Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CAMTA1	23261	genome.wustl.edu	37	1	7797001	7797001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015215.1	+1	validated	p.A1092T	1.000	453	0%	257	37%	1	0%	probably_damaging(1)	tolerated(0.41)	deleterious(0.515)	superfamily_Ankyrin repeat
CASZ1	54897	genome.wustl.edu	37	1	10699215	10699235	+	In_Frame_Del	DEL	CTCCTCCTCCGGCAGCTCCAG	CTCCTCCTCCGGCAGCTCCAG	-	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	CTCCTCCTCCGGCAGCTCCAG	CTCCTCCTCCGGCAGCTCCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079843.1	-1	validated	p.LELPEEE1682in_frame_del	0.999:1.000:1.000:1.000:1.000:1.000:0.991:0.988:0.701:0.168:0.007:0.007:0.041:0.047:0.125:0.798:0.944:0.997:1.000:0.998:0.998	-	-	-	-	-	-	-	-	-	NULL
ARID1A	8289	genome.wustl.edu	37	1	27056302	27056302	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.M434fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ZBTB8OS	339487	genome.wustl.edu	37	1	33116096	33116096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178547.2	-1	provisional	p.N24S	1.000	331	0%	303	33.3%	32	50%	benign(0.001)	tolerated(0.38)	neutral(0.018)	NULL
TNS1	7145	genome.wustl.edu	37	2	218712887	218712889	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022648.4	-1	reviewed	p.Q659in_frame_del	1.000:1.000:0.994	-	-	-	-	-	-	-	-	-	NULL
CRELD1	78987	genome.wustl.edu	37	3	9979713	9979713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031717.3	+1	reviewed	p.P128L	0.999	69	0%	54	38.9%	16	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
HRH1	3269	genome.wustl.edu	37	3	11301159	11301159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000861.3	+1	reviewed	p.A146T	0.006	157	0%	132	34.8%	19	68.4%	benign(0.003)	tolerated(0.19)	neutral(0.050)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CTNNB1	1499	genome.wustl.edu	37	3	41266113	41266113	+	Missense_Mutation	SNP	C	C	T	rs121913403	byCluster	TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.S37F	1.000	182	0%	94	33%	287	17.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BBX	56987	genome.wustl.edu	37	3	107491583	107491583	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142568.1	+1	validated	p.E339*	1.000	65	0%	51	33.3%	3	33.3%	-	-	-	NULL
C3orf79	152118	genome.wustl.edu	37	3	153203872	153203872	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001101337.1	+1	provisional	p.I67M	0.006	265	0%	193	36.8%	0	-	unknown(0)	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-D1-A16B-01	TCGA-D1-A16B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.H1047R	1.000	240	0%	146	27.4%	14	35.7%	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMSmart_PI3Kc,superfamily_Kinase_like
CRMP1	1400	genome.wustl.edu	37	4	5838609	5838609	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014809.1	-1	reviewed	p.S445	0.997	139	0%	72	23.6%	5	0%	-	-	-	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556
PARM1	25849	genome.wustl.edu	37	4	75938015	75938015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015393.2	+1	validated	p.A142T	0.000	228	0%	226	23.9%	103	16.5%	benign(0)	tolerated(0.12)	neutral(0.261)	NULL
ALPK1	80216	genome.wustl.edu	37	4	113333026	113333027	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001102406.1	+1	validated	p.A108fs	0.978:0.000	-	-	-	-	-	-	-	-	-	NULL
RBM46	166863	genome.wustl.edu	37	4	155719156	155719156	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144979.3	+1	validated	p.Q115	1.000	406	0%	261	27.6%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
PJA2	9867	genome.wustl.edu	37	5	108673058	108673058	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014819.4	-1	validated	e9-1	1.000	124	0%	97	20.6%	1	100%	-	-	-	-
ODZ2	57451	genome.wustl.edu	37	5	167420045	167420045	+	Silent	SNP	G	G	A	rs146310303	by1000genomes	TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122679.1	+1	inferred	p.P348	0.128	170	0%	90	37.8%	0	-	-	-	-	HMMPfam_Ten_N
EYS	346007	genome.wustl.edu	37	6	65612114	65612114	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	e15-1	0.001	211	0.5%	134	23.9%	0	-	-	-	-	-
ARG1	383	genome.wustl.edu	37	6	131902519	131902519	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000045.2	+1	reviewed	e4+1	1.000	112	0%	91	34.1%	0	-	-	-	-	-
NMBR	4829	genome.wustl.edu	37	6	142409501	142409501	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002511.2	-1	validated	p.V99L	1.000	78	0%	48	37.5%	0	-	possibly_damaging(0.678)	tolerated(0.46)	neutral(0.254)	HMMPfam_7tm_1,superfamily_SSF81321
NMBR	4829	genome.wustl.edu	37	6	142409502	142409502	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002511.2	-1	validated	p.P98	0.106	80	0%	49	38.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
GLI3	2737	genome.wustl.edu	37	7	42004888	42004888	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.Q1261H	0.995	57	0%	43	25.6%	0	-	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	NULL
ABCB4	5244	genome.wustl.edu	37	7	87031487	87031487	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440025	-1	known	p.A67S	0.001	304	0%	214	34.1%	5	40%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SPAM1	6677	genome.wustl.edu	37	7	123599919	123599919	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003117.4	+1	reviewed	p.E476*	0.000	448	0%	318	24.8%	0	-	-	-	-	NULL
ODF1	4956	genome.wustl.edu	37	8	103564137	103564137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024410.3	+1	reviewed	p.R61Q	0.517	452	0%	293	27%	0	-	possibly_damaging(0.827)	deleterious(0)	deleterious(0.758)	NULL
TRIB1	10221	genome.wustl.edu	37	8	126448250	126448250	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025195.2	+1	validated	p.Q220fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
LINGO2	158038	genome.wustl.edu	37	9	27948937	27948937	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152570.1	-1	provisional	p.D578G	1.000	262	0%	183	31.7%	1	100%	benign(0.424)	tolerated(0.11)	neutral(0.409)	NULL
LCN12	286256	genome.wustl.edu	37	9	139848222	139848222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178536.3	+1	validated	p.H108D	0.000	60	0%	41	24.4%	8	87.5%	unknown(0)	tolerated(0.26)	-	HMMPfam_Lipocalin,superfamily_Lipocalins
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R233*	0.984	280	0%	210	30%	43	11.6%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89725047	89725047	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.K344fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
EML3	256364	genome.wustl.edu	37	11	62378369	62378369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153265.2	-1	validated	p.R183Q	0.987	55	0%	37	16.2%	17	23.5%	benign(0.117)	tolerated(0.3)	neutral(0.038)	NULL
FERMT3	83706	genome.wustl.edu	37	11	63987111	63987111	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178443.2	+1	reviewed	p.S337L	0.065	58	0%	62	45.2%	11	0%	probably_damaging(0.954)	tolerated(0.16)	neutral(0.457)	HMMPfam_FERM_M,HMMSmart_SM00295
MRE11A	4361	genome.wustl.edu	37	11	94203801	94203801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005591.3	-1	reviewed	p.G285C	1.000	267	0%	195	15.4%	9	11.1%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Mre11_DNA_bind,superfamily_Metallo-dependent phosphatases
CADM1	23705	genome.wustl.edu	37	11	115047265	115047265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014333.3	-1	validated	p.A420T	1.000	733	0%	561	15%	216	13.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRMT8	56341	genome.wustl.edu	37	12	3701431	3701431	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019854.3	+1	validated	p.T338	0.047	582	0%	381	26%	16	37.5%	-	-	-	superfamily_S-adenosyl-L-methionine-dependent methyltransferases
AGAP2	116986	genome.wustl.edu	37	12	58121236	58121236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122772.1	-1	validated	p.T996I	1.000	90	0%	38	23.7%	12	8.3%	benign(0.024)	tolerated(0.47)	neutral(0.012)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
FAM123A	219287	genome.wustl.edu	37	13	25744273	25744273	+	Silent	SNP	C	C	G	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152704.2	-1	validated	p.R495	0.218	39	0%	31	32.3%	0	-	-	-	-	HMMPfam_WTX
LOC643677	643677	genome.wustl.edu	37	13	103386645	103386645	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.P5316T	0.012	364	0%	240	26.3%	0	-	benign(0.005)	-	-	NULL
MAPK1IP1L	93487	genome.wustl.edu	37	14	55529546	55529546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144578.3	+1	validated	p.P77T	1.000	119	0%	62	38.7%	80	48.7%	probably_damaging(0.974)	tolerated(0.05)	deleterious(0.761)	NULL
STARD9	57519	genome.wustl.edu	37	15	42978613	42978613	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001129482.3	+1	model	p.A1527P	0.000	172	0%	103	23.3%	0	-	benign(0.039)	-	-	NULL
TMC5	79838	genome.wustl.edu	37	16	19498557	19498557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105248.1	+1	validated	p.R828W	1.000	205	0.5%	145	31%	37	37.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TMC
RPGRIP1L	23322	genome.wustl.edu	37	16	53706901	53706901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015272.2	-1	reviewed	p.D304N	1.000	259	0%	140	32.9%	4	25%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	NULL
SNTB2	6645	genome.wustl.edu	37	16	69333597	69333597	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006750.3	+1	reviewed	p.P484A	1.000	254	0%	171	36.3%	4	25%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	NULL
FBXO39	162517	genome.wustl.edu	37	17	6683277	6683277	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153230.2	+1	validated	p.W30*	1.000	282	0%	192	31.2%	0	-	-	-	-	HMMPfam_F-box,HMMSmart_FBOX
JMJD6	23210	genome.wustl.edu	37	17	74720071	74720071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001081461.1	-1	reviewed	p.W196C	1.000	284	0%	164	28%	12	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00558,HMMPfam_JmjC,superfamily_Clavaminate synthase-like
LAMA3	3909	genome.wustl.edu	37	18	21534477	21534477	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198129.1	+1	reviewed	p.T3289	0.001	227	0%	129	25.6%	64	14%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
ELAVL1	1994	genome.wustl.edu	37	19	8032470	8032470	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001419.2	-1	reviewed	p.H212R	0.995	164	0%	119	39.5%	137	40.8%	benign(0.01)	tolerated(0.22)	neutral(0.043)	superfamily_RNA-binding domain RBD
CYP4F22	126410	genome.wustl.edu	37	19	15636269	15636269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173483.3	+1	reviewed	p.R41Q	0.000	175	0%	100	32%	0	-	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
NUMBL	9253	genome.wustl.edu	37	19	41173893	41173898	+	In_Frame_Del	DEL	TGCTGT	TGCTGT	-	rs141662737	byCluster;by1000genomes	TCGA-D1-A16B-01	TCGA-D1-A16B-01	TGCTGT	TGCTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004756.3	-1	validated	p.QQ439in_frame_del	1.000:1.000:1.000:1.000:1.000:0.998	-	-	-	-	-	-	-	-	-	NULL
CTSA	5476	genome.wustl.edu	37	20	44520238	44520240	+	In_Frame_Del	DEL	CTG	CTG	-	rs11467527	byCluster;by1000genomes	TCGA-D1-A16B-01	TCGA-D1-A16B-01	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000308.2	+1	reviewed	p.L32in_frame_del	0.155:0.311:0.361	-	-	-	-	-	-	-	-	-	NULL
APP	351	genome.wustl.edu	37	21	27372430	27372430	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000448850	-1	known	p.D233N	1.000	146	0%	70	18.6%	651	24.8%	-	-	-	HMMPfam_Kunitz_BPTI,HMMSmart_SM00131,superfamily_BPTI-like
ZNF280B	140883	genome.wustl.edu	37	22	22842630	22842630	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080764.2	-1	reviewed	p.V365G	0.978	448	0%	308	32.1%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_RING/U-box
DMD	1756	genome.wustl.edu	37	X	31792189	31792189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.R2477Q	0.994	348	0%	215	43.7%	0	-	benign(0.208)	tolerated(0.14)	neutral(0.270)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
HUWE1	10075	genome.wustl.edu	37	X	53574861	53574861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031407.4	-1	reviewed	p.S3470L	0.990	508	0.2%	408	31.6%	73	54.7%	benign(0.043)	tolerated(0.36)	neutral(0.022)	NULL
LOC100288033	100288033	genome.wustl.edu	37	X	70887854	70887854	+	Silent	SNP	C	C	T	rs184717278	by1000genomes	TCGA-D1-A16B-01	TCGA-D1-A16B-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343818.1	+1	model	p.F67	0.000	265	0%	159	27.7%	0	-	-	-	-	NULL
MAGEE1	57692	genome.wustl.edu	37	X	75648566	75648566	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020932.2	+1	reviewed	p.P81	0.250	54	0%	24	29.2%	1	0%	-	-	-	NULL
FMR1	2332	genome.wustl.edu	37	X	147018097	147018097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002024.5	+1	reviewed	p.E319K	1.000	797	0.1%	579	32.5%	12	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
GPR50	9248	genome.wustl.edu	37	X	150349035	150349035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16B-01	TCGA-D1-A16B-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004224.3	+1	reviewed	p.R327H	0.024	138	0%	84	29.8%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
