Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
MTF1	4520	genome.wustl.edu	37	1	38305669	38305669	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005955.2	-1	reviewed	p.H190	0.766	208	0%	83	22.9%	10	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EVI5	7813	genome.wustl.edu	37	1	93089830	93089830	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005665.4	-1	validated	p.E561V	1.000	347	0.3%	153	34%	5	60%	possibly_damaging(0.637)	deleterious(0.02)	deleterious(0.606)	NULL
CNST	163882	genome.wustl.edu	37	1	246784919	246784919	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152609.2	+1	validated	p.P190T	1.000	119	0.8%	114	25.4%	18	16.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
OR2W5	441932	genome.wustl.edu	37	1	247654488	247654488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004698.2	+1	validated	p.R20Q	0.002	339	0%	325	23.4%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
LOC100289480	100289480	genome.wustl.edu	37	3	32611934	32611934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342324.1	+1	model	p.G11D	0.934	8	0.000	18	0.389	2	50%	-	-	-	NULL
XIRP1	165904	genome.wustl.edu	37	3	39230143	39230143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194293.2	-1	provisional	p.A265V	0.596	24	0%	42	47.6%	0	-	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMPfam_Xin
CCDC51	79714	genome.wustl.edu	37	3	48474424	48474424	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024661.3	-1	validated	p.L210	1.000	49	0%	66	37.9%	18	50%	-	-	-	NULL
LAMB2	3913	genome.wustl.edu	37	3	49168415	49168415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002292.3	-1	reviewed	p.A295T	0.998	100	0%	98	25.5%	54	40.7%	possibly_damaging(0.659)	tolerated(0.1)	deleterious(0.519)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196
MME	4311	genome.wustl.edu	37	3	154858008	154858008	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000902.3	+1	reviewed	p.D295V	1.000	70	0%	28	46.4%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
N4BP2	55728	genome.wustl.edu	37	4	40124796	40124796	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000513269	+1	known	p.E1063K	0.999	270	0%	147	39.5%	1	100%	-	-	-	NULL
METTL14	57721	genome.wustl.edu	37	4	119610560	119610561	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020961.2	+1	provisional	p.K65fs	1.000:0.987	-	-	-	-	-	-	-	-	-	NULL
METTL14	57721	genome.wustl.edu	37	4	119626803	119626803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020961.2	+1	provisional	p.R298P	1.000	198	0%	106	39.6%	17	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MT-A70
USP38	84640	genome.wustl.edu	37	4	144127340	144127340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032557.5	+1	validated	p.Y455C	1.000	187	0%	57	43.9%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,PatternScan_UCH_2_1,superfamily_Cysteine proteinases
MCTP1	79772	genome.wustl.edu	37	5	94114835	94114835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024717.4	-1	validated	p.E864*	1.000	321	0%	128	48.4%	0	-	-	-	-	NULL
PSD2	84249	genome.wustl.edu	37	5	139193808	139193808	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032289.2	+1	provisional	p.S292*	1.000	46	0%	38	31.6%	0	-	-	-	-	HMMPfam_Sec7,HMMSmart_SM00222
FAT2	2196	genome.wustl.edu	37	5	150946215	150946215	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.E760*	0.932	99	0%	44	40.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
HIST1H2AM	8336	genome.wustl.edu	37	6	27860699	27860699	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003514.2	-1	reviewed	p.T77A	1.000	171	0%	210	36.2%	4	75%	benign(0.01)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
C6orf132	647024	genome.wustl.edu	37	6	42073045	42073045	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000341865	-1	known	p.R869C	0.436	77	0%	124	39.5%	22	45.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FNDC1	84624	genome.wustl.edu	37	6	159636010	159636010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032532.2	+1	validated	p.R165H	0.011	86	0%	41	46.3%	0	-	unknown(0)	tolerated(0.13)	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
TRRAP	8295	genome.wustl.edu	37	7	98574219	98574219	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000456197	+1	known	p.R2406H	0.015	66	0%	77	32.5%	27	33.3%	-	-	-	superfamily_ARM repeat
ASB15	142685	genome.wustl.edu	37	7	123269120	123269120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080928.3	+1	validated	p.V358I	1.000	190	0%	90	34.4%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
UNC5D	137970	genome.wustl.edu	37	8	35631949	35631949	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080872.2	+1	validated	p.K871E	1.000	273	0%	100	41%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain
PXDNL	137902	genome.wustl.edu	37	8	52321236	52321236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144651.4	-1	validated	p.T983M	0.000	30	0%	57	35.1%	0	-	benign(0.03)	tolerated(0.07)	neutral(0.321)	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
SOX17	64321	genome.wustl.edu	37	8	55370985	55370985	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022454.3	+1	reviewed	p.A96G	1.000	16	0%	20	60%	429	45.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
CSMD3	114788	genome.wustl.edu	37	8	113353805	113353805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.Q2185K	1.000	188	0%	101	32.7%	0	-	possibly_damaging(0.598)	tolerated(0.64)	neutral(0.210)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
FAM120A	23196	genome.wustl.edu	37	9	96291907	96291908	+	In_Frame_Ins	INS	-	-	GGCCATTCCTATGGGTGTTTTGTCCTTTTGTCCTTTTTTGAACCATTTTTCTGAGAA	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000375389	+1	known	p.597in_frame_insGCFVLLSFFEPFF*EGHSY	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
NUP214	8021	genome.wustl.edu	37	9	134027252	134027252	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005085.2	+1	reviewed	p.L803	0.973	145	0%	92	31.5%	17	41.1%	-	-	-	NULL
SNORD36C	26813	genome.wustl.edu	37	9	136217712	136217712	+	RNA	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_000016.1	+1	validated	NULL	0.991	51	0%	117	47.9%	6	33.3%	-	-	-	-
PTEN	5728	genome.wustl.edu	37	10	89692904	89692904	+	Missense_Mutation	SNP	C	C	G	rs121909224	byCluster	TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130G	1.000	262	0%	82	35.4%	61	49.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717739	89717739	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.V255G	1.000	182	0.5%	85	34.1%	58	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89720828	89720828	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.A328fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
KNDC1	85442	genome.wustl.edu	37	10	135003102	135003102	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152643.6	+1	validated	p.A481G	1.000	94	0%	131	41.2%	19	26.3%	possibly_damaging(0.93)	tolerated(0.06)	deleterious(0.699)	HMMSmart_SM00750
OR8I2	120586	genome.wustl.edu	37	11	55861593	55861593	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003750.1	+1	provisional	p.A270	0.001	127	0%	54	18.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPP1R32	220004	genome.wustl.edu	37	11	61250125	61250125	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145017.2	+1	validated	e3-2	0.872	32	0%	31	25.8%	3	100%	-	-	-	-
MUS81	80198	genome.wustl.edu	37	11	65633514	65633514	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025128.4	+1	validated	p.P549	0.129	136	0%	539	69.9%	53	0%	-	-	-	NULL
CABP2	51475	genome.wustl.edu	37	11	67287536	67287536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016366.2	-1	reviewed	p.D159N	1.000	40	0%	53	50.9%	0	-	benign(0.026)	deleterious(0.02)	neutral(0.384)	HMMSmart_SM00054,HMMPfam_efhand,superfamily_EF-hand
GRM5	2915	genome.wustl.edu	37	11	88781038	88781038	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143831.2	-1	reviewed	p.M1I	1.000	80	1.3%	47	29.8%	3	33.3%	unknown(0)	tolerated(0.59)	-	NULL
MGAT4C	25834	genome.wustl.edu	37	12	86377334	86377334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013244.3	-1	validated	p.R88C	1.000	191	0%	125	43.2%	0	-	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMPfam_Glyco_transf_54
KLHL1	57626	genome.wustl.edu	37	13	70681490	70681490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020866.2	-1	validated	p.Q114H	0.999	56	0%	48	33.3%	0	-	benign(0.18)	tolerated(0.15)	neutral(0.258)	NULL
ATP11A	23250	genome.wustl.edu	37	13	113510376	113510376	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032189.3	+1	reviewed	p.M799L	0.999	53	0%	48	45.8%	10	60%	possibly_damaging(0.935)	tolerated(0.16)	neutral(0.440)	superfamily_HAD-like,superfamily_Calcium ATPase transmembrane domain M
FERMT2	10979	genome.wustl.edu	37	14	53348116	53348116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134999.1	-1	validated	p.P200S	1.000	202	0%	65	15.4%	3	0%	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	HMMSmart_B41
KIAA0556	23247	genome.wustl.edu	37	16	27585233	27585233	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015202.2	+1	validated	p.R7*	0.971	120	0%	70	25.7%	8	50%	-	-	-	NULL
CTCF	10664	genome.wustl.edu	37	16	67663300	67663300	+	Splice_Site	SNP	G	G	C	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	e8-1	1.000	257	0%	180	43.9%	0	-	-	-	-	-
CDC27	996	genome.wustl.edu	37	17	45219311	45219311	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114091.1	-1	reviewed	p.I493V	1.000	82	2.4%	85	21.2%	14	0%	benign(0.002)	tolerated(0.86)	neutral(0.001)	superfamily_TPR-like
ITGB4	3691	genome.wustl.edu	37	17	73746835	73746835	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000213.3	+1	reviewed	p.L1183	1.000	52	0%	63	49.2%	97	45.3%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SAFB	6294	genome.wustl.edu	37	19	5668295	5668295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002967.2	+1	reviewed	p.R914H	1.000	36	0%	52	42.3%	128	51.5%	unknown(0)	deleterious(0)	-	NULL
ZNF439	90594	genome.wustl.edu	37	19	11978324	11978324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152262.2	+1	provisional	p.A147V	0.001	242	0%	104	46.2%	8	25%	possibly_damaging(0.731)	tolerated(0.13)	deleterious(0.520)	NULL
CHERP	10523	genome.wustl.edu	37	19	16631072	16631072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006387.5	-1	validated	p.R784W	1.000	49	0%	54	42.6%	74	45.9%	unknown(0)	deleterious(0.01)	-	NULL
PSG3	5671	genome.wustl.edu	37	19	43242875	43242875	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021016.3	-1	validated	e2+1	0.052	405	0%	177	36.2%	0	-	-	-	-	-
KLK4	9622	genome.wustl.edu	37	19	51411840	51411840	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004917.3	-1	reviewed	p.A157V	0.000	69	1.4%	51	52.9%	3	0%	benign(0)	deleterious(0.03)	neutral(0.364)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ZBTB45	84878	genome.wustl.edu	37	19	59028407	59028407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032792.2	-1	provisional	p.E212K	0.954	16	0%	12	33.3%	31	51.6%	benign(0.076)	tolerated(0.63)	neutral(0.009)	NULL
TPTE	7179	genome.wustl.edu	37	21	10971324	10971324	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199261.2	-1	validated	p.A11	0.000	204	0%	114	14.9%	0	-	-	-	-	NULL
TFIP11	24144	genome.wustl.edu	37	22	26888032	26888032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008697.1	-1	validated	p.E821K	1.000	67	0%	61	39.3%	61	44.2%	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
ELFN2	114794	genome.wustl.edu	37	22	37769417	37769419	+	In_Frame_Del	DEL	CCT	CCT	-	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052906.3	-1	validated	p.E719in_frame_del	0.834:0.843:1.000	-	-	-	-	-	-	-	-	-	NULL
EP300	2033	genome.wustl.edu	37	22	41568517	41568518	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001429.3	+1	reviewed	p.A1489fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_DUF906
PLXNB2	23654	genome.wustl.edu	37	22	50722387	50722387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012401.2	-1	validated	p.D766N	1.000	17	0%	38	39.5%	140	41.4%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PSI,HMMSmart_PSI
CACNA1F	778	genome.wustl.edu	37	X	49070330	49070330	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005183.2	-1	reviewed	p.D1258	0.994	113	0%	114	33.3%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
P2RY10	27334	genome.wustl.edu	37	X	78216296	78216296	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014499.2	+1	reviewed	p.Y93	1.000	198	0%	81	30.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
NXF2	56001	genome.wustl.edu	37	X	101572362	101572362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017809.3	+1	reviewed	p.R87I	0.000	479	0%	304	18.1%	1	0%	possibly_damaging(0.931)	deleterious(0.01)	deleterious(0.783)	NULL
CT47B1	643311	genome.wustl.edu	37	X	120008793	120008793	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145718.1	-1	validated	p.P244	0.000	193	0%	302	41.1%	0	-	-	-	-	NULL
FHL1	2273	genome.wustl.edu	37	X	135288596	135288596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001449.4	+1	reviewed	p.A2V	0.926	77	0%	37	29.7%	32	0%	benign(0.005)	deleterious(0.01)	neutral(0.406)	NULL
SPANXN4	441525	genome.wustl.edu	37	X	142113856	142113856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZR-01	TCGA-D1-A0ZR-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009613.2	+1	reviewed	p.S19F	0.000	380	0%	169	33.7%	0	-	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
