TCA	TCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001232.3	-1	reviewed	p.D376in_frame_del	0.983:0.986:0.397	-	-	-	-	-	-	-	-	-	HMMPfam_Calsequestrin,PatternScan_CALSEQUESTRIN_2
ADAM30	11085	genome.wustl.edu	37	1	120436940	120436940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021794.2	-1	reviewed	p.P674T	0.986	103	0%	100	21%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
CERS2	29956	genome.wustl.edu	37	1	150939317	150939317	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022075.3	-1	reviewed	p.A255T	1.000	109	0%	90	10%	-	-	benign(0.171)	tolerated(0.07)	neutral(0.335)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_SM00724
GATAD2B	57459	genome.wustl.edu	37	1	153782678	153782678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020699.2	-1	validated	p.S586L	1.000	111	0%	98	26.5%	-	-	possibly_damaging(0.832)	tolerated(0.08)	deleterious(0.617)	NULL
HCN3	57657	genome.wustl.edu	37	1	155252555	155252555	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020897.1	+1	validated	p.R211H	1.000	29	3.4%	39	33.3%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_Ion_trans,superfamily_SSF81324
GON4L	54856	genome.wustl.edu	37	1	155735149	155735149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037533.1	-1	validated	p.T1372M	0.000	78	0%	98	17.3%	-	-	benign(0.036)	deleterious(0.05)	neutral(0.347)	NULL
PAQR6	79957	genome.wustl.edu	37	1	156214666	156214666	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024897.2	-1	provisional	p.Q110*	0.971	26	0%	22	18.2%	-	-	-	-	-	HMMPfam_HlyIII
KIRREL	55243	genome.wustl.edu	37	1	158063493	158063493	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018240.5	+1	validated	p.R554	1.000	58	0%	50	28%	-	-	-	-	-	NULL
CD1C	911	genome.wustl.edu	37	1	158262385	158262385	+	Splice_Site	SNP	G	G	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001765.2	+1	reviewed	e4-1	0.043	73	0%	44	25%	-	-	-	-	-	-
ADAMTS4	9507	genome.wustl.edu	37	1	161163472	161163472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005099.4	-1	reviewed	p.R565C	1.000	55	0%	54	25.9%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
DDR2	4921	genome.wustl.edu	37	1	162724632	162724632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014796.1	+1	reviewed	p.R135H	1.000	68	0%	69	18.8%	-	-	possibly_damaging(0.588)	tolerated(0.16)	neutral(0.263)	HMMPfam_F5_F8_type_C,HMMSmart_FA58C,superfamily_Gal_bind_like
DCAF6	55827	genome.wustl.edu	37	1	167973219	167973219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018442.2	+1	validated	p.R370Q	1.000	172	0%	119	19.3%	-	-	benign(0.116)	tolerated(0.43)	neutral(0.022)	superfamily_WD40_like
TNN	63923	genome.wustl.edu	37	1	175067523	175067523	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022093.1	+1	validated	p.T637	0.559	149	0%	122	22.1%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CACNA1E	777	genome.wustl.edu	37	1	181732633	181732633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000721.2	+1	reviewed	p.R1594H	0.999	73	0%	80	20%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
IKBKE	9641	genome.wustl.edu	37	1	206666428	206666428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014002.2	+1	validated	p.Q636H	0.988	45	0%	45	15.6%	-	-	benign(0.313)	tolerated(0.08)	neutral(0.397)	NULL
IL24	11009	genome.wustl.edu	37	1	207074977	207074977	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006850.2	+1	reviewed	p.V148M	0.000	188	0%	120	17.5%	-	-	benign(0.002)	tolerated(0.15)	neutral(0.241)	superfamily_4_helix_cytokine
ENAH	55740	genome.wustl.edu	37	1	225707117	225707118	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008493.1	-1	validated	p.R195fs	0.964:0.991	-	-	-	-	-	-	-	-	-	NULL
CDC42BPA	8476	genome.wustl.edu	37	1	227504752	227504752	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003607.3	-1	reviewed	p.N44K	1.000	220	0%	169	18.9%	-	-	benign(0.042)	deleterious(0.01)	neutral(0.408)	NULL
AGT	183	genome.wustl.edu	37	1	230846201	230846201	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000029.3	-1	reviewed	p.T132	0.000	60	0%	43	30.2%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
RYR2	6262	genome.wustl.edu	37	1	237947689	237947689	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001035.2	+1	reviewed	p.P4226L	0.758	109	0%	88	20.5%	-	-	benign(0.001)	-	-	NULL
CEP170	9859	genome.wustl.edu	37	1	243327646	243327646	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014812.2	-1	reviewed	p.I1206F	1.000	354	0%	234	10.3%	-	-	possibly_damaging(0.61)	tolerated(0.08)	deleterious(0.511)	NULL
KIF26B	55083	genome.wustl.edu	37	1	245766077	245766077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018012.3	+1	provisional	p.A517T	1.000	143	0%	122	17.2%	-	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR2M5	127059	genome.wustl.edu	37	1	248309221	248309221	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004690.1	+1	provisional	p.M258V	0.000	185	0%	174	20.1%	-	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_7tm_1,superfamily_SSF81321
OR14C36	127066	genome.wustl.edu	37	1	248512578	248512578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001918.1	+1	provisional	p.R168W	0.003	144	0%	154	15.6%	-	-	benign(0.002)	deleterious(0)	neutral(0.445)	HMMPfam_7tm_1,superfamily_SSF81321
PXDN	7837	genome.wustl.edu	37	2	1652993	1652993	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.N853	0.994	20	0%	13	30.8%	-	-	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
PDIA6	10130	genome.wustl.edu	37	2	10927561	10927561	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005742.2	-1	validated	p.L335	1.000	116	0.9%	89	24.7%	-	-	-	-	-	superfamily_Thioredoxin-like
PDIA6	10130	genome.wustl.edu	37	2	10932004	10932004	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005742.2	-1	validated	p.D167E	0.407	247	0%	235	23%	-	-	possibly_damaging(0.565)	tolerated(0.2)	neutral(0.242)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
SUPT7L	9913	genome.wustl.edu	37	2	27880455	27880455	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014860.1	-1	provisional	p.A167	0.961	52	0%	33	18.2%	-	-	-	-	-	HMMPfam_Bromo_TP,HMMSmart_SM00576
SPDYA	245711	genome.wustl.edu	37	2	29038987	29038987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142634.1	+1	validated	p.R36H	1.000	182	0%	181	16.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
KIAA1841	84542	genome.wustl.edu	37	2	61349272	61349272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129993.1	+1	validated	p.R711H	1.000	199	0%	156	19.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM161A	84140	genome.wustl.edu	37	2	62067440	62067440	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000418113	-1	known	p.C229Y	0.983	436	0%	406	17.5%	-	-	-	-	-	NULL
NAGK	55577	genome.wustl.edu	37	2	71298830	71298830	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017567.4	+1	validated	p.S76	0.990	41	0%	42	16.7%	-	-	-	-	-	HMMPfam_BcrAD_BadFG,superfamily_SSF53067
ALMS1	7840	genome.wustl.edu	37	2	73678048	73678048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.T1464M	0.000	92	0%	93	11.8%	-	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	NULL
LINC00152	112597	genome.wustl.edu	37	2	87820977	87820977	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_024204.1	+1	validated	NULL	0.002	278	0%	193	17.6%	-	-	-	-	-	-
IGKV3-7	28915	genome.wustl.edu	37	2	89278192	89278193	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000390247	-1	known	p.S48fs	0.006:0.005	-	-	-	-	-	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PROM2	150696	genome.wustl.edu	37	2	95950761	95950761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144707.2	+1	reviewed	p.D591E	0.000	30	0%	41	19.5%	-	-	benign(0.009)	deleterious(0.01)	neutral(0.406)	HMMPfam_Prominin
FER1L5	90342	genome.wustl.edu	37	2	97361395	97361395	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001113382.1	+1	provisional	p.T1324	0.043	25	0%	26	19.2%	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TUBA3E	112714	genome.wustl.edu	37	2	130949416	130949416	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207312.2	-1	validated	p.G447	0.982	267	0%	229	24.5%	-	-	-	-	-	NULL
LCT	3938	genome.wustl.edu	37	2	136548393	136548395	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002299.2	-1	reviewed	p.K1723in_frame_del	0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
ZEB2	9839	genome.wustl.edu	37	2	145157705	145157705	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014795.3	-1	reviewed	p.T350M	1.000	153	0%	107	23.4%	-	-	probably_damaging(0.994)	deleterious(0.03)	deleterious(0.817)	NULL
PLA2R1	22925	genome.wustl.edu	37	2	160811724	160811724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007366.3	-1	validated	p.C1096Y	1.000	404	0%	354	18.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like
LRP2	4036	genome.wustl.edu	37	2	170147400	170147400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004525.2	-1	reviewed	p.P293T	1.000	496	0%	387	15.5%	-	-	probably_damaging(0.998)	tolerated(0.58)	deleterious(0.479)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
GPR155	151556	genome.wustl.edu	37	2	175330526	175330526	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033045.2	-1	validated	p.T457	0.999	119	0%	103	15.5%	-	-	-	-	-	NULL
HOXD3	3232	genome.wustl.edu	37	2	177036849	177036849	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006898.4	+1	reviewed	p.P382	0.901	26	0%	27	18.5%	-	-	-	-	-	NULL
NRP2	8828	genome.wustl.edu	37	2	206641090	206641090	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018534.3	+1	reviewed	p.A854V	0.997	24	0%	17	29.4%	-	-	benign(0.004)	tolerated(1)	-	NULL
PIKFYVE	200576	genome.wustl.edu	37	2	209138443	209138443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	p.R103H	1.000	157	0.6%	132	12.1%	-	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
UNC80	285175	genome.wustl.edu	37	2	210818949	210818949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.A2405V	1.000	165	0%	123	19.5%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215823796	215823796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173076.2	-1	reviewed	p.I1964T	1.000	234	0%	190	20%	-	-	benign(0)	tolerated(1)	-	NULL
EPHA4	2043	genome.wustl.edu	37	2	222429065	222429065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004438.3	-1	reviewed	p.Y70C	1.000	86	0%	80	20%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
NMUR1	10316	genome.wustl.edu	37	2	232393392	232393392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006056.4	-1	validated	p.L114M	0.838	37	0%	41	22%	-	-	benign(0.022)	tolerated(0.62)	neutral(0.005)	HMMPfam_7tm_1,superfamily_SSF81321
CXCR7	57007	genome.wustl.edu	37	2	237489572	237489572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020311.2	+1	reviewed	p.S155N	0.000	142	0%	128	25%	-	-	benign(0.001)	tolerated(0.27)	neutral(0.034)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
KIF1A	547	genome.wustl.edu	37	2	241660353	241660353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004321.4	-1	reviewed	p.R1515W	0.997	29	0%	41	19.5%	-	-	probably_damaging(0.966)	deleterious(0.01)	deleterious(0.814)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4730216	4730216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099952.2	+1	reviewed	p.A1238V	1.000	111	0%	119	16.8%	-	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMPfam_RYDR_ITPR
NUP210	23225	genome.wustl.edu	37	3	13360603	13360603	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024923.2	-1	reviewed	p.T1844	0.000	55	0%	62	14.5%	-	-	-	-	-	NULL
NEK10	152110	genome.wustl.edu	37	3	27257371	27257371	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199347.2	-1	validated	p.C697	0.062	121	0%	97	17.5%	-	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMSmart_SM00219,HMMSmart_SM00220
TRANK1	9881	genome.wustl.edu	37	3	36874929	36874929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014831.2	-1	provisional	p.A1455T	0.916	28	0%	39	23.1%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
MLH1	4292	genome.wustl.edu	37	3	37090505	37090505	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000249.3	+1	reviewed	p.Q700	0.998	138	0%	140	19.3%	-	-	-	-	-	NULL
PLCD1	5333	genome.wustl.edu	37	3	38049815	38049815	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130964.1	-1	validated	p.N670I	0.999	96	0%	73	23.3%	-	-	possibly_damaging(0.912)	tolerated(0.09)	deleterious(0.660)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
LAMB2	3913	genome.wustl.edu	37	3	49166724	49166724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002292.3	-1	reviewed	p.G518S	1.000	30	0%	25	20%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,superfamily_SSF57196
LAMB2	3913	genome.wustl.edu	37	3	49167372	49167372	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002292.3	-1	reviewed	p.S435	0.000	61	0%	48	18.8%	-	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
AMT	275	genome.wustl.edu	37	3	49455073	49455073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000481.3	-1	reviewed	p.R371H	0.461	36	0%	31	25.8%	-	-	benign(0.011)	deleterious(0.02)	neutral(0.384)	HMMPfam_GCV_T_C,superfamily_Aminomethyltransferase beta-barrel domain
PTPRG	5793	genome.wustl.edu	37	3	62118283	62118283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002841.3	+1	reviewed	p.P208L	1.000	266	0%	207	27.5%	-	-	benign(0.063)	tolerated(0.1)	neutral(0.290)	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
POU1F1	5449	genome.wustl.edu	37	3	87322579	87322579	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122757.1	-1	reviewed	p.L70	0.988	183	0%	138	18.1%	-	-	-	-	-	NULL
LOC100287763	100287763	genome.wustl.edu	37	3	98244075	98244075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342388.1	+1	model	p.A130T	1.000	47	0%	36	25%	-	-	-	-	-	NULL
ZBTB11	27107	genome.wustl.edu	37	3	101395476	101395476	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014415.3	-1	validated	p.Y95N	0.144	22	0%	20	40%	-	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
FAM55C	91775	genome.wustl.edu	37	3	101540410	101540410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134456.1	+1	validated	p.G431D	0.972	119	0%	89	14.6%	-	-	possibly_damaging(0.648)	tolerated(0.47)	neutral(0.239)	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126735833	126735833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.R1054C	0.686	46	0%	32	25%	-	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
ASTE1	28990	genome.wustl.edu	37	3	130743435	130743435	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014065.2	-1	validated	p.A239V	0.005	71	0%	55	18.2%	-	-	benign(0)	tolerated(1)	-	NULL
TF	7018	genome.wustl.edu	37	3	133483740	133483740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001063.3	+1	reviewed	p.T440I	0.000	450	0%	376	16%	-	-	benign(0.021)	tolerated(0.19)	neutral(0.051)	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II
DZIP1L	199221	genome.wustl.edu	37	3	137787028	137787028	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173543.2	-1	validated	p.P599	0.000	46	0%	42	19%	-	-	-	-	-	NULL
NMNAT3	349565	genome.wustl.edu	37	3	139297817	139297817	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178177.2	-1	provisional	p.R27*	1.000	199	0%	169	20.7%	-	-	-	-	-	HMMPfam_CTP_transf_2,superfamily_SSF52374
TRIM42	287015	genome.wustl.edu	37	3	140401834	140401834	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152616.3	+1	reviewed	p.I291T	1.000	168	0%	141	18.4%	-	-	possibly_damaging(0.497)	tolerated(0.49)	neutral(0.177)	HMMPfam_zf-B_box,HMMSmart_SM00336
MIR16-2	406951	genome.wustl.edu	37	3	160122562	160122562	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000362117	+1	known	NULL	1.000	200	0%	229	11.4%	-	-	-	-	-	-
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.H1047R	1.000	125	0%	105	16.2%	-	-	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMSmart_PI3Kc,superfamily_Kinase_like
ACTL6A	86	genome.wustl.edu	37	3	179298428	179298428	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004301.3	+1	reviewed	p.C257R	1.000	433	0%	289	19.7%	-	-	benign(0)	tolerated(0.52)	neutral(0.009)	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
LIPH	200879	genome.wustl.edu	37	3	185251436	185251436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139248.2	-1	reviewed	p.M150T	1.000	292	0%	216	20.4%	-	-	benign(0.043)	deleterious(0.01)	neutral(0.408)	HMMPfam_Lipase,superfamily_SSF53474
MAN2B2	23324	genome.wustl.edu	37	4	6621701	6621701	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015274.1	+1	validated	p.S954	0.421	41	0%	33	21.2%	-	-	-	-	-	HMMPfam_Glyco_hydro_38C
SLC2A9	56606	genome.wustl.edu	37	4	9836564	9836564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020041.2	-1	reviewed	p.A454T	1.000	31	0%	29	34.5%	-	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
WDR1	9948	genome.wustl.edu	37	4	10089957	10089957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017491.3	-1	reviewed	p.A226V	0.056	157	0%	142	14.8%	-	-	benign(0.049)	tolerated(0.26)	neutral(0.037)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
KLB	152831	genome.wustl.edu	37	4	39435901	39435901	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175737.3	+1	validated	p.T299	0.000	81	0%	84	14.3%	-	-	-	-	-	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat
LIMCH1	22998	genome.wustl.edu	37	4	41621389	41621390	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014988.2	+1	validated	p.E292fs	0.000:0.999	-	-	-	-	-	-	-	-	-	NULL
LNX1	84708	genome.wustl.edu	37	4	54362345	54362345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126328.1	-1	reviewed	p.R399C	1.000	150	0%	121	20.7%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
SCD5	79966	genome.wustl.edu	37	4	83601873	83601873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037582.2	-1	validated	p.R186W	0.977	103	0%	77	10.4%	-	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_FA_desaturase
PITX2	5308	genome.wustl.edu	37	4	111539617	111539617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394595	-1	known	p.I138V	0.098	144	0%	112	18.8%	-	-	unknown(0)	-	-	NULL
FAM160A1	729830	genome.wustl.edu	37	4	152567753	152567753	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109977.1	+1	predicted	p.A424T	1.000	218	0%	154	16.9%	-	-	probably_damaging(0.998)	tolerated(0.59)	deleterious(0.479)	NULL
SORBS2	8470	genome.wustl.edu	37	4	186544264	186544264	+	Silent	SNP	G	G	A	rs149773204	by1000genomes	TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021069.4	-1	reviewed	p.P769	0.091	76	0%	70	21.4%	-	-	-	-	-	NULL
SLC12A7	10723	genome.wustl.edu	37	5	1053521	1053521	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006598.2	-1	validated	p.Q1035*	0.930	157	0%	88	21.6%	-	-	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13701399	13701399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.M4495I	1.000	110	0%	71	25.4%	-	-	benign(0.284)	deleterious(0)	deleterious(0.531)	HMMPfam_Dynein_heavy
CDH12	1010	genome.wustl.edu	37	5	21817082	21817082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004061.3	-1	reviewed	p.T325I	1.000	334	0%	215	15.8%	-	-	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ADAMTS12	81792	genome.wustl.edu	37	5	33881525	33881525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030955.2	-1	reviewed	p.S63N	0.002	95	0%	87	24.1%	-	-	benign(0.318)	tolerated(1)	neutral(0.100)	HMMPfam_Pep_M12B_propep
GPX8	493869	genome.wustl.edu	37	5	54456034	54456034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008397.2	+1	validated	p.A5V	0.000	190	0%	147	24.5%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
BDP1	55814	genome.wustl.edu	37	5	70782440	70782440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018429.2	+1	reviewed	p.R400Q	0.968	160	0%	106	16%	-	-	possibly_damaging(0.914)	deleterious(0.02)	deleterious(0.749)	NULL
TMEM171	134285	genome.wustl.edu	37	5	72419496	72419496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173490.6	+1	validated	p.R99Q	0.045	147	0%	128	20.3%	-	-	benign(0.033)	tolerated(0.6)	neutral(0.006)	NULL
CRHBP	1393	genome.wustl.edu	37	5	76249960	76249961	+	In_Frame_Ins	INS	-	-	TGG	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001882.3	+1	reviewed	p.94in_frame_insW	0.908:0.911	-	-	-	-	-	-	-	-	-	superfamily_Spermadhesin CUB domain,HMMPfam_CRF-BP
RASGRF2	5924	genome.wustl.edu	37	5	80422899	80422899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006909.1	+1	validated	p.T868M	0.154	147	0%	109	22.9%	-	-	possibly_damaging(0.553)	tolerated(0.05)	deleterious(0.534)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
ERAP1	51752	genome.wustl.edu	37	5	96121571	96121574	+	Frame_Shift_Del	DEL	CAGT	CAGT	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	CAGT	CAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016442.3	-1	validated	p.T621fs	0.003:0.016:0.621:0.974	-	-	-	-	-	-	-	-	-	NULL
FBN2	2201	genome.wustl.edu	37	5	127681191	127681191	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001999.3	-1	reviewed	p.C1025	1.000	56	0%	46	23.9%	-	-	-	-	-	HMMPfam_TB,superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases
ADAMTS19	171019	genome.wustl.edu	37	5	129040026	129040026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133638.3	+1	reviewed	p.A1079V	0.956	122	0%	124	19.4%	-	-	benign(0.001)	tolerated(0.35)	neutral(0.021)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
PKD2L2	27039	genome.wustl.edu	37	5	137271497	137271497	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014386.2	+1	validated	p.N561	0.945	156	0.6%	120	13.3%	-	-	-	-	-	NULL
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139820595	139820595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.H261Y	1.000	265	0%	194	16.5%	-	-	possibly_damaging(0.825)	tolerated(0.25)	neutral(0.349)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PCDHA6	56142	genome.wustl.edu	37	5	140209518	140209518	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018909.2	+1	reviewed	p.P614	0.000	65	0%	67	25.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA9	9752	genome.wustl.edu	37	5	140229865	140229865	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031857.1	+1	reviewed	p.R595	0.996	29	0%	34	14.7%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140250134	140250134	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018902.3	+1	reviewed	p.D482	0.352	59	0%	41	24.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA13	56136	genome.wustl.edu	37	5	140262146	140262146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018904.2	+1	reviewed	p.R98Q	0.865	87	0%	57	28.1%	-	-	benign(0.022)	tolerated(0.62)	neutral(0.005)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHB1	29930	genome.wustl.edu	37	5	140431394	140431394	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013340.2	+1	reviewed	p.P113	0.008	73	0%	49	22.4%	-	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
PCDHGB7	56099	genome.wustl.edu	37	5	140798161	140798161	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018927.2	+1	reviewed	p.D245	0.000	55	0%	61	11.5%	-	-	-	-	-	superfamily_Cadherin-like
NR3C1	2908	genome.wustl.edu	37	5	142675154	142675154	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024094.1	-1	reviewed	p.Q633*	1.000	135	0%	110	19.1%	-	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
HAVCR1	26762	genome.wustl.edu	37	5	156482403	156482403	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099414.1	-1	reviewed	p.W63L	0.054	105	0%	110	15.5%	-	-	unknown(0)	tolerated(0.62)	-	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
EBF1	1879	genome.wustl.edu	37	5	158135029	158135029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024007.3	-1	validated	p.P568T	1.000	238	0%	232	24.6%	-	-	probably_damaging(1)	tolerated(0.14)	deleterious(0.750)	NULL
ADRA1B	147	genome.wustl.edu	37	5	159344141	159344141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000679.3	+1	reviewed	p.R77W	1.000	48	0%	43	18.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GABRG2	2566	genome.wustl.edu	37	5	161531006	161531006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198903.2	+1	reviewed	p.T288I	1.000	226	0%	154	12.3%	-	-	probably_damaging(0.986)	tolerated(0.4)	neutral(0.451)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
WWC1	23286	genome.wustl.edu	37	5	167882491	167882491	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015238.2	+1	reviewed	p.F930S	1.000	76	0%	61	14.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FAM217A	222826	genome.wustl.edu	37	6	4069816	4069816	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173563.1	-1	predicted	p.T214S	0.996	233	0%	196	23.5%	-	-	benign(0.002)	tolerated(1)	-	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12124018	12124018	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002114.2	+1	validated	p.T1330	0.000	80	0%	60	11.7%	-	-	-	-	-	NULL
HIST1H1A	3024	genome.wustl.edu	37	6	26017619	26017619	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005325.3	-1	reviewed	p.A114	0.000	221	0%	179	21.2%	-	-	-	-	-	NULL
PKHD1	5314	genome.wustl.edu	37	6	51924834	51924834	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138694.3	-1	reviewed	p.R375	1.000	110	0%	116	20.7%	-	-	-	-	-	NULL
HTR1B	3351	genome.wustl.edu	37	6	78173081	78173081	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000863.1	-1	provisional	p.A14T	0.001	69	0%	66	24.2%	-	-	possibly_damaging(0.465)	tolerated(0.11)	neutral(0.424)	superfamily_Family A G protein-coupled receptor-like
PHIP	55023	genome.wustl.edu	37	6	79770485	79770485	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017934.5	-1	validated	p.H80	1.000	173	0%	144	16%	-	-	-	-	-	NULL
UFL1	23376	genome.wustl.edu	37	6	96997359	96997359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015323.4	+1	validated	p.T531M	1.000	268	0%	176	18.8%	-	-	possibly_damaging(0.768)	tolerated(0.1)	deleterious(0.571)	NULL
USP45	85015	genome.wustl.edu	37	6	99930758	99930758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080481.1	-1	provisional	p.D239G	1.000	140	0%	110	28.2%	-	-	benign(0.004)	tolerated(0.4)	neutral(0.016)	HMMPfam_UCH,superfamily_Cysteine proteinases
REV3L	5980	genome.wustl.edu	37	6	111628680	111628681	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002912.3	-1	validated	p.C3045fs	1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
TRAF3IP2	10758	genome.wustl.edu	37	6	111912627	111912627	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147686.2	-1	reviewed	p.V221	0.049	70	0%	63	15.9%	-	-	-	-	-	NULL
SLC35D3	340146	genome.wustl.edu	37	6	137245686	137245686	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008783.1	+1	provisional	p.R368Q	0.000	140	0%	126	17.5%	-	-	benign(0.016)	tolerated(0.31)	neutral(0.028)	NULL
OLIG3	167826	genome.wustl.edu	37	6	137815107	137815107	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175747.2	-1	provisional	p.S67	1.000	85	0%	50	12%	-	-	-	-	-	NULL
KIAA1244	57221	genome.wustl.edu	37	6	138601198	138601198	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020340.4	+1	validated	p.I786	0.005	124	0%	113	17.7%	-	-	-	-	-	HMMSmart_Sec7
NHSL1	57224	genome.wustl.edu	37	6	138892930	138892930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000342260	-1	known	p.R40H	1.000	150	0%	97	15.5%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZC2HC1B	153918	genome.wustl.edu	37	6	144205482	144205482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013623.2	+1	validated	p.R24C	1.000	217	0%	190	30%	-	-	benign(0.02)	tolerated(0.13)	neutral(0.254)	NULL
ARID1B	57492	genome.wustl.edu	37	6	157522274	157522274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017519.2	+1	validated	p.V1498I	1.000	91	0%	117	20.5%	-	-	possibly_damaging(0.776)	-	-	NULL
IGF2R	3482	genome.wustl.edu	37	6	160491079	160491079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000876.2	+1	reviewed	p.E1478K	0.915	115	0%	96	18.8%	-	-	benign(0.003)	tolerated(0.53)	neutral(0.007)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
FBXL18	80028	genome.wustl.edu	37	7	5521511	5521511	+	Nonsense_Mutation	SNP	G	G	A	rs190326632	by1000genomes	TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000297035	-1	known	p.R243*	1.000	26	0%	29	17.2%	-	-	-	-	-	NULL
EIF2AK1	27102	genome.wustl.edu	37	7	6082581	6082581	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014413.3	-1	reviewed	p.S258	0.008	78	0%	71	23.9%	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
GRID2IP	392862	genome.wustl.edu	37	7	6537709	6537709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145118.1	-1	validated	p.M1184V	1.000	62	0%	41	12.2%	-	-	benign(0.026)	tolerated(0.12)	neutral(0.262)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
INHBA	3624	genome.wustl.edu	37	7	41739850	41739850	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002192.2	-1	reviewed	p.A41	1.000	47	0%	49	18.4%	-	-	-	-	-	NULL
MYO1G	64005	genome.wustl.edu	37	7	45005713	45005713	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033054.2	-1	validated	p.R706*	0.999	100	0%	69	21.7%	-	-	-	-	-	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
WBSCR17	64409	genome.wustl.edu	37	7	70886066	70886066	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022479.1	+1	reviewed	p.A313S	1.000	65	0%	63	12.7%	-	-	benign(0.02)	tolerated(0.34)	neutral(0.024)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
TRIM50	135892	genome.wustl.edu	37	7	72738453	72738453	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178125.2	-1	provisional	p.C111	0.911	58	0%	44	15.9%	-	-	-	-	-	HMMPfam_zf-B_box,HMMSmart_SM00336
SEMA3C	10512	genome.wustl.edu	37	7	80427521	80427522	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006379.2	-1	validated	p.Y340fs	1.000:0.993	-	-	-	-	-	-	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
ZNF3	7551	genome.wustl.edu	37	7	99672830	99672830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032924.3	-1	validated	p.R67C	0.997	192	0%	162	17.3%	-	-	probably_damaging(0.991)	tolerated(0.21)	deleterious(0.488)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
AP4M1	9179	genome.wustl.edu	37	7	99700383	99700383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004722.3	+1	reviewed	p.S78N	1.000	248	0%	187	23%	-	-	benign(0.087)	tolerated(0.28)	neutral(0.038)	HMMPfam_Clat_adaptor_s,superfamily_Longin_like
FBXO24	26261	genome.wustl.edu	37	7	100193312	100193312	+	Silent	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033506.2	+1	reviewed	p.R397	1.000	132	0%	105	15.2%	-	-	-	-	-	superfamily_RCC1/BLIP-II
CLDN15	24146	genome.wustl.edu	37	7	100880792	100880793	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014343.2	-1	reviewed	p.L24fs	1.000:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_PMP22_Claudin
SLC26A5	375611	genome.wustl.edu	37	7	103052027	103052027	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198999.2	-1	reviewed	p.F137Y	1.000	175	0%	148	18.2%	-	-	possibly_damaging(0.495)	tolerated(0.07)	deleterious(0.484)	NULL
MET	4233	genome.wustl.edu	37	7	116339926	116339926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127500.1	+1	reviewed	p.T263M	1.000	131	0%	99	21.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
PLXNA4	91584	genome.wustl.edu	37	7	131982905	131982905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020911.1	-1	validated	p.R483Q	1.000	69	0%	70	18.6%	-	-	probably_damaging(0.988)	tolerated(0.32)	neutral(0.462)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
EXOC4	60412	genome.wustl.edu	37	7	132959871	132959871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021807.3	+1	reviewed	p.R74H	1.000	119	0%	90	23.3%	-	-	possibly_damaging(0.931)	tolerated(0.12)	deleterious(0.638)	HMMPfam_Sec8_exocyst
HTR5A	3361	genome.wustl.edu	37	7	154876006	154876006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024012.2	+1	reviewed	p.V295M	0.967	206	0%	160	22.5%	-	-	possibly_damaging(0.944)	deleterious(0)	deleterious(0.833)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PSD3	23362	genome.wustl.edu	37	8	18490155	18490155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015310.3	-1	validated	p.R793L	1.000	277	0%	229	24.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
DOK2	9046	genome.wustl.edu	37	8	21768191	21768191	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003974.2	-1	reviewed	p.R204Q	0.993	69	0%	65	21.5%	-	-	probably_damaging(0.991)	tolerated(0.15)	deleterious(0.685)	HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729
IKBKB	3551	genome.wustl.edu	37	8	42147734	42147734	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001556.1	+1	validated	p.A87	0.142	66	1.5%	36	22.2%	-	-	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
SNTG1	54212	genome.wustl.edu	37	8	51442736	51442736	+	Splice_Site	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018967.2	+1	reviewed	e8-1	1.000	193	0%	208	19.2%	-	-	-	-	-	-
CTHRC1	115908	genome.wustl.edu	37	8	104388170	104388170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138455.2	+1	provisional	p.D119Y	1.000	96	0%	61	18%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PKHD1L1	93035	genome.wustl.edu	37	8	110471929	110471929	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177531.4	+1	validated	p.T2370	0.984	161	0%	125	19.2%	-	-	-	-	-	NULL
FAM91A1	157769	genome.wustl.edu	37	8	124799557	124799557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144963.2	+1	validated	p.A379T	1.000	123	0%	109	13.8%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PLEC	5339	genome.wustl.edu	37	8	145005731	145005731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.R896W	0.994	59	0%	55	23.6%	-	-	unknown(0)	-	-	HMMSmart_SM00150,superfamily_Spectrin repeat
CDC37L1	55664	genome.wustl.edu	37	9	4706075	4706077	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017913.2	+1	validated	p.E327in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_SSF101391
C9orf11	54586	genome.wustl.edu	37	9	27294315	27294315	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020641.2	-1	validated	p.N96	0.558	453	0%	369	15.4%	-	-	-	-	-	NULL
ACO1	48	genome.wustl.edu	37	9	32430501	32430501	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002197.2	+1	reviewed	p.A552V	1.000	234	0%	170	20%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
C9orf24	84688	genome.wustl.edu	37	9	34379091	34379091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_147169.1	-1	reviewed	p.D107N	0.005	138	0%	124	19.4%	-	-	benign(0.17)	tolerated(0.34)	neutral(0.038)	NULL
DNAI1	27019	genome.wustl.edu	37	9	34493294	34493294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012144.2	+1	reviewed	p.A262T	0.405	124	0%	100	30%	-	-	benign(0)	tolerated(0.78)	neutral(0.001)	superfamily_WD40_like
IL11RA	3590	genome.wustl.edu	37	9	34657115	34657115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142784.1	+1	reviewed	p.G139S	1.000	106	0%	92	23.9%	-	-	possibly_damaging(0.685)	tolerated(0.57)	neutral(0.251)	HMMSmart_SM00060,superfamily_Fibronectin type III
C9orf131	138724	genome.wustl.edu	37	9	35042264	35042264	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203299.2	+1	validated	p.L5	0.035	50	0%	40	20%	-	-	-	-	-	NULL
PRKACG	5568	genome.wustl.edu	37	9	71628435	71628435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002732.3	-1	reviewed	p.V192M	1.000	43	0%	49	14.3%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
FGD3	89846	genome.wustl.edu	37	9	95776198	95776198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083536.1	+1	validated	p.P367L	1.000	107	0%	86	24.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_PH domain-like
PHF19	26147	genome.wustl.edu	37	9	123626327	123626327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015651.1	-1	validated	p.R323Q	1.000	129	0%	109	16.5%	-	-	probably_damaging(0.986)	deleterious(0.04)	deleterious(0.783)	NULL
SET	6418	genome.wustl.edu	37	9	131454262	131454262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122821.1	+1	validated	p.F99C	1.000	94	0%	84	23.8%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_NAP
PRRC2B	84726	genome.wustl.edu	37	9	134357790	134357790	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000451855	+1	known	p.R405C	0.965	98	0%	71	22.5%	-	-	-	-	-	NULL
COL5A1	1289	genome.wustl.edu	37	9	137593103	137593103	+	Missense_Mutation	SNP	G	G	A	rs142933609	by1000genomes	TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000093.3	+1	reviewed	p.R193H	1.000	162	0%	146	15.8%	-	-	unknown(0)	deleterious(0)	-	HMMSmart_LamG,HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
KCNT1	57582	genome.wustl.edu	37	9	138660508	138660508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020822.2	+1	validated	p.R464C	1.000	24	0%	25	20%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_NAD(P)-bd
FAM188A	80013	genome.wustl.edu	37	10	15885223	15885223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024948.2	-1	validated	p.R75W	1.000	116	0%	79	19%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ANK3	288	genome.wustl.edu	37	10	61958166	61958166	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020987.2	-1	reviewed	p.R541*	1.000	187	0%	141	24.1%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ARID5B	84159	genome.wustl.edu	37	10	63845585	63845585	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.K442fs	1.000	-	-	-	-	-	-	-	-	-	NULL
CDH23	64072	genome.wustl.edu	37	10	73491782	73491782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.A1252T	0.646	60	0%	53	24.5%	-	-	benign(0.165)	tolerated(0.26)	neutral(0.049)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73500595	73500595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.R1502Q	0.993	43	0%	35	28.6%	-	-	benign(0.342)	tolerated(0.22)	neutral(0.150)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH23	64072	genome.wustl.edu	37	10	73544093	73544093	+	Silent	SNP	C	C	T	rs74145660	byCluster;by1000genomes	TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022124.5	+1	reviewed	p.D1806	0.751	62	0%	48	18.8%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ZCCHC24	219654	genome.wustl.edu	37	10	81146193	81146193	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153367.3	-1	validated	p.G212S	1.000	42	0%	26	23.1%	-	-	unknown(0)	-	-	NULL
LIPM	340654	genome.wustl.edu	37	10	90572932	90572932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128215.1	+1	validated	p.S115N	1.000	256	0%	186	12.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF53474
PCGF5	84333	genome.wustl.edu	37	10	93000278	93000278	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032373.3	+1	provisional	p.S50	1.000	253	0%	218	17%	-	-	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
KIF11	3832	genome.wustl.edu	37	10	94366053	94366053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004523.3	+1	reviewed	p.A37T	0.991	137	0%	117	18.8%	-	-	possibly_damaging(0.576)	deleterious(0.02)	deleterious(0.581)	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540
CCNJ	54619	genome.wustl.edu	37	10	97810101	97810101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134375.1	+1	validated	p.R53H	1.000	270	0%	227	11.5%	-	-	benign(0.015)	tolerated(0.34)	neutral(0.024)	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,superfamily_Cyclin_like
RRP12	23223	genome.wustl.edu	37	10	99126521	99126522	+	In_Frame_Ins	INS	-	-	CTCCTCCTCCTC	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015179.3	-1	validated	p.1064in_frame_insEEEE	0.116:0.115	-	-	-	-	-	-	-	-	-	NULL
BTRC	8945	genome.wustl.edu	37	10	103310583	103310583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033637.2	+1	reviewed	p.S595F	1.000	199	0%	161	21.7%	-	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	NULL
ATRNL1	26033	genome.wustl.edu	37	10	117027869	117027869	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207303.2	+1	validated	p.C683Y	1.000	349	0.3%	277	12.3%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_PSI,HMMSmart_SM00423
DNHD1	144132	genome.wustl.edu	37	11	6568129	6568129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.G1987D	0.699	27	0%	16	25%	-	-	benign(0.041)	tolerated(0.09)	neutral(0.299)	superfamily_P-loop containing nucleoside triphosphate hydrolases
DCHS1	8642	genome.wustl.edu	37	11	6645358	6645358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.A2517T	0.029	28	0%	19	26.3%	-	-	benign(0)	tolerated(0.45)	neutral(0.012)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
CTR9	9646	genome.wustl.edu	37	11	10786162	10786162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014633.3	+1	provisional	p.A494V	1.000	171	0%	122	19.7%	-	-	benign(0.212)	deleterious(0.02)	neutral(0.404)	NULL
USP47	55031	genome.wustl.edu	37	11	11944322	11944322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017944.3	+1	validated	p.S356G	1.000	220	0%	154	20.1%	-	-	benign(0.109)	deleterious(0.02)	neutral(0.392)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP47	55031	genome.wustl.edu	37	11	11969623	11969623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017944.3	+1	validated	p.V1007I	1.000	274	0%	225	27.1%	-	-	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
CYP2R1	120227	genome.wustl.edu	37	11	14901724	14901724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024514.4	-1	reviewed	p.R320W	0.992	78	0%	78	23.1%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_p450,superfamily_Cytochrome_P450
ZDHHC5	25921	genome.wustl.edu	37	11	57440646	57440646	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015457.2	+1	validated	p.T28	0.470	279	0.4%	216	16.2%	-	-	-	-	-	NULL
ZBTB3	79842	genome.wustl.edu	37	11	62520487	62520487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024784.3	-1	validated	p.V267D	0.841	76	0%	82	32.9%	-	-	benign(0.3)	tolerated(0.08)	neutral(0.393)	NULL
STX5	6811	genome.wustl.edu	37	11	62595058	62595058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003164.3	-1	validated	p.R91C	1.000	147	0%	115	18.3%	-	-	benign(0.015)	tolerated(0.08)	neutral(0.300)	HMMPfam_Syntaxin,superfamily_t-snare proteins
LOC100287771	100287771	genome.wustl.edu	37	11	63676565	63676565	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343092.1	-1	model	p.W37*	1.000	49	0%	37	18.9%	-	-	-	-	-	NULL
VEGFB	7423	genome.wustl.edu	37	11	64003313	64003313	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003377.3	+1	provisional	p.R44	0.046	109	0%	92	15.2%	-	-	-	-	-	superfamily_Cystine-knot cytokines
ARL2	402	genome.wustl.edu	37	11	64786118	64786118	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001667.2	+1	validated	p.T84	0.036	47	0%	53	20.8%	-	-	-	-	-	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
CAPN1	823	genome.wustl.edu	37	11	64955493	64955493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005186.2	+1	reviewed	p.T304M	0.984	72	0%	42	16.7%	-	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
GDPD5	81544	genome.wustl.edu	37	11	75153556	75153556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030792.6	-1	validated	p.C340Y	1.000	49	0%	45	17.8%	-	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
UVRAG	7405	genome.wustl.edu	37	11	75622998	75622998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003369.3	+1	reviewed	p.G170C	1.000	377	0.3%	248	17.3%	-	-	possibly_damaging(0.549)	tolerated(0.06)	deleterious(0.509)	NULL
DLG2	1740	genome.wustl.edu	37	11	83344270	83344270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142699.1	-1	reviewed	p.R642C	1.000	248	0%	175	18.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SH3-domain
FAT3	120114	genome.wustl.edu	37	11	92498067	92498067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.R1336H	1.000	174	0%	160	30.6%	-	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
GRIA4	2893	genome.wustl.edu	37	11	105782629	105782629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077244.1	+1	reviewed	p.N433D	1.000	76	0%	51	17.6%	-	-	possibly_damaging(0.873)	deleterious(0)	deleterious(0.784)	NULL
TMEM136	219902	genome.wustl.edu	37	11	120200701	120200701	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_174926.1	+1	provisional	p.P94H	0.994	324	0%	250	17.2%	-	-	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	HMMPfam_TRAM_LAG1_CLN8
ROBO4	54538	genome.wustl.edu	37	11	124754987	124754987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019055.5	-1	validated	p.Q984R	0.000	36	0%	28	39.3%	-	-	benign(0.026)	tolerated(1)	neutral(0.001)	NULL
SRPR	6734	genome.wustl.edu	37	11	126135906	126135906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003139.3	-1	reviewed	p.R335C	1.000	144	0%	110	15.5%	-	-	possibly_damaging(0.95)	deleterious(0.05)	deleterious(0.739)	superfamily_SRP54
SNX19	399979	genome.wustl.edu	37	11	130777941	130777941	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014758.2	-1	validated	p.A691V	1.000	187	0.5%	138	16.7%	-	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
SLC6A12	6539	genome.wustl.edu	37	12	307155	307155	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122847.1	-1	validated	p.A287	0.692	135	0%	95	22.1%	-	-	-	-	-	HMMPfam_SNF
KCNA5	3741	genome.wustl.edu	37	12	5154823	5154823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002234.2	+1	reviewed	p.G504R	0.999	120	0%	93	21.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	byCluster	TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12V	1.000	283	0%	177	19.8%	-	-	benign(0.048)	deleterious(0)	neutral(0.448)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
FAR2	55711	genome.wustl.edu	37	12	29446233	29446233	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018099.3	+1	provisional	p.L64	1.000	328	0%	266	13.9%	-	-	-	-	-	HMMPfam_NAD_binding_4,superfamily_NAD(P)-bd
KIF21A	55605	genome.wustl.edu	37	12	39763583	39763583	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017641.3	-1	validated	p.I133N	0.998	186	0%	131	25.2%	-	-	probably_damaging(0.992)	tolerated(0.52)	neutral(0.456)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAMTS20	80070	genome.wustl.edu	37	12	43824176	43824176	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025003.3	-1	validated	p.A1120	0.648	381	0%	243	19.3%	-	-	-	-	-	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ZC3H10	84872	genome.wustl.edu	37	12	56514509	56514509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032786.1	+1	provisional	p.R55C	1.000	83	0%	75	22.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1
SLC39A5	283375	genome.wustl.edu	37	12	56629416	56629416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135195.1	+1	validated	p.G293R	0.988	111	0%	89	16.9%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Zip
ANKRD52	283373	genome.wustl.edu	37	12	56638436	56638436	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173595.3	-1	validated	p.E908*	1.000	52	0%	47	17%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
BAZ2A	11176	genome.wustl.edu	37	12	57005806	57005806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013449.3	-1	validated	p.A456T	0.389	315	0%	261	20.3%	-	-	benign(0.001)	tolerated(0.15)	neutral(0.241)	NULL
OS9	10956	genome.wustl.edu	37	12	58089798	58089798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006812.3	+1	reviewed	p.D153N	1.000	130	0%	96	25%	-	-	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_PRKCSH
GRIP1	23426	genome.wustl.edu	37	12	66911700	66911700	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021150.3	-1	reviewed	p.P187S	1.000	148	0%	117	15.4%	-	-	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
PTPRQ	374462	genome.wustl.edu	37	12	81026012	81026012	+	Missense_Mutation	SNP	G	G	A	rs149569400	by1000genomes	TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.V1910I	0.999	401	0%	316	19.6%	-	-	probably_damaging(0.995)	tolerated(0.35)	deleterious(0.478)	NULL
PPFIA2	8499	genome.wustl.edu	37	12	81741409	81741409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003625.2	-1	reviewed	p.S712L	1.000	156	0%	105	18.1%	-	-	possibly_damaging(0.671)	tolerated(0.12)	deleterious(0.498)	NULL
SART3	9733	genome.wustl.edu	37	12	108941742	108941742	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014706.3	-1	reviewed	p.D155	0.963	93	0%	65	13.8%	-	-	-	-	-	HMMSmart_SM00386,superfamily_TPR-like
USP30	84749	genome.wustl.edu	37	12	109519157	109519157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032663.3	+1	validated	p.T247A	1.000	416	0%	392	17.9%	-	-	benign(0.015)	tolerated(0.45)	neutral(0.013)	HMMPfam_UCH,superfamily_SSF54001
C12orf51	283450	genome.wustl.edu	37	12	112645741	112645741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.R2268C	1.000	118	0%	99	18.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC60	160777	genome.wustl.edu	37	12	119954455	119954455	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178499.3	+1	validated	p.R304Q	0.986	158	0%	118	15.3%	-	-	probably_damaging(0.999)	tolerated(0.36)	deleterious(0.510)	NULL
ATP6V0A2	23545	genome.wustl.edu	37	12	124235717	124235717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012463.3	+1	reviewed	p.G666R	1.000	288	0%	243	16.9%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_V_ATPase_I
MMP17	4326	genome.wustl.edu	37	12	132326250	132326250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016155.4	+1	reviewed	p.H263R	0.785	67	0%	45	26.7%	-	-	benign(0)	tolerated(0.32)	neutral(0.024)	"HMMPfam_Peptidase_M10,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
ZMYM2	7750	genome.wustl.edu	37	13	20625618	20625618	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003453.2	+1	validated	p.R780*	0.995	264	0%	201	17.4%	-	-	-	-	-	HMMPfam_zf-FCS,HMMSmart_TRASH
GPR12	2835	genome.wustl.edu	37	13	27333568	27333568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005288.3	-1	validated	p.A133T	1.000	51	0%	49	32.7%	-	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
MYH7	4625	genome.wustl.edu	37	14	23894118	23894119	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.K847fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PRKD1	5587	genome.wustl.edu	37	14	30046563	30046563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002742.2	-1	validated	p.G874S	0.373	149	0%	115	16.5%	-	-	benign(0)	tolerated(0.73)	neutral(0.002)	NULL
MTHFD1	4522	genome.wustl.edu	37	14	64867522	64867522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005956.3	+1	reviewed	p.A18V	0.942	268	0%	219	20.5%	-	-	benign(0.033)	tolerated(0.06)	neutral(0.324)	HMMPfam_THF_DHG_CYH,superfamily_Aminoacid dehydrogenase-like N-terminal domain
LOC100287214	100287214	genome.wustl.edu	37	14	65007726	65007726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343281.1	-1	model	p.A490T	0.999	44	0%	51	15.7%	-	-	-	-	-	HMMPfam_NAD-GH
ZFYVE26	23503	genome.wustl.edu	37	14	68251149	68251149	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	p.H1176	0.001	51	0%	54	14.8%	-	-	-	-	-	NULL
DCAF4	26094	genome.wustl.edu	37	14	73407009	73407009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015604.3	+1	reviewed	p.T92M	1.000	84	0%	90	22.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
YLPM1	56252	genome.wustl.edu	37	14	75278374	75278374	+	Silent	SNP	T	T	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019589.2	+1	validated	p.G1760	0.096	147	0%	117	21.4%	-	-	-	-	-	NULL
ADCK1	57143	genome.wustl.edu	37	14	78353506	78353506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020421.3	+1	validated	p.V166M	0.998	85	0%	84	10.7%	-	-	benign(0.212)	tolerated(0.13)	neutral(0.273)	HMMPfam_ABC1,superfamily_Kinase_like
SPATA7	55812	genome.wustl.edu	37	14	88904393	88904393	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018418.4	+1	reviewed	p.S476L	0.002	142	0%	87	14.9%	-	-	possibly_damaging(0.68)	deleterious(0.01)	deleterious(0.648)	NULL
DDX24	57062	genome.wustl.edu	37	14	94528793	94528793	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020414.3	-1	reviewed	p.L298S	0.000	101	0%	81	19.8%	-	-	benign(0.002)	tolerated(0.11)	neutral(0.272)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
SERPINA3	12	genome.wustl.edu	37	14	95081024	95081024	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085.4	+1	reviewed	p.T82	0.000	130	0%	102	22.5%	-	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
TCL6	27004	genome.wustl.edu	37	14	96129003	96129005	+	Splice_Site	DEL	TAT	TAT	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	TAT	TAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000357168	+1	known	NULL	0.010	-	-	-	-	-	-	-	-	-	-
ATG2B	55102	genome.wustl.edu	37	14	96773161	96773161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018036.5	-1	validated	p.G1466S	0.850	119	0%	93	25.8%	-	-	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
CHRNA7	1139	genome.wustl.edu	37	15	32455506	32455506	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000746.3	+1	reviewed	p.H320	0.329	80	0%	57	26.3%	-	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ENSG00000221138	0	genome.wustl.edu	37	15	33256249	33256249	+	RNA	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000408211	-1	novel	NULL	0.013	237	1.3%	203	20.7%	-	-	-	-	-	-
THBS1	7057	genome.wustl.edu	37	15	39879689	39879689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003246.2	+1	reviewed	p.R421Q	0.996	31	0%	32	34.4%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
MAPKBP1	23005	genome.wustl.edu	37	15	42114483	42114483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128608.1	+1	validated	p.A1037V	0.999	35	0%	27	14.8%	-	-	benign(0.001)	tolerated(0.21)	neutral(0.044)	NULL
CTDSPL2	51496	genome.wustl.edu	37	15	44776539	44776539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016396.2	+1	validated	p.R102W	1.000	223	0%	167	19.2%	-	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
C15orf33	196951	genome.wustl.edu	37	15	49907356	49907356	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152647.2	-1	validated	p.R5*	0.000	180	0%	131	20.6%	-	-	-	-	-	NULL
DTWD1	56986	genome.wustl.edu	37	15	49935649	49935649	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144955.1	+1	validated	p.T263	0.949	83	0%	51	25.5%	-	-	-	-	-	HMMPfam_DTW
WDR72	256764	genome.wustl.edu	37	15	53901736	53901736	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182758.2	-1	validated	p.S976P	1.000	180	0%	140	20%	-	-	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	NULL
LOC100289289	100289289	genome.wustl.edu	37	15	62539746	62539746	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343368.1	-1	model	p.R998Q	0.897	72	0%	58	13.8%	-	-	probably_damaging(0.959)	tolerated(0.3)	neutral(0.431)	NULL
PDCD7	10081	genome.wustl.edu	37	15	65412141	65412141	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005707.1	-1	reviewed	p.R387	1.000	97	0%	93	21.5%	-	-	-	-	-	NULL
HEXA	3073	genome.wustl.edu	37	15	72648912	72648912	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000520.4	-1	reviewed	p.V100	0.006	160	0%	141	14.9%	-	-	-	-	-	HMMPfam_Glyco_hydro_20b,superfamily_beta-N-acetylhexosaminidase-like domain
PSTPIP1	9051	genome.wustl.edu	37	15	77310844	77310844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003978.3	+1	reviewed	p.R62W	0.999	87	0%	82	19.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FCH,HMMSmart_SM00055,superfamily_Prismane protein-like
SLC28A1	9154	genome.wustl.edu	37	15	85488380	85488380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004213.3	+1	validated	p.E633D	0.000	147	0%	116	17.2%	-	-	benign(0.002)	tolerated(0.56)	neutral(0.006)	NULL
ASB7	140460	genome.wustl.edu	37	15	101152628	101152628	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198243.2	+1	reviewed	p.H69	0.995	205	0%	182	23.6%	-	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CHSY1	22856	genome.wustl.edu	37	15	101719159	101719159	+	Silent	SNP	G	G	A	rs181121069	by1000genomes	TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000254190	-1	known	p.Y281	0.929	313	0%	213	23%	-	-	-	-	-	HMMPfam_CHGN
ITFG3	83986	genome.wustl.edu	37	16	312461	312461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032039.2	+1	validated	p.E294K	0.018	61	0%	73	26%	-	-	benign(0.004)	tolerated(0.85)	neutral(0.001)	NULL
SRRM2	23524	genome.wustl.edu	37	16	2812573	2812573	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016333.3	+1	validated	p.R682C	0.027	46	0%	39	28.2%	-	-	unknown(0)	-	-	NULL
ZNF205	7755	genome.wustl.edu	37	16	3169746	3169746	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042428.1	+1	validated	p.K362M	1.000	41	0%	27	22.2%	-	-	possibly_damaging(0.469)	deleterious(0)	deleterious(0.599)	superfamily_SSF57667
ZNF174	7727	genome.wustl.edu	37	16	3458397	3458397	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003450.2	+1	validated	p.V234	0.001	44	0%	35	31.4%	-	-	-	-	-	NULL
SLX4	84464	genome.wustl.edu	37	16	3656556	3656556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032444.2	-1	provisional	p.A227T	0.015	315	0%	292	17.5%	-	-	benign(0.269)	deleterious(0.02)	neutral(0.412)	NULL
PDXDC1	23042	genome.wustl.edu	37	16	15102639	15102639	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015027.2	+1	validated	p.G195S	1.000	353	0%	338	22.5%	-	-	probably_damaging(0.997)	tolerated(0.09)	deleterious(0.762)	superfamily_PLP-dependent transferases
DNAH3	55567	genome.wustl.edu	37	16	20955917	20955917	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.N3804	0.998	227	0%	194	14.9%	-	-	-	-	-	HMMPfam_Dynein_heavy
KIAA0556	23247	genome.wustl.edu	37	16	27789932	27789932	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.T1613	0.103	91	0%	66	21.2%	-	-	-	-	-	NULL
SLC5A2	6524	genome.wustl.edu	37	16	31501614	31501614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431354	+1	known	p.P619S	0.000	19	0%	27	22.2%	-	-	-	-	-	NULL
IGHV3OR16-8	388255	genome.wustl.edu	37	16	33647270	33647270	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000438532	-1	known	p.T110	0.995	125	0%	120	23.3%	-	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
TOX3	27324	genome.wustl.edu	37	16	52484450	52484450	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080430.2	-1	reviewed	p.S139	1.000	74	0%	83	21.7%	-	-	-	-	-	NULL
POLR2C	5432	genome.wustl.edu	37	16	57503632	57503632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032940.2	+1	reviewed	p.R133Q	1.000	89	0%	56	16.1%	-	-	possibly_damaging(0.91)	tolerated(0.43)	neutral(0.376)	superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMPfam_RNA_pol_A_bac,superfamily_Insert subdomain of RNA polymerase alpha subunit,HMMSmart_SM00662
ZNF319	57567	genome.wustl.edu	37	16	58030956	58030956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020807.1	-1	provisional	p.Q405R	1.000	43	0%	35	11.4%	-	-	possibly_damaging(0.935)	deleterious(0.04)	deleterious(0.730)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
B3GNT9	84752	genome.wustl.edu	37	16	67183837	67183837	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033309.2	-1	validated	p.A184	0.286	24	0%	13	30.8%	-	-	-	-	-	HMMPfam_Galactosyl_T
NFAT5	10725	genome.wustl.edu	37	16	69726420	69726422	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138713.2	+1	reviewed	p.Q901in_frame_del	0.966:0.976:0.988	-	-	-	-	-	-	-	-	-	NULL
HYDIN	54768	genome.wustl.edu	37	16	71218887	71218887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032821.2	-1	validated	p.P48S	1.000	160	0%	104	17.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MARVELD3	91862	genome.wustl.edu	37	16	71674575	71674575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017967.2	+1	validated	p.T293I	0.000	66	0%	50	22%	-	-	possibly_damaging(0.803)	tolerated(0.3)	neutral(0.331)	HMMPfam_MARVEL
PHLPP2	23035	genome.wustl.edu	37	16	71683657	71683657	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015020.2	-1	validated	p.G1036	0.091	121	0%	118	16.1%	-	-	-	-	-	NULL
WWOX	51741	genome.wustl.edu	37	16	78458921	78458921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016373.1	+1	reviewed	p.R254S	1.000	146	0%	116	22.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
KIAA0182	23199	genome.wustl.edu	37	16	85691002	85691002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014615.2	+1	validated	p.P478S	1.000	75	0%	33	21.2%	-	-	probably_damaging(1)	tolerated(0.46)	deleterious(0.512)	NULL
TIMM22	29928	genome.wustl.edu	37	17	902174	902174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013337.2	+1	provisional	p.V132M	1.000	450	0%	467	20.6%	-	-	possibly_damaging(0.898)	deleterious(0.03)	deleterious(0.719)	HMMPfam_Tim17
RTN4RL1	146760	genome.wustl.edu	37	17	1840573	1840573	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178568.2	-1	validated	p.H181	0.820	27	0%	23	21.7%	-	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
SGSM2	9905	genome.wustl.edu	37	17	2270614	2270614	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014853.2	+1	validated	p.D446	1.000	64	0%	32	28.1%	-	-	-	-	-	NULL
KIAA0664	23277	genome.wustl.edu	37	17	2594035	2594035	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015229.3	-1	validated	p.A1261	0.947	29	0%	34	35.3%	-	-	-	-	-	NULL
ZZEF1	23140	genome.wustl.edu	37	17	3954272	3954272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015113.3	-1	validated	p.R1889M	1.000	105	0%	82	14.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPNS3	201305	genome.wustl.edu	37	17	4356393	4356393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182538.4	+1	validated	p.V336I	0.804	103	0%	68	22.1%	-	-	benign(0.081)	tolerated(0.4)	neutral(0.022)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
DNAH2	146754	genome.wustl.edu	37	17	7720984	7720984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020877.2	+1	validated	p.A3376T	0.927	71	0%	56	16.1%	-	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
CHD3	1107	genome.wustl.edu	37	17	7809893	7809893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005271.2	+1	reviewed	p.R1520C	1.000	106	0%	92	19.6%	-	-	probably_damaging(1)	-	-	HMMPfam_DUF1086
MFSD6L	162387	genome.wustl.edu	37	17	8701063	8701063	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152599.3	-1	validated	p.P459L	0.982	34	0%	43	23.3%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_MFS_gen_substrate_transporter
MYH2	4620	genome.wustl.edu	37	17	10435045	10435045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100112.1	-1	reviewed	p.E868K	0.848	379	0.3%	349	15.8%	-	-	benign(0)	tolerated(0.91)	-	NULL
ENSG00000205325	0	genome.wustl.edu	37	17	14673508	14673508	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000379640	-1	known	p.R119M	0.000	161	0%	138	18.1%	-	-	unknown(0)	-	-	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26970297	26970297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014680.2	-1	validated	p.R94H	0.999	136	0%	113	19.5%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SLC35G3	146861	genome.wustl.edu	37	17	33521168	33521168	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152462.2	-1	validated	p.F53	1.000	150	0%	154	11.7%	-	-	-	-	-	HMMPfam_DUF6
MRM1	79922	genome.wustl.edu	37	17	34958427	34958427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024864.3	+1	validated	p.Q63R	1.000	23	0%	24	29.2%	-	-	benign(0)	tolerated(1)	-	HMMPfam_SpoU_sub_bind,superfamily_L30e-like
STXBP4	252983	genome.wustl.edu	37	17	53155450	53155450	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178509.5	+1	validated	p.Q400H	0.977	123	0%	110	10.9%	-	-	benign(0.036)	deleterious(0.01)	neutral(0.408)	NULL
ERN1	2081	genome.wustl.edu	37	17	62149355	62149355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001433.3	-1	reviewed	p.Y155C	1.000	88	0%	101	12.9%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564
DDX5	1655	genome.wustl.edu	37	17	62496409	62496409	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004396.3	-1	validated	p.R493S	1.000	106	0%	77	23.4%	-	-	benign(0.055)	tolerated(0.42)	neutral(0.018)	NULL
GNA13	10672	genome.wustl.edu	37	17	63010509	63010509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006572.4	-1	validated	p.R334C	1.000	188	0%	135	14.1%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
AXIN2	8313	genome.wustl.edu	37	17	63554093	63554093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004655.3	-1	reviewed	p.G216R	1.000	180	0%	141	15.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ABCA8	10351	genome.wustl.edu	37	17	66914189	66914189	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007168.2	-1	reviewed	p.A642	0.678	198	0%	142	14.8%	-	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
TNRC6C	57690	genome.wustl.edu	37	17	76082939	76082939	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142640.1	+1	validated	p.A1186	1.000	30	3.3%	40	27.5%	-	-	-	-	-	NULL
RBFOX3	146713	genome.wustl.edu	37	17	77102736	77102736	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082575.1	-1	validated	p.F119	0.994	54	0%	50	16%	-	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
RNF213	57674	genome.wustl.edu	37	17	78341844	78341844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.R4019H	0.000	142	0%	124	21%	-	-	possibly_damaging(0.738)	deleterious(0.01)	deleterious(0.675)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
RNF213	57674	genome.wustl.edu	37	17	78360198	78360198	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000508628	+1	known	p.Y4896	0.015	67	0%	67	32.8%	-	-	-	-	-	NULL
MYOM1	8736	genome.wustl.edu	37	18	3102488	3102488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003803.3	-1	reviewed	p.E1187K	1.000	168	0%	145	19.3%	-	-	benign(0.122)	tolerated(0.34)	neutral(0.033)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ANKRD12	23253	genome.wustl.edu	37	18	9254369	9254369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015208.3	+1	validated	p.D368E	0.998	166	0%	128	21.1%	-	-	benign(0)	tolerated(1)	-	superfamily_Ankyrin repeat
CHMP1B	57132	genome.wustl.edu	37	18	11851766	11851766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020412.4	+1	validated	p.G86C	1.000	73	0%	58	20.7%	-	-	possibly_damaging(0.691)	deleterious(0)	deleterious(0.692)	HMMPfam_Snf7
IMPA2	3613	genome.wustl.edu	37	18	12009941	12009941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014214.1	+1	validated	p.T97M	1.000	80	0%	61	24.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Inositol_P,superfamily_Carbohydrate phosphatase
ANKRD30B	374860	genome.wustl.edu	37	18	14784484	14784484	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145029.1	+1	validated	p.T541I	0.024	555	0%	507	21.5%	-	-	benign(0.238)	deleterious(0)	deleterious(0.469)	NULL
KIAA1328	57536	genome.wustl.edu	37	18	34646956	34646956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020776.1	+1	validated	p.P227H	0.005	150	0%	156	16.7%	-	-	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	NULL
RNF152	220441	genome.wustl.edu	37	18	59483488	59483488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173557.2	-1	validated	p.P70L	1.000	114	0%	107	14%	-	-	probably_damaging(0.998)	tolerated(0.1)	deleterious(0.761)	superfamily_SSF57850
RTTN	25914	genome.wustl.edu	37	18	67781709	67781709	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173630.3	-1	validated	p.L1219V	1.000	205	0%	128	11.7%	-	-	probably_damaging(0.99)	tolerated(0.32)	neutral(0.466)	NULL
MADCAM1	8174	genome.wustl.edu	37	19	501681	501681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130760.2	+1	reviewed	p.P227L	0.223	155	0%	128	15.6%	-	-	unknown(0)	tolerated(0.5)	-	superfamily_Immunoglobulin
REXO1	57455	genome.wustl.edu	37	19	1828055	1828055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020695.3	-1	validated	p.L245I	0.909	43	0%	30	33.3%	-	-	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	NULL
EEF2	1938	genome.wustl.edu	37	19	3984224	3984225	+	Frame_Shift_Ins	INS	-	-	CCTT	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001961.3	-1	reviewed	p.A43fs	0.998:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases
UHRF1	29128	genome.wustl.edu	37	19	4950882	4950882	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398240	+1	known	p.Y577	1.000	114	0%	110	20.9%	-	-	-	-	-	HMMPfam_YDG_SRA,HMMSmart_SM00466
CLPP	8192	genome.wustl.edu	37	19	6366340	6366340	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006012.2	+1	reviewed	p.Y209	0.246	190	0%	125	17.6%	-	-	-	-	-	HMMPfam_CLP_protease,superfamily_SSF52096
VAV1	7409	genome.wustl.edu	37	19	6854030	6854030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005428.2	+1	reviewed	p.S802L	1.000	93	0%	93	21.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,superfamily_SSF55550
MUC16	94025	genome.wustl.edu	37	19	9086934	9086934	+	Silent	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.S1627	0.000	298	0.7%	265	19.6%	-	-	-	-	-	NULL
DNM2	1785	genome.wustl.edu	37	19	10940819	10940819	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005360.1	+1	reviewed	p.R770*	1.000	110	0.9%	72	19.4%	-	-	-	-	-	NULL
PRKCSH	5589	genome.wustl.edu	37	19	11548937	11548937	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002743.2	+1	reviewed	p.N114	1.000	84	0%	85	18.8%	-	-	-	-	-	NULL
TNPO2	30000	genome.wustl.edu	37	19	12822205	12822205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136196.1	-1	validated	p.R341H	1.000	118	0%	106	21.7%	-	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	superfamily_ARM repeat
RNASEH2A	10535	genome.wustl.edu	37	19	12918291	12918291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006397.2	+1	reviewed	p.A128T	0.992	153	0%	135	19.3%	-	-	benign(0.033)	tolerated(0.12)	neutral(0.262)	HMMPfam_RNase_HII,superfamily_Ribonuclease H-like
MAST1	22983	genome.wustl.edu	37	19	12963053	12963053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014975.2	+1	validated	p.P334H	1.000	46	0%	47	19.1%	-	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	HMMPfam_DUF1908
ANO8	57719	genome.wustl.edu	37	19	17438610	17438610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020959.2	-1	validated	p.A769V	1.000	56	0%	29	24.1%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_DUF590
UNC13A	23025	genome.wustl.edu	37	19	17738353	17738353	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080421.2	-1	validated	p.N1383	0.996	48	0%	34	11.8%	-	-	-	-	-	HMMPfam_DUF1041
KIAA1683	80726	genome.wustl.edu	37	19	18368163	18368163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145304.1	-1	validated	p.W1311R	0.982	80	0%	49	10.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
UPF1	5976	genome.wustl.edu	37	19	18976928	18976928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002911.3	+1	reviewed	p.R1105W	1.000	52	0%	35	25.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SUGP2	10147	genome.wustl.edu	37	19	19120924	19120924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017392.3	-1	reviewed	p.A693V	0.006	61	0%	50	28%	-	-	benign(0)	tolerated(1)	-	NULL
GATAD2A	54815	genome.wustl.edu	37	19	19606898	19606898	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017660.3	+1	provisional	p.P265L	1.000	89	0%	62	27.4%	-	-	probably_damaging(1)	tolerated(1)	deleterious(0.500)	NULL
ZNF43	7594	genome.wustl.edu	37	19	21991969	21991969	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003423.2	-1	validated	p.E290D	0.771	89	0%	99	24.2%	-	-	possibly_damaging(0.807)	tolerated(0.14)	deleterious(0.553)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF43	7594	genome.wustl.edu	37	19	21992137	21992137	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003423.2	-1	validated	p.E234D	0.867	115	0%	113	19.5%	-	-	possibly_damaging(0.845)	tolerated(0.06)	deleterious(0.647)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TMEM147	10430	genome.wustl.edu	37	19	36037642	36037642	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032635.2	+1	provisional	p.A92	0.983	87	0%	70	17.1%	-	-	-	-	-	HMMPfam_DUF2053
ZNF540	163255	genome.wustl.edu	37	19	38103388	38103388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152606.3	+1	validated	p.T403A	0.003	126	0%	120	20%	-	-	possibly_damaging(0.574)	tolerated(0.48)	neutral(0.208)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RYR1	6261	genome.wustl.edu	37	19	39019006	39019006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000540.2	+1	reviewed	p.R3629W	0.999	31	0%	49	32.7%	-	-	probably_damaging(1)	-	-	NULL
CAPN12	147968	genome.wustl.edu	37	19	39233142	39233142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144691.3	-1	validated	p.A112T	1.000	103	0%	99	19.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
ARHGAP35	2909	genome.wustl.edu	37	19	47502597	47502597	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004491.4	+1	reviewed	p.K1358T	1.000	118	0%	130	19.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
SAE1	10055	genome.wustl.edu	37	19	47706933	47706933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000270225	+1	known	p.C295Y	1.000	360	0%	313	19.2%	-	-	benign(0.223)	deleterious(0.01)	neutral(0.428)	superfamily_Activating enzymes of the ubiquitin-like proteins
TRPM4	54795	genome.wustl.edu	37	19	49703585	49703585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017636.2	+1	provisional	p.R892C	1.000	107	0%	100	19%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans
MED25	81857	genome.wustl.edu	37	19	50335634	50335635	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030973.3	+1	reviewed	p.L483fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SIGLEC14	100049587	genome.wustl.edu	37	19	52149234	52149234	+	Silent	SNP	T	T	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098612.1	-1	validated	p.P167	0.000	103	0%	90	20%	-	-	-	-	-	HMMPfam_ig,superfamily_SSF48726
ZNF600	162966	genome.wustl.edu	37	19	53269459	53269459	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198457.2	-1	validated	p.R517H	0.397	171	0%	183	18.6%	-	-	benign(0.011)	tolerated(0.15)	neutral(0.241)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF274	10782	genome.wustl.edu	37	19	58718313	58718313	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424679	+1	known	p.R161	0.124	38	0%	37	27%	-	-	-	-	-	HMMPfam_SCAN,HMMSmart_SM00431
ANKRD5	63926	genome.wustl.edu	37	20	10025147	10025147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022096.4	+1	validated	p.R218G	0.987	280	0%	231	16.9%	-	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
EFCAB8	388795	genome.wustl.edu	37	20	31506228	31506228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440534	+1	known	p.R708W	0.000	80	0%	69	10.1%	-	-	probably_damaging(0.986)	deleterious(0.02)	deleterious(0.818)	NULL
MIR499A	574501	genome.wustl.edu	37	20	33578188	33578188	+	RNA	SNP	C	C	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384903	+1	known	NULL	0.995	63	0%	44	38.6%	-	-	-	-	-	-
FAM65C	140876	genome.wustl.edu	37	20	49204376	49204376	+	Silent	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080829.2	-1	predicted	p.A901	0.245	51	0%	32	25%	-	-	-	-	-	NULL
PCK1	5105	genome.wustl.edu	37	20	56140618	56140618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002591.3	+1	reviewed	p.R543W	0.953	71	0%	66	21.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PEPCK,superfamily_SSF53795
LAMA5	3911	genome.wustl.edu	37	20	60890195	60890195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005560.3	-1	reviewed	p.V2646M	0.230	19	0%	20	20%	-	-	possibly_damaging(0.861)	deleterious(0.01)	deleterious(0.739)	HMMPfam_Laminin_II
MRPL39	54148	genome.wustl.edu	37	21	26978910	26978910	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080794.3	-1	reviewed	p.R44Q	0.999	148	0%	135	14.8%	-	-	benign(0.267)	tolerated(0.16)	neutral(0.087)	NULL
HUNK	30811	genome.wustl.edu	37	21	33371224	33371224	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014586.1	+1	validated	p.H624	0.992	64	0%	50	24%	-	-	-	-	-	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47692708	47692708	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003906.3	-1	reviewed	p.T744	0.982	66	0%	47	25.5%	-	-	-	-	-	HMMPfam_SAC3_GANP
CLTCL1	8218	genome.wustl.edu	37	22	19230452	19230452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007098.3	-1	reviewed	p.R176H	1.000	125	0%	113	20.4%	-	-	benign(0.107)	tolerated(0.06)	neutral(0.331)	HMMPfam_Clathrin_propel,superfamily_Clathrin heavy-chain terminal domain
SEPT5	5413	genome.wustl.edu	37	22	19709217	19709217	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002688.4	+1	reviewed	p.Q258*	0.993	48	0%	33	12.1%	-	-	-	-	-	HMMPfam_Septin,superfamily_SSF52540
SMARCB1	6598	genome.wustl.edu	37	22	24143232	24143232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003073.3	+1	reviewed	p.R155H	1.000	103	0%	90	25.6%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_SNF5
GGT1	2678	genome.wustl.edu	37	22	25007109	25007109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032364.2	+1	reviewed	p.G21S	0.087	76	0%	44	20.5%	-	-	benign(0.099)	tolerated(0.55)	neutral(0.014)	NULL
CRYBB1	1414	genome.wustl.edu	37	22	27008079	27008079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001887.3	-1	reviewed	p.R86C	0.860	63	0%	51	25.5%	-	-	benign(0.127)	tolerated(0.25)	neutral(0.048)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
DEPDC5	9681	genome.wustl.edu	37	22	32217606	32217606	+	Silent	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000433147	+1	known	p.S61P	0.963	74	0%	63	15.9%	-	-	-	-	-	NULL
TIMP3	7078	genome.wustl.edu	37	22	33255314	33255314	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000362.4	+1	reviewed	p.R196*	1.000	56	0%	45	15.6%	-	-	-	-	-	superfamily_TIMP-like
RBFOX2	23543	genome.wustl.edu	37	22	36205826	36205826	+	Splice_Site	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001082578.1	-1	reviewed	e3+1	1.000	401	0.5%	338	18.6%	-	-	-	-	-	-
KCNJ4	3761	genome.wustl.edu	37	22	38823767	38823767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004981.1	-1	reviewed	p.A124V	1.000	33	0%	18	27.8%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_IRK,superfamily_SSF81324
MCAT	27349	genome.wustl.edu	37	22	43529321	43529321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173467.4	-1	reviewed	p.V301I	1.000	109	0%	90	17.8%	-	-	probably_damaging(0.992)	tolerated(0.13)	deleterious(0.700)	HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like
PKDREJ	10343	genome.wustl.edu	37	22	46655216	46655216	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006071.1	-1	reviewed	p.V1335D	0.029	94	0%	79	20.3%	-	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
SHANK3	85358	genome.wustl.edu	37	22	51143398	51143398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080420.1	+1	reviewed	p.G651R	1.000	100	0%	75	29.3%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
AKAP17A	8227	genome.wustl.edu	37	X	1718128	1718128	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005088.2	+1	validated	p.E319*	0.970	103	0%	85	20%	-	-	-	-	-	NULL
RPS6KA3	6197	genome.wustl.edu	37	X	20212320	20212320	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004586.2	-1	reviewed	p.R158H	1.000	226	0%	147	20.4%	-	-	probably_damaging(1)	tolerated(0.67)	deleterious(0.502)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CNKSR2	22866	genome.wustl.edu	37	X	21627228	21627228	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014927.3	+1	reviewed	p.R729*	1.000	61	0%	44	27.3%	-	-	-	-	-	NULL
DCAF8L1	139425	genome.wustl.edu	37	X	27998497	27998498	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017930.1	-1	reviewed	p.D318fs	0.996:0.990	-	-	-	-	-	-	-	-	-	superfamily_WD40_like
TAB3	257397	genome.wustl.edu	37	X	30870992	30870992	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152787.3	-1	reviewed	p.E538G	1.000	265	0%	211	20.4%	-	-	possibly_damaging(0.947)	tolerated(0.14)	deleterious(0.640)	NULL
RBM10	8241	genome.wustl.edu	37	X	47045764	47045764	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005676.3	+1	reviewed	p.Q882R	1.000	49	0%	49	14.3%	-	-	possibly_damaging(0.764)	deleterious(0.01)	deleterious(0.689)	HMMPfam_G-patch,HMMSmart_SM00443
UBA1	7317	genome.wustl.edu	37	X	47060384	47060384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003334.3	+1	reviewed	p.T191M	1.000	110	0%	102	14.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ThiF,superfamily_MoeB
UBA1	7317	genome.wustl.edu	37	X	47069479	47069479	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003334.3	+1	reviewed	p.S719L	0.879	49	0%	62	16.1%	-	-	benign(0.062)	tolerated(0.1)	neutral(0.290)	superfamily_MoeB
KCND1	3750	genome.wustl.edu	37	X	48825859	48825859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004979.4	-1	reviewed	p.P274S	1.000	54	0%	55	12.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
GSPT2	23708	genome.wustl.edu	37	X	51488280	51488280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018094.4	+1	reviewed	p.R520C	1.000	241	0%	215	19.5%	-	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	HMMPfam_GTP_EFTU_D3,superfamily_Elong_init_C
KDM5C	8242	genome.wustl.edu	37	X	53224555	53224555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004187.3	-1	reviewed	p.G1053D	1.000	147	0%	130	17.7%	-	-	benign(0.03)	tolerated(0.53)	neutral(0.009)	HMMPfam_PLU-1
IQSEC2	23096	genome.wustl.edu	37	X	53279553	53279553	+	Silent	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111125.1	-1	validated	p.Q735	1.000	74	0%	49	26.5%	-	-	-	-	-	NULL
WNK3	65267	genome.wustl.edu	37	X	54259388	54259388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020922.4	-1	reviewed	p.R1565H	1.000	282	0%	201	18.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ITIH6	347365	genome.wustl.edu	37	X	54785188	54785188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198510.2	-1	reviewed	p.R440H	1.000	97	0%	52	17.3%	-	-	benign(0.046)	deleterious(0.03)	neutral(0.367)	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
ZXDA	7789	genome.wustl.edu	37	X	57935669	57935669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007156.4	-1	reviewed	p.C396R	1.000	284	0%	243	21%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LAS1L	81887	genome.wustl.edu	37	X	64744126	64744126	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031206.4	-1	validated	p.N370	0.006	47	0%	36	16.7%	-	-	-	-	-	NULL
KIF4A	24137	genome.wustl.edu	37	X	69639595	69639595	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012310.4	+1	reviewed	p.S1153G	0.742	143	0.7%	135	14.8%	-	-	benign(0.228)	deleterious(0.01)	neutral(0.428)	NULL
ACRC	93953	genome.wustl.edu	37	X	70823866	70823866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052957.4	+1	validated	p.D247N	0.006	172	0%	173	16.2%	-	-	unknown(0)	tolerated(0.13)	-	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101138793	101138793	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011657.2	-1	reviewed	p.Q536*	0.371	674	0%	560	19.3%	-	-	-	-	-	NULL
NKRF	55922	genome.wustl.edu	37	X	118726363	118726363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017544.3	-1	reviewed	p.H33R	1.000	321	0%	251	21.1%	-	-	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
CUL4B	8450	genome.wustl.edu	37	X	119672056	119672056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003588.3	-1	reviewed	p.A639T	1.000	223	0%	189	21.2%	-	-	benign(0.015)	tolerated(0.45)	neutral(0.013)	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
STAG2	10735	genome.wustl.edu	37	X	123196778	123196778	+	Silent	SNP	A	A	G	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.T555	0.303	206	0%	167	19.8%	-	-	-	-	-	superfamily_ARM-type_fold
DCAF12L1	139170	genome.wustl.edu	37	X	125686197	125686197	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178470.4	-1	reviewed	p.R132H	0.000	74	0%	78	23.1%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_WD40_like
F9	2158	genome.wustl.edu	37	X	138643994	138643994	+	Nonsense_Mutation	SNP	C	C	T	rs137852261		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000133.3	+1	reviewed	p.R384*	0.749	163	0%	129	19.4%	-	-	-	-	-	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
FMR1NB	158521	genome.wustl.edu	37	X	147106456	147106456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152578.2	+1	validated	p.R235Q	0.000	213	0%	183	13.1%	-	-	probably_damaging(0.997)	tolerated(0.41)	deleterious(0.481)	NULL
HCFC1	3054	genome.wustl.edu	37	X	153220633	153220633	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BS-A0UL-01	TCGA-BS-A0UL-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005334.2	-1	reviewed	p.R1073*	0.162	144	0%	127	21.3%	-	-	-	-	-	NULL
