Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
SAMD11	148398	genome.wustl.edu	37	1	865624	865624	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152486.2	+1	validated	p.S54	0.994	30	0%	22	22.7%	3	0%	-	-	-	NULL
SDF4	51150	genome.wustl.edu	37	1	1158668	1158668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016176.3	-1	validated	p.A178V	1.000	182	0%	139	35.3%	579	41.7%	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
ATAD3A	55210	genome.wustl.edu	37	1	1459249	1459249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018188.3	+1	validated	p.A380T	1.000	72	0%	45	40%	56	19.6%	benign(0.333)	tolerated(0.26)	neutral(0.139)	superfamily_P-loop containing nucleoside triphosphate hydrolases
LZIC	84328	genome.wustl.edu	37	1	9991952	9991952	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032368.3	-1	provisional	p.L171I	1.000	121	0%	131	38.9%	20	40%	benign(0.002)	tolerated(0.59)	neutral(0.004)	HMMPfam_ICAT,superfamily_beta-catenin-interacting protein ICAT
CROCC	9696	genome.wustl.edu	37	1	17296297	17296297	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014675.3	+1	validated	p.A1773	0.994	14	0%	10	40%	35	40%	-	-	-	superfamily_Prefoldin
HSPG2	3339	genome.wustl.edu	37	1	22183821	22183821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374695	-1	known	p.R1784H	0.928	58	0%	57	38.6%	42	16.6%	benign(0.003)	tolerated(0.17)	neutral(0.059)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_V-set,superfamily_Immunoglobulin
CELA3A	10136	genome.wustl.edu	37	1	22333459	22333459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005747.4	+1	reviewed	p.L151I	1.000	90	0%	74	23%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
EPHB2	2048	genome.wustl.edu	37	1	23111224	23111224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004442.6	+1	reviewed	p.V156I	0.990	24	0%	28	21.4%	1	0%	benign(0)	tolerated(0.66)	neutral(0.003)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
TCEB3	6924	genome.wustl.edu	37	1	24078896	24078896	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003198.2	+1	reviewed	e5-1	1.000	175	0%	185	39.5%	1	100%	-	-	-	-
ARID1A	8289	genome.wustl.edu	37	1	27106861	27106861	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006015.4	+1	reviewed	p.R2158*	1.000	50	0%	52	40.4%	48	39.5%	-	-	-	NULL
PTPRU	10076	genome.wustl.edu	37	1	29587254	29587254	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005704.3	+1	reviewed	p.R328H	0.956	46	0%	44	29.5%	11	27.2%	benign(0.004)	tolerated(0.21)	neutral(0.044)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MACF1	23499	genome.wustl.edu	37	1	39797584	39797584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033044.2	+1	reviewed	p.I215T	1.000	108	0%	98	34.7%	1	0%	probably_damaging(0.959)	-	-	HMMPfam_Plectin,HMMSmart_PLEC,superfamily_SSF75399
STIL	6491	genome.wustl.edu	37	1	47716838	47716838	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001048166.1	-1	reviewed	p.K1279	0.965	133	0%	146	34.2%	4	25%	-	-	-	NULL
AGBL4	84871	genome.wustl.edu	37	1	49511293	49511294	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032785.3	-1	validated	p.M186fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases
LRP8	7804	genome.wustl.edu	37	1	53732279	53732279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004631.3	-1	reviewed	p.E431D	0.997	159	0%	126	28.6%	2	50%	possibly_damaging(0.927)	tolerated(0.85)	neutral(0.376)	superfamily_YWTD domain
HOOK1	51361	genome.wustl.edu	37	1	60324706	60324706	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371208	+1	known	p.P460	0.957	62	0%	68	32.4%	1	100%	-	-	-	HMMPfam_HOOK
LRRIQ3	127255	genome.wustl.edu	37	1	74648371	74648371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105659.1	-1	provisional	p.H142Y	1.000	252	0%	223	32.3%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_Outer arm dynein light chain 1
GBP5	115362	genome.wustl.edu	37	1	89729594	89729594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134486.1	-1	validated	p.R396Q	0.116	230	0%	221	34.8%	11	9%	benign(0)	tolerated(1)	-	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
TGFBR3	7049	genome.wustl.edu	37	1	92195521	92195521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003243.3	-1	validated	p.F193S	1.000	297	0.3%	210	29%	3	0%	probably_damaging(1)	tolerated(0.84)	deleterious(0.500)	NULL
TGFBR3	7049	genome.wustl.edu	37	1	92200363	92200363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003243.3	-1	validated	p.A180T	1.000	266	0%	262	24.4%	2	0%	benign(0.01)	tolerated(0.25)	neutral(0.037)	NULL
RPAP2	79871	genome.wustl.edu	37	1	92789201	92789201	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370343	+1	known	p.L242	0.979	254	0%	267	17.6%	1	0%	-	-	-	NULL
SLC6A17	388662	genome.wustl.edu	37	1	110737278	110737278	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010898.2	+1	validated	p.S459	0.006	96	0%	85	29.4%	0	-	-	-	-	HMMPfam_SNF
CSDE1	7812	genome.wustl.edu	37	1	115268938	115268938	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130523.1	-1	validated	p.R527C	1.000	136	0%	161	32.3%	176	28.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPAG17	200162	genome.wustl.edu	37	1	118642319	118642319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206996.2	-1	validated	p.V247M	1.000	138	0%	155	33.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
SCNM1	79005	genome.wustl.edu	37	1	151140723	151140723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024041.2	+1	validated	p.P168T	0.021	90	0%	96	31.2%	73	30.1%	benign(0.008)	tolerated(0.12)	neutral(0.261)	NULL
PI4KB	5298	genome.wustl.edu	37	1	151278829	151278829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002651.1	-1	provisional	p.L410P	1.000	46	0%	62	33.9%	35	31.4%	probably_damaging(0.974)	deleterious(0)	deleterious(0.861)	NULL
DENND4B	9909	genome.wustl.edu	37	1	153903168	153903168	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014856.2	-1	validated	p.R1427M	1.000	55	0%	54	35.2%	6	16.6%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
HAX1	10456	genome.wustl.edu	37	1	154247442	154247442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006118.3	+1	reviewed	p.P174H	1.000	312	0%	344	36%	91	37.3%	unknown(0)	deleterious(0)	-	NULL
HCN3	57657	genome.wustl.edu	37	1	155252279	155252281	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020897.1	+1	validated	p.E121in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Ion_trans_N,superfamily_SSF81324
C1orf85	112770	genome.wustl.edu	37	1	156263368	156263368	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144580.1	-1	provisional	e5-1	0.996	90	0%	78	30.8%	1	100%	-	-	-	-
INSRR	3645	genome.wustl.edu	37	1	156812016	156812016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014215.1	-1	validated	p.M1095I	1.000	130	0%	111	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
INSRR	3645	genome.wustl.edu	37	1	156821477	156821477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014215.1	-1	validated	p.H349Y	0.999	81	0%	53	34%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_Recep_L_domain,superfamily_SSF52058
MNDA	4332	genome.wustl.edu	37	1	158812182	158812182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002432.1	+1	reviewed	p.N80S	0.000	123	0%	138	32.6%	1	0%	benign(0.215)	tolerated(0.17)	neutral(0.080)	HMMPfam_PAAD_DAPIN
PIGM	93183	genome.wustl.edu	37	1	160000288	160000290	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145167.2	-1	reviewed	p.E414in_frame_del	0.000:0.001:0.016	-	-	-	-	-	-	-	-	-	NULL
COPA	1314	genome.wustl.edu	37	1	160275358	160275358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098398.1	-1	reviewed	p.I520N	1.000	168	0%	169	25.4%	76	30.2%	benign(0.355)	deleterious(0)	deleterious(0.557)	HMMPfam_Coatomer_WDAD
POU2F1	5451	genome.wustl.edu	37	1	167341274	167341274	+	Splice_Site	SNP	G	G	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002697.2	+1	provisional	e4+1	1.000	75	0%	83	26.5%	0	-	-	-	-	-
C1orf129	80133	genome.wustl.edu	37	1	170965693	170965693	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000426136	+1	known	p.A68T	0.053	321	0%	333	15%	0	-	-	-	-	NULL
ZNF648	127665	genome.wustl.edu	37	1	182026386	182026386	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009992.1	-1	provisional	p.R254W	0.007	15	0.000	9	0.444	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	superfamily_SSF57667
FAM5C	339479	genome.wustl.edu	37	1	190067567	190067567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199051.1	-1	provisional	p.Y628H	1.000	213	0%	216	33.3%	0	-	probably_damaging(0.981)	deleterious(0.03)	deleterious(0.790)	NULL
ASPM	259266	genome.wustl.edu	37	1	197091601	197091601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018136.4	-1	reviewed	p.T1172M	0.002	115	0%	112	30.4%	0	-	benign(0.026)	deleterious(0)	neutral(0.446)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
LRRN2	10446	genome.wustl.edu	37	1	204587410	204587410	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006338.2	-1	reviewed	p.A571T	0.002	76	1.3%	55	21.8%	12	16.6%	benign(0.221)	tolerated(0.34)	neutral(0.045)	NULL
NFASC	23114	genome.wustl.edu	37	1	204921172	204921172	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000367173	+1	known	p.R18*	1.000	93	0%	99	33.3%	0	-	benign(0)	tolerated(1)	-	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
EPRS	2058	genome.wustl.edu	37	1	220174573	220174573	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004446.2	-1	reviewed	p.P696	0.071	432	0%	435	34.9%	33	36.3%	-	-	-	superfamily_Ribosomal_L25rel
HLX	3142	genome.wustl.edu	37	1	221057831	221057831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021958.3	+1	validated	p.A418T	0.000	45	0%	39	35.9%	4	25%	benign(0.316)	tolerated(0.11)	neutral(0.371)	NULL
H3F3A	3020	genome.wustl.edu	37	1	226259064	226259064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002107.3	+1	reviewed	p.A99T	1.000	233	0%	205	34.1%	246	39%	benign(0.008)	-	-	HMMSmart_SM00428,HMMPfam_Histone,superfamily_Histone-fold
ARF1	375	genome.wustl.edu	37	1	228285050	228285050	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024226.1	+1	reviewed	p.N52	0.702	56	0%	53	32.1%	700	34%	-	-	-	HMMSmart_SM00175,HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases
TTC13	79573	genome.wustl.edu	37	1	231096971	231096971	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024525.4	-1	validated	p.N117S	1.000	155	0%	163	27.6%	6	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ARID4B	51742	genome.wustl.edu	37	1	235345935	235345935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016374.5	-1	reviewed	p.A767T	0.000	276	0%	287	32.4%	1	0%	benign(0)	tolerated(1)	-	NULL
LYST	1130	genome.wustl.edu	37	1	235827867	235827867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000081.2	-1	reviewed	p.H3698R	1.000	94	0%	82	36.6%	4	75%	probably_damaging(0.999)	-	-	superfamily_WD40 repeat-like
OR2G2	81470	genome.wustl.edu	37	1	247751698	247751698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001915.1	+1	provisional	p.A13T	0.003	255	0%	271	40.2%	0	-	benign(0)	tolerated(0.68)	neutral(0.002)	superfamily_SSF81321
PXDN	7837	genome.wustl.edu	37	2	1643087	1643087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012293.1	-1	validated	p.R1354W	0.000	226	0%	228	35.1%	33	0%	benign(0.227)	deleterious(0.01)	neutral(0.428)	NULL
APOB	338	genome.wustl.edu	37	2	21237446	21237446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000384.2	-1	reviewed	p.Q1239R	0.927	167	0%	159	30.2%	0	-	probably_damaging(0.957)	-	-	NULL
KLHL29	114818	genome.wustl.edu	37	2	23916305	23916305	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000288548	+1	known	p.T323M	1.000	23	0%	15	60%	11	45.4%	-	-	-	HMMPfam_BACK
AGBL5	60509	genome.wustl.edu	37	2	27278549	27278549	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021831.5	+1	validated	e6-1	1.000	65	0%	48	31.2%	0	-	-	-	-	-
KHK	3795	genome.wustl.edu	37	2	27320408	27320408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000221.2	+1	reviewed	p.R152Q	1.000	38	0%	20	35%	4	0%	benign(0.103)	tolerated(0.25)	neutral(0.045)	superfamily_Ribokinase-like
CAD	790	genome.wustl.edu	37	2	27449450	27449450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004341.3	+1	reviewed	p.A697T	1.000	125	0%	137	25.5%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CPSase_L_D2,superfamily_SSF56059
PPM1G	5496	genome.wustl.edu	37	2	27606853	27606855	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177983.1	-1	reviewed	p.E311in_frame_del	0.998:0.999:0.999	-	-	-	-	-	-	-	-	-	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
ATL2	64225	genome.wustl.edu	37	2	38526436	38526436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135673.1	-1	validated	p.A388T	1.000	54	0%	50	34%	12	8.3%	benign(0.103)	deleterious(0.02)	neutral(0.391)	superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain
LOC388946	388946	genome.wustl.edu	37	2	46707653	46707653	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145051.1	+1	validated	p.C76Y	0.005	29	0%	26	57.7%	0	-	benign(0.153)	tolerated(0.12)	neutral(0.274)	NULL
USP34	9736	genome.wustl.edu	37	2	61436070	61436072	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014709.3	-1	validated	p.L2961in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
AAK1	22848	genome.wustl.edu	37	2	69741762	69741763	+	In_Frame_Ins	INS	-	-	TGC	rs77547121		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014911.3	-1	reviewed	p.543in_frame_insQ	0.993:1.000	-	-	-	-	-	-	-	-	-	NULL
ALMS1	7840	genome.wustl.edu	37	2	73800037	73800037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015120.4	+1	reviewed	p.R3677L	0.129	55	0%	59	28.8%	3	100%	probably_damaging(0.976)	tolerated(0.18)	deleterious(0.474)	NULL
ITPRIPL1	150771	genome.wustl.edu	37	2	96993611	96993611	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420728	+1	known	p.P446L	0.004	70	0%	55	27.3%	2	0%	-	-	-	NULL
VWA3B	200403	genome.wustl.edu	37	2	98872589	98872589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144992.4	+1	provisional	p.R932H	1.000	113	0%	181	43.1%	0	-	benign(0.017)	deleterious(0.02)	neutral(0.384)	NULL
INPP4A	3631	genome.wustl.edu	37	2	99149902	99149902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134224.1	+1	reviewed	p.V72I	0.999	95	0%	86	37.2%	2	50%	benign(0.408)	tolerated(0.05)	deleterious(0.477)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CREG2	200407	genome.wustl.edu	37	2	102000085	102000085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153836.3	-1	validated	p.Y174C	1.000	136	0%	117	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_FMN_binding
MAP4K4	9448	genome.wustl.edu	37	2	102460762	102460763	+	Frame_Shift_Ins	INS	-	-	GGCTAGAA	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145686.2	+1	reviewed	p.E411fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TFCP2L1	29842	genome.wustl.edu	37	2	121989414	121989414	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014553.2	-1	validated	p.V443	1.000	56	0%	39	38.5%	17	47%	-	-	-	NULL
BIN1	274	genome.wustl.edu	37	2	127864439	127864441	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139343.1	-1	reviewed	p.E27in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
CCNT2	905	genome.wustl.edu	37	2	135712129	135712129	+	Missense_Mutation	SNP	G	G	A	rs190052933	by1000genomes	TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058241.1	+1	reviewed	p.E702K	1.000	166	0%	131	26.7%	13	53.8%	benign(0.052)	deleterious(0.01)	neutral(0.409)	NULL
LRP1B	53353	genome.wustl.edu	37	2	141294224	141294224	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018557.2	-1	validated	p.C2523Y	1.000	141	0%	176	23.9%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,superfamily_SSF63825
NEB	4703	genome.wustl.edu	37	2	152500342	152500342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004543.4	-1	reviewed	p.L2649P	1.000	181	0%	157	38.2%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	HMMPfam_Nebulin,HMMSmart_SM00227
ACVR1	90	genome.wustl.edu	37	2	158637067	158637068	+	Frame_Shift_Ins	INS	-	-	CA	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105.4	-1	reviewed	p.E38fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Activin_recp,superfamily_SSF57302
TBR1	10716	genome.wustl.edu	37	2	162274270	162274270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006593.2	+1	reviewed	p.A259V	1.000	257	0.4%	261	35.2%	0	-	probably_damaging(0.972)	tolerated(0.11)	deleterious(0.685)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd
DNAH7	56171	genome.wustl.edu	37	2	196729215	196729215	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018897.2	-1	validated	p.A2388	0.000	187	0%	199	34.7%	0	-	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD44	91526	genome.wustl.edu	37	2	197943382	197943383	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409153	-1	known	p.T566fs	0.000:0.001	-	-	-	-	-	-	-	-	-	superfamily_ANK
UNC80	285175	genome.wustl.edu	37	2	210824231	210824231	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032504.1	+1	validated	p.L2469	1.000	107	0%	85	36.5%	0	-	-	-	-	NULL
IKZF2	22807	genome.wustl.edu	37	2	213921726	213921726	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016260.2	-1	reviewed	p.S79	1.000	221	0%	200	31.5%	0	-	-	-	-	NULL
SPAG16	79582	genome.wustl.edu	37	2	214181966	214181966	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024532.3	+1	validated	p.V141A	0.000	221	0%	259	29.3%	22	45.4%	benign(0.021)	tolerated(0.75)	neutral(0.003)	superfamily_WD40 repeat-like
USP37	57695	genome.wustl.edu	37	2	219344432	219344432	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020935.2	-1	validated	p.R614	1.000	112	0%	122	32.8%	2	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
CDK5R2	8941	genome.wustl.edu	37	2	219825499	219825499	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003936.3	+1	reviewed	p.T319	0.990	11	0%	18	44.4%	0	-	-	-	-	HMMPfam_CDK5_activator,superfamily_Cyclin_like
STK11IP	114790	genome.wustl.edu	37	2	220479853	220479853	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447191	+1	known	p.R69H	0.638	85	0%	61	37.7%	26	30.7%	-	-	-	NULL
NYAP2	57624	genome.wustl.edu	37	2	226491779	226491779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020864.1	+1	validated	p.V589I	1.000	81	0%	70	41.4%	0	-	unknown(0)	-	-	NULL
NCL	4691	genome.wustl.edu	37	2	232326373	232326378	+	In_Frame_Del	DEL	TCCTCG	TCCTCG	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	TCCTCG	TCCTCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005381.2	-1	reviewed	p.DE166in_frame_del	0.338:0.356:0.047:0.596:0.704:0.401	-	-	-	-	-	-	-	-	-	HMMPfam_FYDLN_acid
ATG16L1	55054	genome.wustl.edu	37	2	234191376	234191376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030803.6	+1	validated	p.T394A	1.000	283	0%	297	34.7%	18	33.3%	unknown(0)	deleterious(0.01)	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
HDAC4	9759	genome.wustl.edu	37	2	240085607	240085607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006037.3	-1	reviewed	p.S168N	1.000	148	0%	173	39.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
KIF1A	547	genome.wustl.edu	37	2	241737138	241737138	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004321.4	-1	reviewed	p.R11Q	1.000	28	0%	18	33.3%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
TADA3	10474	genome.wustl.edu	37	3	9831401	9831401	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006354.2	-1	reviewed	p.N152D	1.000	172	0%	130	40%	76	34.2%	possibly_damaging(0.731)	deleterious(0.03)	deleterious(0.631)	NULL
TATDN2	9797	genome.wustl.edu	37	3	10312102	10312102	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014760.3	+1	validated	p.S412	0.005	62	0%	55	29.1%	14	7.1%	-	-	-	NULL
ATP2B2	491	genome.wustl.edu	37	3	10370590	10370590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001331.2	-1	reviewed	p.D1214N	1.000	184	0%	168	34.5%	15	40%	benign(0.408)	deleterious(0.01)	deleterious(0.538)	NULL
RFTN1	23180	genome.wustl.edu	37	3	16475419	16475419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015150.1	-1	validated	p.E91K	0.003	52	0%	44	38.6%	9	0%	possibly_damaging(0.527)	tolerated(0.91)	neutral(0.178)	NULL
LYZL4	131375	genome.wustl.edu	37	3	42448470	42448470	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144634.2	-1	provisional	p.E54K	0.996	100	0%	95	40%	0	-	probably_damaging(0.953)	deleterious(0)	deleterious(0.841)	HMMPfam_Lys,HMMSmart_LYZ1,superfamily_SSF53955
ZBTB47	92999	genome.wustl.edu	37	3	42701216	42701216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145166.3	+1	validated	p.V81M	1.000	46	0%	47	46.8%	11	36.3%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
ENSG00000250823	0	genome.wustl.edu	37	3	47456815	47456815	+	RNA	SNP	T	T	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000504649	+1	known	NULL	0.000	18	0%	13	38.5%	1	100%	-	-	-	-
SCAP	22937	genome.wustl.edu	37	3	47467577	47467577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012235.2	-1	reviewed	p.V274M	1.000	125	0%	111	31.5%	53	35.8%	possibly_damaging(0.742)	tolerated(0.16)	neutral(0.332)	NULL
CCDC51	79714	genome.wustl.edu	37	3	48476429	48476429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024661.3	-1	validated	p.C37Y	1.000	37	0%	21	23.8%	6	33.3%	benign(0.004)	deleterious(0)	neutral(0.445)	NULL
DOCK3	1795	genome.wustl.edu	37	3	51392335	51392335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004947.3	+1	validated	p.G1377V	1.000	85	0%	57	31.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
VPRBP	9730	genome.wustl.edu	37	3	51456130	51456130	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014703.2	-1	validated	e13+2	1.000	152	0%	109	35.8%	0	-	-	-	-	-
DNAH1	25981	genome.wustl.edu	37	3	52384031	52384031	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015512.4	+1	validated	p.S851	1.000	33	0%	33	33.3%	0	-	-	-	-	NULL
NT5DC2	64943	genome.wustl.edu	37	3	52558748	52558748	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134231.1	-1	validated	e14-1	1.000	45	0%	37	35.1%	3	66.6%	-	-	-	-
ACOX2	8309	genome.wustl.edu	37	3	58502957	58502957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003500.3	-1	reviewed	p.Y609C	1.000	59	0%	73	28.8%	12	33.3%	probably_damaging(0.98)	deleterious(0.01)	deleterious(0.830)	HMMPfam_ACOX,superfamily_AcylCoADH_C_like
CNTN3	5067	genome.wustl.edu	37	3	74418454	74418454	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020872.1	-1	validated	p.F278I	0.993	94	0%	72	26.4%	0	-	benign(0.064)	deleterious(0.01)	neutral(0.410)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
OR5H14	403273	genome.wustl.edu	37	3	97868576	97868576	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005514.1	+1	provisional	p.A116V	0.061	202	0%	187	24.6%	0	-	benign(0.006)	tolerated(0.14)	neutral(0.249)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
PLCXD2	257068	genome.wustl.edu	37	3	111426960	111426960	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153268.3	+1	validated	p.V117	1.000	117	0%	114	28.1%	0	-	-	-	-	superfamily_PLC-like_Pdiesterase_TIM-brl
PLXNA1	5361	genome.wustl.edu	37	3	126723487	126723487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.Y495H	1.000	37	0%	33	39.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat
PLXNA1	5361	genome.wustl.edu	37	3	126739095	126739095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032242.3	+1	validated	p.G1293S	1.000	75	0%	56	41.1%	13	15.3%	benign(0.372)	tolerated(1)	neutral(0.118)	NULL
TMCC1	23023	genome.wustl.edu	37	3	129546680	129546682	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001017395.3	-1	validated	p.A181in_frame_del	0.780:0.875:0.911	-	-	-	-	-	-	-	-	-	NULL
EPHB1	2047	genome.wustl.edu	37	3	134880956	134880956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004441.4	+1	reviewed	p.R507C	1.000	90	0%	53	22.6%	0	-	benign(0.011)	deleterious(0)	neutral(0.445)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TRIM42	287015	genome.wustl.edu	37	3	140407176	140407177	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152616.3	+1	reviewed	p.L553fs	0.000:0.003	-	-	-	-	-	-	-	-	-	NULL
TMEM183B	653659	genome.wustl.edu	37	3	149700002	149700005	+	Frame_Shift_Del	DEL	CAGT	CAGT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CAGT	CAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001079809.1	-1	validated	p.D364fs	1.000:1.000:0.998:1.000	-	-	-	-	-	-	-	-	-	NULL
GMPS	8833	genome.wustl.edu	37	3	155628494	155628494	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003875.2	+1	reviewed	p.E180D	1.000	81	0%	91	33%	13	69.2%	benign(0.004)	tolerated(0.24)	neutral(0.037)	HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like
SI	6476	genome.wustl.edu	37	3	164714344	164714345	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001041.3	-1	reviewed	p.N1557fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_2,superfamily_(Trans)glycosidases
PHC3	80012	genome.wustl.edu	37	3	169831226	169831226	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024947.3	-1	validated	p.V759I	1.000	321	0%	307	26.1%	4	25%	possibly_damaging(0.556)	tolerated(0.46)	neutral(0.202)	NULL
CLDN11	5010	genome.wustl.edu	37	3	170140955	170140955	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005602.5	+1	reviewed	p.Y77	0.713	114	0%	80	36.2%	2	0%	-	-	-	HMMPfam_PMP22_Claudin
NAALADL2	254827	genome.wustl.edu	37	3	175184906	175184906	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207015.2	+1	validated	p.R489	0.878	154	0%	150	36.7%	5	40%	-	-	-	superfamily_Zn-dependent exopeptidases
PIK3CA	5290	genome.wustl.edu	37	3	178927980	178927980	+	Missense_Mutation	SNP	T	T	C	rs121913272		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006218.2	+1	reviewed	p.C420R	1.000	119	0%	120	33.3%	2	50%	probably_damaging(0.992)	tolerated(0.24)	deleterious(0.485)	HMMSmart_C2,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,superfamily_C2_CaLB
HTR3C	170572	genome.wustl.edu	37	3	183773121	183773121	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130770.2	+1	reviewed	p.T86A	1.000	123	0%	176	34.7%	0	-	possibly_damaging(0.758)	tolerated(0.06)	deleterious(0.603)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
CRYGS	1427	genome.wustl.edu	37	3	186256610	186256610	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017541.2	-1	reviewed	p.I138F	0.854	94	0%	95	25.3%	1	0%	possibly_damaging(0.83)	deleterious(0)	deleterious(0.760)	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like
ATP13A4	84239	genome.wustl.edu	37	3	193175186	193175186	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000428352	-1	known	p.P221H	0.291	247	0%	296	35.8%	0	-	-	-	-	superfamily_Metal cation-transporting ATPase ATP-binding domain N
MUC4	4585	genome.wustl.edu	37	3	195490324	195490324	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.S4617R	0.650	15	0%	21	57.1%	16	43.7%	benign(0.418)	-	-	HMMPfam_VWD,HMMSmart_SM00216
LRCH3	84859	genome.wustl.edu	37	3	197562678	197562678	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032773.2	+1	provisional	p.R412	1.000	180	0%	177	25.4%	6	50%	-	-	-	superfamily_SSF52058
MSX1	4487	genome.wustl.edu	37	4	4864611	4864611	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002448.3	+1	reviewed	p.I218K	1.000	9	0.000	12	0.583	824	47.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
SORCS2	57537	genome.wustl.edu	37	4	7731322	7731322	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000507866	+1	known	p.R964C	0.406	56	0%	47	31.9%	1	0%	-	-	-	NULL
ACOX3	8310	genome.wustl.edu	37	4	8372643	8372643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003501.2	-1	validated	p.D659N	0.963	69	0%	48	31.2%	13	7.6%	possibly_damaging(0.865)	tolerated(0.11)	deleterious(0.607)	HMMPfam_ACOX,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
LOC643446	643446	genome.wustl.edu	37	4	11373992	11373992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001130637.2	+1	model	p.D132N	0.996	178	0%	148	39.2%	68	0%	-	-	-	NULL
NCAPG	64151	genome.wustl.edu	37	4	17816537	17816537	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022346.3	+1	validated	p.C202	1.000	200	0%	172	34.3%	6	50%	-	-	-	superfamily_ARM-type_fold
TLR1	7096	genome.wustl.edu	37	4	38800095	38800095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003263.3	-1	reviewed	p.D120N	1.000	159	0%	167	30.5%	2	0%	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
ATP10D	57205	genome.wustl.edu	37	4	47560949	47560949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020453.3	+1	validated	p.S815N	0.000	161	0%	155	32.9%	4	0%	benign(0)	tolerated(1)	-	superfamily_HAD-like,superfamily_Metal cation-transporting ATPase ATP-binding domain N
PPAT	5471	genome.wustl.edu	37	4	57272685	57272685	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002703.3	-1	reviewed	p.V126	0.081	163	0%	202	34.7%	2	50%	-	-	-	HMMPfam_GATase_2,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
EPHA5	2044	genome.wustl.edu	37	4	66197750	66197750	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004439.5	-1	reviewed	p.T983	1.000	154	0%	169	30.2%	0	-	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
UBA6	55236	genome.wustl.edu	37	4	68527865	68527865	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000420827	-1	known	p.L382	0.002	199	0%	250	31.6%	1	0%	-	-	-	NULL
SLC4A4	8671	genome.wustl.edu	37	4	72316141	72316141	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134742.1	+1	reviewed	p.R363	1.000	136	0%	117	31.6%	0	-	-	-	-	HMMPfam_Band_3_cyto,superfamily_PTrfase/Anion_transptr
ANKRD17	26057	genome.wustl.edu	37	4	74017202	74017202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032217.3	-1	reviewed	p.A425V	1.000	169	0%	198	34.3%	8	75%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
G3BP2	9908	genome.wustl.edu	37	4	76571611	76571611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012297.4	-1	validated	p.N363D	1.000	172	0%	162	32.1%	18	33.3%	probably_damaging(0.969)	tolerated(0.13)	deleterious(0.664)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MMRN1	22915	genome.wustl.edu	37	4	90857546	90857546	+	Silent	SNP	G	G	A	rs142031218	by1000genomes	TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007351.2	+1	reviewed	p.A905	0.997	195	0%	181	27.6%	3	0%	-	-	-	NULL
AIMP1	9255	genome.wustl.edu	37	4	107248612	107248612	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142416.1	+1	reviewed	p.L62	0.997	115	0%	108	36.1%	22	40.9%	-	-	-	NULL
EGF	1950	genome.wustl.edu	37	4	110897223	110897223	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001963.4	+1	reviewed	p.Q629*	1.000	187	0%	185	29.2%	0	-	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
PCDH10	57575	genome.wustl.edu	37	4	134073456	134073456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032961.1	+1	reviewed	p.A721T	1.000	89	0%	47	42.6%	0	-	probably_damaging(0.998)	tolerated(0.38)	deleterious(0.492)	NULL
MAB21L2	10586	genome.wustl.edu	37	4	151504557	151504557	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006439.4	+1	reviewed	p.R126C	1.000	56	0%	59	39%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Mab-21
MSMO1	6307	genome.wustl.edu	37	4	166263020	166263020	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006745.3	+1	reviewed	p.W268C	1.000	230	0%	194	33.5%	28	32.1%	possibly_damaging(0.568)	deleterious(0.04)	deleterious(0.543)	NULL
DNAH5	1767	genome.wustl.edu	37	5	13753557	13753557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001369.2	-1	reviewed	p.R3553W	0.968	160	0%	186	34.4%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
RICTOR	253260	genome.wustl.edu	37	5	38991160	38991160	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152756.3	-1	validated	p.A158	1.000	155	0%	139	24.5%	1	0%	-	-	-	superfamily_ARM repeat
CARD6	84674	genome.wustl.edu	37	5	40853754	40853754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032587.3	+1	reviewed	p.A774T	0.002	46	0%	50	32%	4	25%	benign(0)	tolerated(1)	-	NULL
PPWD1	23398	genome.wustl.edu	37	5	64872779	64872779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015342.2	+1	validated	p.R348H	1.000	302	0%	278	37.8%	10	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
HMGCR	3156	genome.wustl.edu	37	5	74651274	74651274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000859.2	+1	reviewed	p.A603T	1.000	210	0%	200	38%	73	41%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_HMG-CoA_red,superfamily_NAD-binding domain of HMG-CoA reductase,superfamily_Substrate-binding domain of HMG-CoA reductase
WDR41	55255	genome.wustl.edu	37	5	76729020	76729020	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018268.2	-1	validated	p.L440	0.926	180	0%	168	31.5%	21	33.3%	-	-	-	NULL
JMY	133746	genome.wustl.edu	37	5	78596069	78596069	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152405.4	+1	validated	p.Q541*	1.000	157	0%	171	33.3%	2	0%	-	-	-	NULL
WDR36	134430	genome.wustl.edu	37	5	110443088	110443088	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139281.2	+1	reviewed	p.A482S	0.012	149	0%	157	34.4%	4	50%	benign(0.01)	tolerated(0.1)	neutral(0.287)	superfamily_WD40_like
ATG12	9140	genome.wustl.edu	37	5	115167544	115167544	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004707.3	-1	validated	p.G174V	1.000	143	0%	162	29%	24	25%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_APG12,superfamily_SSF54236
COMMD10	51397	genome.wustl.edu	37	5	115469829	115469831	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016144.2	+1	provisional	p.P156in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_HCaRG
LMNB1	4001	genome.wustl.edu	37	5	126145880	126145880	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005573.2	+1	reviewed	p.N217	0.877	129	0%	102	38.2%	27	33.3%	-	-	-	HMMPfam_Filament
MEGF10	84466	genome.wustl.edu	37	5	126770452	126770452	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032446.2	+1	validated	p.C638	0.999	60	0%	33	30.3%	0	-	-	-	-	HMMSmart_SM00180,HMMSmart_SM00181
CDC23	8697	genome.wustl.edu	37	5	137542342	137542342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004661.3	-1	reviewed	p.L89P	1.000	105	0%	88	25%	10	20%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_APC8,superfamily_TPR-like
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139828863	139828863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.M405I	1.000	143	0%	139	37.4%	16	62.5%	possibly_damaging(0.899)	tolerated(0.4)	neutral(0.372)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
ANKHD1-EIF4EBP3	404734	genome.wustl.edu	37	5	139908475	139908475	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020690.4	+1	reviewed	p.T1982A	1.000	66	0%	75	36%	30	30%	probably_damaging(0.974)	deleterious(0.01)	deleterious(0.822)	NULL
PCDHA1	56147	genome.wustl.edu	37	5	140167250	140167250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018900.2	+1	reviewed	p.E459K	1.000	60	0%	45	37.8%	0	-	benign(0.141)	tolerated(0.64)	neutral(0.015)	superfamily_Cadherin-like
PCDHA3	56145	genome.wustl.edu	37	5	140182372	140182372	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018906.2	+1	reviewed	p.L530	0.998	33	0%	29	20.7%	8	100%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA3	56145	genome.wustl.edu	37	5	140182540	140182540	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018906.2	+1	reviewed	p.G586	0.013	65	0%	47	29.8%	9	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA5	56143	genome.wustl.edu	37	5	140202443	140202443	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018908.2	+1	reviewed	p.D361	0.933	43	0%	49	34.7%	2	0%	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDHA8	56140	genome.wustl.edu	37	5	140222596	140222596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018911.2	+1	reviewed	p.A564T	0.000	28	0%	18	66.7%	0	-	benign(0)	tolerated(0.6)	neutral(0.004)	superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256363	140256363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.W436R	0.023	82	0%	64	37.5%	0	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140256805	140256805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018903.2	+1	reviewed	p.R583Q	0.000	169	0.6%	132	28%	0	-	benign(0.229)	deleterious(0.01)	neutral(0.429)	superfamily_Cadherin-like
PCDHB18	54660	genome.wustl.edu	37	5	140616222	140616222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000274705	+1	known	p.S646L	0.996	47	0%	34	35.3%	1	0%	-	-	-	NULL
PCDHGB4	8641	genome.wustl.edu	37	5	140767954	140767954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003736.2	+1	reviewed	p.Q168R	0.240	114	0%	118	28.8%	0	-	benign(0.024)	tolerated(0.12)	neutral(0.262)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140769021	140769021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003736.2	+1	reviewed	p.R524C	1.000	11	0%	17	41.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC5	56097	genome.wustl.edu	37	5	140869550	140869550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018929.2	+1	reviewed	p.R248H	0.992	118	0%	99	43.4%	0	-	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	HMMPfam_Cadherin,superfamily_Cadherin-like
PDGFRB	5159	genome.wustl.edu	37	5	149498395	149498395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002609.3	-1	reviewed	p.C940Y	1.000	107	0%	84	31%	66	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ZNF300	91975	genome.wustl.edu	37	5	150275564	150275564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052860.2	-1	reviewed	p.E413K	0.871	65	1.5%	89	40.4%	1	0%	probably_damaging(0.995)	deleterious(0.05)	deleterious(0.803)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FAT2	2196	genome.wustl.edu	37	5	150914107	150914107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001447.2	-1	reviewed	p.A3097V	1.000	52	0%	38	34.2%	3	33.3%	probably_damaging(0.953)	deleterious(0.01)	deleterious(0.802)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
CYFIP2	26999	genome.wustl.edu	37	5	156810281	156810281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037332.2	+1	validated	p.R1041C	1.000	48	0%	33	27.3%	15	26.6%	probably_damaging(0.988)	deleterious(0.03)	deleterious(0.802)	HMMPfam_FragX_IP
NIPAL4	348938	genome.wustl.edu	37	5	156894071	156894071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099287.1	+1	reviewed	p.G160S	1.000	584	0%	500	32.8%	0	-	benign(0.308)	tolerated(0.55)	neutral(0.103)	HMMPfam_DUF803
ADAM19	8728	genome.wustl.edu	37	5	156936442	156936442	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033274.2	-1	reviewed	p.V258M	0.998	97	0%	88	36.4%	1	0%	possibly_damaging(0.902)	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
SOX30	11063	genome.wustl.edu	37	5	157078636	157078636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178424.1	-1	reviewed	p.G151W	0.014	6	0.000	9	0.556	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ATP10B	23120	genome.wustl.edu	37	5	160047756	160047756	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025153.2	-1	validated	p.G672C	0.006	39	0%	28	25%	3	33.3%	possibly_damaging(0.952)	tolerated(0.06)	deleterious(0.718)	superfamily_HAD-like
CPEB4	80315	genome.wustl.edu	37	5	173372136	173372136	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030627.2	+1	validated	p.I483	0.862	141	0%	121	27.3%	4	25%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
THOC3	84321	genome.wustl.edu	37	5	175387053	175387053	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032361.2	-1	validated	p.A325	1.000	87	0%	87	16.1%	93	22.5%	-	-	-	HMMSmart_WD40,superfamily_WD40_like
PDLIM7	9260	genome.wustl.edu	37	5	176917869	176917869	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005451.3	-1	reviewed	e6+2	1.000	54	0%	60	36.7%	12	91.6%	-	-	-	-
TBC1D9B	23061	genome.wustl.edu	37	5	179294547	179294547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000444477	-1	known	p.L208I	0.027	130	0%	98	32.7%	1	100%	-	-	-	NULL
EEF1E1	9521	genome.wustl.edu	37	6	8097660	8097660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004280.4	-1	reviewed	p.G43E	1.000	212	0%	225	23.6%	22	31.8%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	NULL
ENSG00000207394	0	genome.wustl.edu	37	6	23125229	23125229	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000384664	-1	novel	NULL	0.062	67	1.5%	46	26.1%	0	-	-	-	-	-
FAM65B	9750	genome.wustl.edu	37	6	24847838	24847838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014722.2	-1	validated	p.H387Y	1.000	41	0%	45	48.9%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25538189	25538189	+	Missense_Mutation	SNP	G	G	A	rs74654931		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017640.5	+1	validated	p.R725H	1.000	130	0%	135	34.1%	15	46.6%	benign(0.003)	tolerated(0.15)	neutral(0.241)	NULL
HIST1H2AK	8330	genome.wustl.edu	37	6	27805887	27805887	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003510.2	-1	reviewed	p.T77	0.626	154	0.6%	123	35.8%	2	50%	-	-	-	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold
ZNF192	7745	genome.wustl.edu	37	6	28116403	28116403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006298.2	+1	validated	p.R73Q	0.959	83	0%	66	40.9%	0	-	possibly_damaging(0.928)	tolerated(0.1)	deleterious(0.662)	HMMPfam_SCAN,HMMSmart_SM00431
ZNF187	7741	genome.wustl.edu	37	6	28239714	28239714	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152736.4	+1	validated	e1+2	0.000	89	0%	70	27.1%	2	50%	-	-	-	-
ATF6B	1388	genome.wustl.edu	37	6	32085784	32085785	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004381.4	-1	reviewed	p.P426fs	0.422:0.419	-	-	-	-	-	-	-	-	-	NULL
HLA-DOB	3112	genome.wustl.edu	37	6	32783047	32783047	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000447394	-1	known	p.R32W	0.983	107	0%	112	26.8%	4	50%	-	-	-	HMMPfam_MHC_II_beta,superfamily_MHC antigen-recognition domain
APOBEC2	10930	genome.wustl.edu	37	6	41029282	41029282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006789.3	+1	validated	p.R116Q	0.004	67	0%	50	30%	0	-	benign(0.023)	tolerated(0.58)	neutral(0.006)	HMMPfam_APOBEC_N,superfamily_Cytidine deaminase-like
UBR2	23304	genome.wustl.edu	37	6	42646299	42646299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015255.2	+1	reviewed	p.G1501S	1.000	309	0%	330	21.5%	14	35.7%	benign(0.004)	tolerated(0.11)	neutral(0.272)	NULL
TDRD6	221400	genome.wustl.edu	37	6	46661297	46661297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001010870.2	+1	validated	p.Y1811C	0.000	63	0%	58	34.5%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
IL17F	112744	genome.wustl.edu	37	6	52101947	52101947	+	Missense_Mutation	SNP	G	G	A	rs142962486	by1000genomes	TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052872.3	-1	reviewed	p.R92W	0.997	115	0%	68	33.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IL17,superfamily_Cystine-knot cytokines
BAI3	577	genome.wustl.edu	37	6	70048880	70048880	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001704.2	+1	reviewed	p.L1087	1.000	121	0%	101	21.8%	0	-	-	-	-	HMMPfam_7tm_2
COL19A1	1310	genome.wustl.edu	37	6	70859631	70859631	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001858.4	+1	reviewed	p.Q643H	1.000	254	0%	309	32.7%	0	-	probably_damaging(0.965)	tolerated(0.1)	deleterious(0.694)	HMMPfam_Collagen
COL9A1	1297	genome.wustl.edu	37	6	70990530	70990530	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001851.4	-1	reviewed	p.G320	0.803	18	0%	14	50%	0	-	-	-	-	HMMPfam_Collagen
SIM1	6492	genome.wustl.edu	37	6	100896393	100896393	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005068.2	-1	reviewed	p.R235	0.977	34	0%	26	38.5%	0	-	-	-	-	HMMSmart_PAS,superfamily_SSF55785
AKD1	221264	genome.wustl.edu	37	6	109854641	109854641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000424296	-1	known	p.R207Q	0.525	149	0%	152	30.9%	0	-	probably_damaging(0.992)	tolerated(0.55)	neutral(0.455)	HMMPfam_ADK,superfamily_SSF52540
LAMA4	3910	genome.wustl.edu	37	6	112466051	112466051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105206.1	-1	reviewed	p.A813V	1.000	57	0%	81	39.5%	18	0%	benign(0.273)	tolerated(0.19)	neutral(0.079)	HMMPfam_Laminin_II
FRK	2444	genome.wustl.edu	37	6	116277731	116277731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002031.2	-1	reviewed	p.M281T	1.000	284	0%	251	23.1%	5	40%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
TSPYL4	23270	genome.wustl.edu	37	6	116574136	116574136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021648.4	-1	validated	p.R346W	1.000	215	0%	162	30.9%	9	11.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_NAP
CEP85L	387119	genome.wustl.edu	37	6	118791792	118791792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042475.2	-1	validated	p.L644F	0.997	183	0%	191	36.1%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
TAAR9	134860	genome.wustl.edu	37	6	132859716	132859716	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175057.3	+1	reviewed	p.S96	0.992	375	0%	368	34.2%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AKAP12	9590	genome.wustl.edu	37	6	151672944	151672945	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005100.3	+1	reviewed	p.A1141fs	0.001:0.000	-	-	-	-	-	-	-	-	-	NULL
RMND1	55005	genome.wustl.edu	37	6	151726967	151726967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017909.2	-1	validated	p.M402T	1.000	191	0%	213	32.4%	23	47.8%	benign(0.277)	deleterious(0)	deleterious(0.474)	HMMPfam_DUF155
TIAM2	26230	genome.wustl.edu	37	6	155485665	155485665	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012454.3	+1	reviewed	p.A715	0.011	41	0%	25	32%	0	-	-	-	-	NULL
EZR	7430	genome.wustl.edu	37	6	159206394	159206394	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001111077.1	-1	reviewed	p.N138	1.000	117	0%	82	39%	125	50.4%	-	-	-	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
HOXA2	3199	genome.wustl.edu	37	7	27141877	27141877	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006735.3	-1	reviewed	p.R81	1.000	14	0%	17	29.4%	0	-	-	-	-	NULL
CPVL	54504	genome.wustl.edu	37	7	29111981	29111981	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019029.2	-1	reviewed	p.V223A	0.003	169	0%	206	33%	7	0%	benign(0.001)	tolerated(0.99)	-	HMMPfam_Peptidase_S10,superfamily_alpha/beta-Hydrolases
GLI3	2737	genome.wustl.edu	37	7	42004378	42004378	+	Silent	SNP	C	C	T	rs28396689	byCluster	TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.P1431	0.999	34	0%	31	51.6%	2	0%	-	-	-	NULL
AEBP1	165	genome.wustl.edu	37	7	44151497	44151497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001129.3	+1	reviewed	p.V629L	1.000	64	0%	48	14.6%	241	0.4%	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases
OGDH	4967	genome.wustl.edu	37	7	44715707	44715707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002541.3	+1	reviewed	p.K389E	1.000	100	0%	95	23.2%	81	20.9%	possibly_damaging(0.94)	deleterious(0)	deleterious(0.830)	HMMPfam_E1_dh,superfamily_SSF52518
FIGNL1	63979	genome.wustl.edu	37	7	50513031	50513031	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042762.1	-1	validated	p.R652Q	1.000	132	0.8%	123	25.2%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Vps4_C,superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF92	168374	genome.wustl.edu	37	7	64864590	64864590	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152626.2	+1	validated	p.S521	0.002	75	0%	95	38.9%	2	50%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
KCTD7	154881	genome.wustl.edu	37	7	66104124	66104124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153033.3	+1	validated	p.V259M	0.998	63	0%	53	45.3%	2	0%	possibly_damaging(0.81)	deleterious(0.01)	deleterious(0.711)	NULL
CALN1	83698	genome.wustl.edu	37	7	71252873	71252873	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031468.3	-1	validated	p.Q225K	1.000	187	0%	127	37.8%	6	50%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
MDH2	4191	genome.wustl.edu	37	7	75684208	75684210	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005918.2	+1	reviewed	p.L44in_frame_del	1.000:0.999:0.500	-	-	-	-	-	-	-	-	-	HMMPfam_Ldh_1_N,superfamily_NAD(P)-bd
NPTX2	4885	genome.wustl.edu	37	7	98249165	98249165	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002523.2	+1	reviewed	p.E213*	1.000	33	0%	23	34.8%	1	0%	-	-	-	NULL
GNB2	2783	genome.wustl.edu	37	7	100274422	100274423	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005273.3	+1	reviewed	p.L69fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
SERPINE1	5054	genome.wustl.edu	37	7	100773916	100773916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000602.3	+1	reviewed	p.W162C	1.000	41	2.4%	41	22%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
PPP1R3A	5506	genome.wustl.edu	37	7	113519436	113519436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002711.3	-1	reviewed	p.A571T	0.000	127	0%	135	25.9%	0	-	benign(0)	tolerated(1)	-	NULL
SND1	27044	genome.wustl.edu	37	7	127344904	127344910	+	Frame_Shift_Del	DEL	CACAGAG	CACAGAG	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CACAGAG	CACAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014390.2	+1	validated	p.T285fs	1.000:1.000:1.000:0.986:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SNase,HMMSmart_SNc,superfamily_Staphylococal_nuclease_OB-fold
FLNC	2318	genome.wustl.edu	37	7	128482673	128482673	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001458.4	+1	reviewed	p.Y770	0.984	29	0%	23	26.1%	8	0%	-	-	-	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
KIAA1549	57670	genome.wustl.edu	37	7	138552738	138552738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020910.2	-1	validated	p.A1588T	1.000	77	1.3%	54	27.8%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MGAM	8972	genome.wustl.edu	37	7	141759683	141759683	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004668.2	+1	reviewed	p.Q1326*	0.016	152	0%	134	26.1%	0	-	-	-	-	HMMPfam_Glyco_hydro_31
FAM131B	9715	genome.wustl.edu	37	7	143054503	143054503	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031690.2	-1	validated	p.Q160	1.000	70	0%	78	25.6%	0	-	-	-	-	NULL
OR2F2	135948	genome.wustl.edu	37	7	143632554	143632554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004685.1	+1	provisional	p.V77I	0.119	402	0%	301	28.6%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PAXIP1	22976	genome.wustl.edu	37	7	154752646	154752646	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007349.3	-1	reviewed	p.Q797H	0.945	209	0%	187	17.1%	4	0%	possibly_damaging(0.952)	tolerated(0.11)	deleterious(0.667)	NULL
PAXIP1	22976	genome.wustl.edu	37	7	154767473	154767473	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007349.3	-1	reviewed	p.R336Q	1.000	84	1.2%	98	30.6%	5	20%	unknown(0)	tolerated(0.33)	-	NULL
RNF32	140545	genome.wustl.edu	37	7	156469254	156469254	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030936.2	+1	reviewed	p.L332	0.452	74	0%	58	46.6%	2	100%	-	-	-	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
MYOM2	9172	genome.wustl.edu	37	8	2037977	2037977	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003970.2	+1	validated	p.S597	0.763	97	0%	77	18.2%	1	0%	-	-	-	HMMPfam_fn3,superfamily_FN_III-like
CSGALNACT1	55790	genome.wustl.edu	37	8	19362942	19362942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130518.1	-1	validated	p.A135V	0.018	36	0%	45	40%	2	0%	benign(0.036)	tolerated(1)	neutral(0.002)	HMMPfam_CHGN
KIAA1967	57805	genome.wustl.edu	37	8	22463290	22463290	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021174.4	+1	validated	p.S2P	1.000	97	0%	99	35.4%	33	36.3%	benign(0.041)	deleterious(0)	neutral(0.447)	NULL
RHOBTB2	23221	genome.wustl.edu	37	8	22864657	22864657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015178.2	+1	validated	p.L300P	1.000	58	0%	58	24.1%	3	33.3%	benign(0.002)	tolerated(0.12)	neutral(0.261)	HMMSmart_BTB,superfamily_BTB/POZ_fold
TEX15	56154	genome.wustl.edu	37	8	30704677	30704677	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031271.3	-1	validated	p.H619	0.047	95	0%	101	27.7%	0	-	-	-	-	NULL
PURG	29942	genome.wustl.edu	37	8	30889929	30889929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013357.2	-1	reviewed	p.E124K	1.000	42	0%	43	34.9%	1	0%	possibly_damaging(0.907)	tolerated(0.07)	deleterious(0.679)	HMMPfam_PurA,HMMSmart_SM00712
GOT1L1	137362	genome.wustl.edu	37	8	37795155	37795155	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152413.2	-1	validated	e3+1	0.999	83	0%	86	34.9%	0	-	-	-	-	-
HOOK3	84376	genome.wustl.edu	37	8	42821745	42821745	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032410.3	+1	validated	p.I303	1.000	152	0%	158	34.8%	2	0%	-	-	-	HMMPfam_HOOK
RAB2A	5862	genome.wustl.edu	37	8	61504509	61504509	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002865.1	+1	provisional	p.T152S	1.000	103	0%	101	40.6%	79	41.7%	benign(0.009)	tolerated(0.09)	neutral(0.297)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
VCPIP1	80124	genome.wustl.edu	37	8	67578218	67578218	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025054.4	-1	validated	p.L326F	1.000	63	0%	58	41.4%	2	50%	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	HMMPfam_OTU
RBM12B	389677	genome.wustl.edu	37	8	94747621	94747621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203390.2	-1	validated	p.A340T	0.991	115	0%	103	29.1%	2	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
MTDH	92140	genome.wustl.edu	37	8	98656790	98656790	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178812.3	+1	validated	p.A19V	1.000	7	0.000	4	1.000	28	35.7%	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	NULL
VPS13B	157680	genome.wustl.edu	37	8	100874126	100874126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017890.3	+1	reviewed	p.G3748S	1.000	22	0%	14	28.6%	3	0%	benign(0.001)	tolerated(0.46)	neutral(0.012)	NULL
UBR5	51366	genome.wustl.edu	37	8	103354727	103354729	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015902.4	-1	reviewed	p.G357in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RIMS2	9699	genome.wustl.edu	37	8	104897732	104897732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001100117.1	+1	validated	p.R302K	1.000	191	0%	160	36.9%	0	-	benign(0.407)	tolerated(0.41)	neutral(0.147)	NULL
KCNV1	27012	genome.wustl.edu	37	8	110980663	110980663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014379.2	-1	reviewed	p.A386V	1.000	108	0%	87	33.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ENPP2	5168	genome.wustl.edu	37	8	120583054	120583054	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006209.3	-1	reviewed	p.A655V	1.000	59	0%	61	27.9%	36	0%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	superfamily_His-Me finger endonucleases
MTBP	27085	genome.wustl.edu	37	8	121509638	121509638	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022045.3	+1	provisional	p.R485*	0.979	113	0%	122	31.1%	0	-	-	-	-	NULL
SLC45A4	57210	genome.wustl.edu	37	8	142221643	142221643	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080431.1	-1	provisional	p.S765	0.000	28	0%	44	20.5%	21	9.5%	-	-	-	NULL
TSNARE1	203062	genome.wustl.edu	37	8	143395795	143395795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145003.3	-1	validated	p.A361T	1.000	122	0%	92	34.8%	2	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	superfamily_t-snare
PLEC	5339	genome.wustl.edu	37	8	144991617	144991617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_201380.2	-1	reviewed	p.K4261N	1.000	38	0%	33	27.3%	129	27.1%	probably_damaging(0.999)	-	-	NULL
LRRC14	9684	genome.wustl.edu	37	8	145745272	145745272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014665.1	+1	provisional	p.P55S	1.000	52	0%	38	36.8%	11	18.1%	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
ZNF250	58500	genome.wustl.edu	37	8	146107077	146107077	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021061.3	-1	validated	p.T502	0.006	142	0%	102	28.4%	9	22.2%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
KDM4C	23081	genome.wustl.edu	37	9	6986591	6986591	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015061.3	+1	reviewed	p.S534R	0.712	182	0%	166	35.5%	9	22.2%	possibly_damaging(0.805)	tolerated(0.49)	neutral(0.314)	NULL
PTPRD	5789	genome.wustl.edu	37	9	8521469	8521469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002839.3	-1	reviewed	p.C257R	1.000	101	1%	117	34.2%	0	-	possibly_damaging(0.579)	deleterious(0)	deleterious(0.643)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
MLLT3	4300	genome.wustl.edu	37	9	20413785	20413785	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004529.2	-1	validated	p.P353	0.012	225	0%	233	40.3%	8	25%	-	-	-	NULL
KLHL9	55958	genome.wustl.edu	37	9	21333755	21333755	+	Silent	SNP	T	T	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018847.2	-1	validated	p.T368	0.999	141	0%	145	29.7%	10	40%	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
MTAP	4507	genome.wustl.edu	37	9	21854797	21854797	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002451.3	+1	reviewed	p.K206N	0.998	110	0%	76	26.3%	17	35.2%	benign(0.254)	tolerated(0.28)	neutral(0.057)	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
TAF1L	138474	genome.wustl.edu	37	9	32632209	32632209	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153809.2	-1	provisional	p.I1123	0.999	406	0%	376	23.1%	2	0%	-	-	-	NULL
BAG1	573	genome.wustl.edu	37	9	33255224	33255224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004323.5	-1	reviewed	p.A344V	0.886	67	0%	78	35.9%	116	41.3%	possibly_damaging(0.672)	tolerated(0.06)	deleterious(0.560)	superfamily_BAG domain
KIF24	347240	genome.wustl.edu	37	9	34256486	34256486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_194313.2	-1	validated	p.T1040M	0.000	104	0%	91	33%	2	0%	probably_damaging(0.97)	tolerated(0.4)	neutral(0.428)	NULL
RUSC2	9853	genome.wustl.edu	37	9	35546783	35546783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135999.1	+1	validated	p.R89W	0.994	45	0%	58	29.3%	6	16.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SIT1	27240	genome.wustl.edu	37	9	35650211	35650211	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014450.2	-1	validated	p.Q109	0.109	131	0%	136	35.3%	2	0%	-	-	-	NULL
C9orf100	84904	genome.wustl.edu	37	9	35663363	35663363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032818.2	-1	provisional	p.A167V	1.000	171	0%	162	32.1%	7	42.8%	benign(0.377)	tolerated(1)	neutral(0.120)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
TMEM8B	51754	genome.wustl.edu	37	9	35853718	35853718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042589.1	+1	provisional	p.G434W	0.349	79	0%	42	21.4%	10	20%	benign(0.236)	deleterious(0.02)	neutral(0.407)	NULL
PRKACG	5568	genome.wustl.edu	37	9	71628426	71628426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002732.3	-1	reviewed	p.R195C	0.940	47	0%	41	12.2%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TJP2	9414	genome.wustl.edu	37	9	71854872	71854872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004817.3	+1	reviewed	p.D792G	1.000	175	0%	165	26.7%	29	31%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM2	23670	genome.wustl.edu	37	9	74365225	74365225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013390.2	-1	validated	p.R22H	0.995	133	0%	93	35.5%	11	36.3%	benign(0)	tolerated(0.15)	neutral(0.241)	NULL
GNAQ	2776	genome.wustl.edu	37	9	80409421	80409421	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002072.2	-1	provisional	p.A231	0.987	258	0%	240	30.8%	14	35.7%	-	-	-	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
CEP78	84131	genome.wustl.edu	37	9	80877899	80877899	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098802.1	+1	validated	p.E487G	1.000	157	0%	200	36.5%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PSAT1	29968	genome.wustl.edu	37	9	80923441	80923441	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_058179.2	+1	reviewed	p.L228	0.998	223	0.4%	189	37%	170	51.7%	-	-	-	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
DAPK1	1612	genome.wustl.edu	37	9	90255343	90255343	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004938.2	+1	reviewed	p.R254	1.000	128	0%	128	21.9%	4	25%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DAPK1	1612	genome.wustl.edu	37	9	90263717	90263717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004938.2	+1	reviewed	p.V451M	1.000	79	0%	71	22.5%	8	37.5%	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
DAPK1	1612	genome.wustl.edu	37	9	90301581	90301581	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004938.2	+1	reviewed	p.P780	0.002	94	0%	80	50%	9	22.2%	-	-	-	superfamily_SSF52540
C9orf79	286234	genome.wustl.edu	37	9	90502501	90502501	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178828.4	+1	validated	p.L1033	0.000	52	0%	39	25.6%	0	-	-	-	-	NULL
ABCA1	19	genome.wustl.edu	37	9	107566914	107566914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005502.2	-1	reviewed	p.A1518T	1.000	281	0.4%	273	36.3%	8	12.5%	benign(0.025)	tolerated(0.26)	neutral(0.035)	NULL
ZNF462	58499	genome.wustl.edu	37	9	109687834	109687834	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021224.4	+1	validated	p.P547	0.196	164	0%	111	29.7%	0	-	-	-	-	superfamily_beta-sandwich domain of Sec23/24
TNC	3371	genome.wustl.edu	37	9	117797524	117797524	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002160.2	-1	validated	p.G1916S	1.000	59	0%	56	25%	110	30%	probably_damaging(0.981)	tolerated(0.65)	neutral(0.428)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
MORN5	254956	genome.wustl.edu	37	9	124936830	124936830	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198469.2	+1	validated	p.Y121	0.977	223	0%	202	30.2%	0	-	-	-	-	superfamily_SSF82185
PBX3	5090	genome.wustl.edu	37	9	128691973	128691973	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006195.5	+1	validated	p.R186*	1.000	227	0.4%	215	38.6%	0	-	-	-	-	HMMPfam_PBC
SPTAN1	6709	genome.wustl.edu	37	9	131353784	131353784	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130438.1	+1	validated	p.R1012H	1.000	227	0%	209	36.4%	44	29.5%	possibly_damaging(0.908)	tolerated(0.24)	neutral(0.399)	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,HMMSmart_SPEC,superfamily_Spectrin
ZER1	10444	genome.wustl.edu	37	9	131517725	131517725	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006336.2	-1	provisional	p.I40	1.000	76	0%	61	26.2%	15	26.6%	-	-	-	NULL
LAMC3	10319	genome.wustl.edu	37	9	133954657	133954657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006059.3	+1	reviewed	p.T1300M	0.000	30	0%	25	52%	43	0%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
GFI1B	8328	genome.wustl.edu	37	9	135866405	135866405	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004188.4	+1	validated	p.R321W	0.993	40	0%	40	40%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100289412	100289412	genome.wustl.edu	37	9	135983881	135983881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344240.1	+1	model	p.L131I	0.000	22	0%	18	38.9%	0	-	-	-	-	NULL
ADAMTS13	11093	genome.wustl.edu	37	9	136321304	136321304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139025.3	+1	reviewed	p.R1228C	0.604	34	0%	34	32.4%	2	50%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	superfamily_Spermadhesin CUB domain
DPP7	29952	genome.wustl.edu	37	9	140006600	140006600	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013379.2	-1	reviewed	p.C338	0.614	46	0%	27	33.3%	267	36.3%	-	-	-	HMMPfam_Peptidase_S28
FRMD4A	55691	genome.wustl.edu	37	10	13716919	13716919	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018027.3	-1	validated	p.R415*	1.000	157	0%	168	35.7%	3	33.3%	-	-	-	NULL
FRMD4A	55691	genome.wustl.edu	37	10	13743422	13743422	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018027.3	-1	validated	p.Y298C	1.000	128	0%	105	27.6%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_FERM_C,superfamily_SSF50729
MTPAP	55149	genome.wustl.edu	37	10	30615443	30615443	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018109.3	-1	validated	p.G301D	0.998	86	0%	68	35.3%	5	0%	possibly_damaging(0.917)	tolerated(0.59)	neutral(0.372)	superfamily_Nucleotidyltransferase
PARD3	56288	genome.wustl.edu	37	10	34671849	34671849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019619.3	-1	validated	p.A340T	1.000	116	0%	117	39.3%	8	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00228,superfamily_PDZ domain-like
ANKRD30A	91074	genome.wustl.edu	37	10	37419131	37419131	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052997.2	+1	validated	e3-2	0.994	99	0%	95	42.1%	0	-	-	-	-	-
LOC646360	646360	genome.wustl.edu	37	10	37626958	37626958	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XR_078419.1	+1	model	NULL	0.384	99	0%	116	44.8%	0	-	-	-	-	-
ZNF33A	7581	genome.wustl.edu	37	10	38344672	38344672	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006954.1	+1	validated	p.L540	0.007	183	0%	198	35.9%	11	27.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CCNYL2	414194	genome.wustl.edu	37	10	42916266	42916266	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000431603	-1	known	p.W178*	1.000	29	0%	35	20%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00385,HMMPfam_Cyclin_N,superfamily_Cyclin-like
ZNF239	8187	genome.wustl.edu	37	10	44053305	44053305	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099282.1	-1	validated	p.Q75*	0.000	268	0%	253	30.8%	3	33.3%	-	-	-	NULL
PCDH15	65217	genome.wustl.edu	37	10	55568773	55568773	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142769.1	-1	reviewed	p.E1684D	0.008	243	0%	205	11.7%	0	-	unknown(0)	tolerated(0.14)	-	NULL
SGPL1	8879	genome.wustl.edu	37	10	72636965	72636965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003901.3	+1	validated	p.G527D	1.000	132	0%	146	35.6%	64	39%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTEN	5728	genome.wustl.edu	37	10	89690811	89690811	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R74fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
TNKS2	80351	genome.wustl.edu	37	10	93608178	93608178	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025235.3	+1	validated	p.P799	0.707	66	0%	49	53.1%	7	85.7%	-	-	-	NULL
BTAF1	9044	genome.wustl.edu	37	10	93718894	93718894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003972.2	+1	validated	p.D325N	1.000	278	0%	181	51.9%	1	0%	benign(0.003)	tolerated(0.39)	neutral(0.016)	superfamily_ARM repeat
CPEB3	22849	genome.wustl.edu	37	10	93999139	93999140	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014912.4	-1	validated	p.R324fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
MMS19	64210	genome.wustl.edu	37	10	99226300	99226300	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022362.4	-1	validated	p.L489R	0.994	127	0%	144	27.1%	21	28.5%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	superfamily_ARM repeat
SEC31B	25956	genome.wustl.edu	37	10	102249984	102249984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015490.3	-1	reviewed	p.P916S	0.001	106	0%	88	31.8%	1	100%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
NFKB2	4791	genome.wustl.edu	37	10	104160052	104160052	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077494.1	+1	validated	p.A534	0.010	25	0%	28	25%	72	25%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
CUEDC2	79004	genome.wustl.edu	37	10	104183288	104183288	+	Silent	SNP	C	C	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024040.2	-1	validated	p.V253	0.998	161	0%	172	36%	185	42.1%	-	-	-	NULL
VWA2	340706	genome.wustl.edu	37	10	116046111	116046111	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198496.1	+1	provisional	p.R471*	0.187	33	0%	23	26.1%	6	0%	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300
FAM45A	404636	genome.wustl.edu	37	10	120871420	120871420	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207009.2	+1	validated	p.A104	1.000	343	0%	374	31.8%	7	28.5%	unknown(0)	-	-	NULL
GRK5	2869	genome.wustl.edu	37	10	121214717	121214717	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000457057	+1	known	p.R354*	0.000	23	0%	23	26.1%	4	25%	-	-	-	NULL
PKP3	11187	genome.wustl.edu	37	11	399132	399132	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007183.2	+1	reviewed	p.N403	0.992	96	0%	68	19.1%	101	39.6%	-	-	-	HMMPfam_Arm,HMMSmart_ARM,superfamily_ARM-type_fold
CHID1	66005	genome.wustl.edu	37	11	883187	883187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142676.1	-1	validated	p.A332V	0.014	43	0%	31	16.1%	307	1.6%	benign(0)	tolerated(0.58)	neutral(0.005)	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
AP2A2	161	genome.wustl.edu	37	11	1009702	1009702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012305.2	+1	validated	p.A876V	1.000	98	0%	95	32.6%	129	41%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	HMMPfam_Alpha_adaptin_C,superfamily_Subdomain of clathrin and coatomer appendage domain
MUC2	4583	genome.wustl.edu	37	11	1097728	1097728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002457.2	+1	reviewed	p.P2270H	0.974	88	0%	82	28%	0	-	unknown(0)	-	-	HMMPfam_VWD,HMMSmart_SM00216
MUC5B	727897	genome.wustl.edu	37	11	1264580	1264580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.P2160H	0.002	314	0%	232	57.8%	9	66.6%	probably_damaging(1)	-	-	NULL
MUC5B	727897	genome.wustl.edu	37	11	1270286	1270286	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002458.1	+1	validated	p.Q4063fs	0.013	-	-	-	-	-	-	-	-	-	NULL
CARS	833	genome.wustl.edu	37	11	3023227	3023227	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001014437.1	-1	reviewed	p.T778	0.000	140	0%	124	27.4%	74	52.7%	-	-	-	NULL
CCKBR	887	genome.wustl.edu	37	11	6292299	6292299	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176875.2	+1	reviewed	p.S290	0.027	58	1.7%	61	45.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DNHD1	144132	genome.wustl.edu	37	11	6591500	6591500	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144666.2	+1	provisional	p.L4327V	0.027	39	0%	42	28.6%	0	-	benign(0)	tolerated(1)	-	HMMPfam_Dynein_heavy
SCUBE2	57758	genome.wustl.edu	37	11	9069593	9069593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020974.2	-1	validated	p.S535R	0.999	110	0%	112	36.6%	8	12.5%	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
ZBED5	58486	genome.wustl.edu	37	11	10875819	10875819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143667.1	-1	reviewed	p.V225A	0.927	143	0%	131	37.4%	9	22.2%	benign(0.03)	tolerated(0.6)	neutral(0.006)	NULL
SOX6	55553	genome.wustl.edu	37	11	16036586	16036586	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033326.3	-1	reviewed	p.R545H	1.000	189	0%	158	29.1%	0	-	benign(0.002)	tolerated(0.55)	neutral(0.007)	NULL
KCNC1	3746	genome.wustl.edu	37	11	17801129	17801129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112741.1	+1	reviewed	p.G544E	1.000	34	0%	39	41%	0	-	benign(0.001)	tolerated(0.76)	neutral(0.001)	NULL
WT1-AS	51352	genome.wustl.edu	37	11	32460525	32460525	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000395900	+1	known	p.M33T	0.001	46	0%	30	13.3%	0	-	-	-	-	NULL
CCDC73	493860	genome.wustl.edu	37	11	32781675	32781675	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008391.2	-1	validated	p.E39*	1.000	150	0%	168	33.9%	0	-	-	-	-	NULL
TNKS1BP1	85456	genome.wustl.edu	37	11	57081067	57081067	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033396.2	-1	validated	p.P365	0.000	19	0%	14	35.7%	38	34.2%	-	-	-	NULL
UBXN1	51035	genome.wustl.edu	37	11	62445053	62445053	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015853.3	-1	provisional	p.P196	1.000	61	0%	55	32.7%	231	39.3%	-	-	-	NULL
FERMT3	83706	genome.wustl.edu	37	11	63978768	63978768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178443.2	+1	reviewed	p.R179Q	1.000	6	0.000	7	0.571	12	0%	possibly_damaging(0.877)	tolerated(0.67)	neutral(0.344)	HMMSmart_SM00295
RBM4	5936	genome.wustl.edu	37	11	66411420	66411420	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002896.2	+1	validated	p.Y304	1.000	42	0%	48	27.1%	66	34.8%	-	-	-	NULL
CORO1B	57175	genome.wustl.edu	37	11	67208620	67208620	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001018070.1	-1	validated	p.E244	1.000	19	0%	24	41.7%	230	40.8%	-	-	-	superfamily_WD40 repeat-like
PDE2A	5138	genome.wustl.edu	37	11	72385235	72385235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002599.3	-1	validated	p.G6D	1.000	16	0%	14	28.6%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
MYO7A	4647	genome.wustl.edu	37	11	76873950	76873950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000260.3	+1	reviewed	p.A536T	0.813	430	0%	364	33.2%	1	0%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
PAK1	5058	genome.wustl.edu	37	11	77066713	77066713	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128620.1	-1	reviewed	p.R258*	1.000	374	0%	357	32.5%	24	0%	-	-	-	superfamily_Kinase_like
USP35	57558	genome.wustl.edu	37	11	77911784	77911784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020798.2	+1	provisional	p.L376P	1.000	84	0%	96	26%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SYTL2	54843	genome.wustl.edu	37	11	85438837	85438837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000359152	-1	known	p.V79I	1.000	36	0%	28	39.3%	0	-	possibly_damaging(0.753)	deleterious(0)	deleterious(0.721)	NULL
NAALAD2	10003	genome.wustl.edu	37	11	89906996	89906996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005467.3	+1	reviewed	p.P472L	0.037	242	0%	296	32.1%	1	0%	benign(0.001)	tolerated(0.07)	neutral(0.319)	superfamily_Zn-dependent exopeptidases
FAT3	120114	genome.wustl.edu	37	11	92532369	92532369	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.R2064C	1.000	118	0%	118	34.7%	0	-	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
PGR	5241	genome.wustl.edu	37	11	100996755	100996757	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000926.4	-1	reviewed	p.F591in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
BACE1	23621	genome.wustl.edu	37	11	117160401	117160401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012104.3	-1	reviewed	p.A463T	1.000	118	0%	71	40.8%	20	5%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	NULL
RNF26	79102	genome.wustl.edu	37	11	119206365	119206365	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032015.3	+1	reviewed	p.W178*	1.000	134	0%	106	39.6%	27	37%	-	-	-	NULL
MFRP	83552	genome.wustl.edu	37	11	119213384	119213384	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031433.2	-1	reviewed	p.Q437*	0.991	93	0%	74	33.8%	0	-	-	-	-	HMMSmart_SM00192,superfamily_LDL receptor-like module
ZNF202	7753	genome.wustl.edu	37	11	123600364	123600364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003455.2	-1	validated	p.R191H	0.924	141	0%	85	34.1%	1	0%	benign(0.164)	tolerated(0.17)	neutral(0.074)	NULL
CDON	50937	genome.wustl.edu	37	11	125867275	125867275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016952.4	-1	validated	p.S730F	1.000	110	0%	109	32.1%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TIRAP	114609	genome.wustl.edu	37	11	126160803	126160806	+	Frame_Shift_Del	DEL	CCTC	CCTC	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CCTC	CCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_148910.2	+1	reviewed	p.L7fs	0.972:0.992:0.993:0.988	-	-	-	-	-	-	-	-	-	NULL
NRIP2	83714	genome.wustl.edu	37	12	2936379	2936379	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031474.2	-1	validated	p.G280	1.000	70	0%	41	29.3%	1	0%	-	-	-	NULL
PHC1	1911	genome.wustl.edu	37	12	9085436	9085436	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004426.2	+1	reviewed	p.P461	0.014	529	0%	434	21.9%	4	25%	-	-	-	NULL
STYK1	55359	genome.wustl.edu	37	12	10783732	10783732	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018423.2	-1	validated	p.C121	0.003	117	0%	81	33.3%	2	50%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MIR613	693198	genome.wustl.edu	37	12	12917633	12917633	+	RNA	SNP	A	A	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385248	+1	known	NULL	0.001	417	0%	395	28.4%	0	-	-	-	-	-
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	byCluster	TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.G12V	1.000	245	0%	224	30.4%	6	33.3%	benign(0.048)	deleterious(0)	neutral(0.448)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITPR2	3709	genome.wustl.edu	37	12	26628252	26628252	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002223.2	-1	validated	p.N2107D	1.000	207	0%	217	20.3%	8	12.5%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
IRAK4	51135	genome.wustl.edu	37	12	44167810	44167810	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114182.2	+1	reviewed	p.Q232*	1.000	267	0%	268	37.3%	3	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
COL2A1	1280	genome.wustl.edu	37	12	48368057	48368057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001844.4	-1	reviewed	p.L1378I	1.000	162	0%	109	12.8%	5	0%	unknown(0)	deleterious(0.04)	-	HMMPfam_COLFI,HMMSmart_SM00038
MLL2	8085	genome.wustl.edu	37	12	49416411	49416411	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.E5434K	1.000	140	0%	105	32.4%	18	44.4%	unknown(0)	-	-	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
FMNL3	91010	genome.wustl.edu	37	12	50045816	50045816	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175736.4	-1	validated	p.S501	0.002	37	0%	26	42.3%	4	0%	-	-	-	NULL
LOC100288977	100288977	genome.wustl.edu	37	12	54689073	54689073	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343168.1	+1	model	p.R230fs	0.215	-	-	-	-	-	-	-	-	-	NULL
ZNF385A	25946	genome.wustl.edu	37	12	54764494	54764494	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130967.1	-1	validated	p.S282	1.000	49	0%	23	34.8%	18	5.5%	-	-	-	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ITGA5	3678	genome.wustl.edu	37	12	54802018	54802018	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002205.2	-1	reviewed	p.G231	1.000	124	0%	123	31.7%	23	8.6%	-	-	-	superfamily_SSF69318
ITGA7	3679	genome.wustl.edu	37	12	56082676	56082676	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144996.1	-1	reviewed	p.A974	0.000	50	0%	42	28.6%	6	16.6%	-	-	-	superfamily_Integrin domains
ERBB3	2065	genome.wustl.edu	37	12	56481844	56481844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001982.2	+1	reviewed	p.R258C	0.985	124	0%	120	32.5%	10	50%	benign(0.164)	deleterious(0.01)	neutral(0.421)	HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain
ERBB3	2065	genome.wustl.edu	37	12	56493709	56493714	+	In_Frame_Del	DEL	CTAGAC	CTAGAC	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CTAGAC	CTAGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001982.2	+1	reviewed	p.DL1012in_frame_del	0.681:0.714:0.666:1.000:1.000:0.991	-	-	-	-	-	-	-	-	-	NULL
LRP1	4035	genome.wustl.edu	37	12	57598212	57598212	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.D3657	0.882	57	0%	61	54.1%	68	0%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module
LRP1	4035	genome.wustl.edu	37	12	57601951	57601951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002332.2	+1	reviewed	p.S3997L	1.000	37	0%	32	15.6%	90	1.1%	possibly_damaging(0.947)	tolerated(0.06)	deleterious(0.713)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
CYP27B1	1594	genome.wustl.edu	37	12	58157437	58157437	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000785.3	-1	reviewed	p.G457A	1.000	71	0%	71	50.7%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450
E2F7	144455	genome.wustl.edu	37	12	77440093	77440093	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203394.2	-1	validated	p.R185H	1.000	81	0%	69	36.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_E2F_TDP,superfamily_""Winged helix"" DNA-binding domain"
PTPRQ	374462	genome.wustl.edu	37	12	80838523	80838523	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000266688	+1	known	p.V19	1.000	392	0%	384	25.8%	0	-	-	-	-	NULL
EPYC	1833	genome.wustl.edu	37	12	91371958	91371958	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004950.4	-1	reviewed	p.E83K	0.996	94	0%	100	26%	0	-	benign(0.15)	tolerated(0.39)	neutral(0.029)	NULL
EEA1	8411	genome.wustl.edu	37	12	93244947	93244947	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003566.3	-1	validated	p.R246	0.958	177	0%	186	37.6%	1	100%	-	-	-	NULL
NTN4	59277	genome.wustl.edu	37	12	96181085	96181085	+	Missense_Mutation	SNP	G	G	A	rs34114770	byCluster;byFrequency;by1000genomes	TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021229.3	-1	validated	p.R73W	0.019	106	0%	81	38.3%	5	40%	probably_damaging(0.958)	tolerated(0.06)	deleterious(0.724)	HMMPfam_Laminin_N,HMMSmart_SM00136
SPIC	121599	genome.wustl.edu	37	12	101873459	101873459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152323.1	+1	provisional	p.W66L	1.000	147	0%	140	20.7%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ALDH1L2	160428	genome.wustl.edu	37	12	105445995	105445995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034173.3	-1	reviewed	p.T470S	1.000	267	0%	251	23.9%	4	25%	benign(0)	deleterious(0.01)	neutral(0.406)	HMMPfam_Aldedh,superfamily_ALDH-like
RFX4	5992	genome.wustl.edu	37	12	107114605	107114605	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_213594.1	+1	reviewed	p.F434	0.993	90	0%	87	36.8%	0	-	-	-	-	NULL
UBE3B	89910	genome.wustl.edu	37	12	109921448	109921448	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_130466.2	+1	reviewed	p.R31Q	0.995	204	0%	155	28.4%	19	5.2%	possibly_damaging(0.718)	tolerated(0.54)	neutral(0.268)	HMMPfam_IQ,HMMSmart_SM00015
ACAD10	80724	genome.wustl.edu	37	12	112191644	112191644	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136538.1	+1	reviewed	p.Q993	0.864	16	0%	15	40%	25	48%	-	-	-	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
NAA25	80018	genome.wustl.edu	37	12	112518862	112518862	+	Splice_Site	SNP	A	A	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024953.3	-1	reviewed	e5+2	1.000	130	0%	177	29.9%	0	-	-	-	-	-
C12orf51	283450	genome.wustl.edu	37	12	112601047	112601047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001109662.2	-1	validated	p.G3885W	1.000	87	1.1%	72	19.4%	8	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
PTPN11	5781	genome.wustl.edu	37	12	112940012	112940012	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002834.3	+1	reviewed	p.G555E	1.000	104	0%	97	37.1%	20	20%	benign(0.344)	tolerated(0.05)	neutral(0.454)	NULL
MED13L	23389	genome.wustl.edu	37	12	116457218	116457218	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015335.3	-1	validated	e7-1	1.000	109	0%	105	33.3%	0	-	-	-	-	-
PXN	5829	genome.wustl.edu	37	12	120650247	120650247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080855.1	-1	validated	p.A549V	1.000	92	0%	63	25.4%	88	37.5%	possibly_damaging(0.893)	deleterious(0.04)	deleterious(0.701)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ACADS	35	genome.wustl.edu	37	12	121177162	121177162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000017.2	+1	reviewed	p.D384N	0.998	8	0.000	6	0.667	48	35.4%	probably_damaging(0.978)	tolerated(0.06)	deleterious(0.743)	PatternScan_ACYL_COA_DH_2,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like
VPS33A	65082	genome.wustl.edu	37	12	122735607	122735607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022916.4	-1	validated	p.A175T	0.997	79	0%	62	29%	11	27.2%	benign(0.001)	tolerated(0.21)	neutral(0.044)	HMMPfam_Sec1,superfamily_Sec1-like
OGFOD2	79676	genome.wustl.edu	37	12	123461501	123461501	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024623.1	+1	provisional	p.R69	0.078	33	0%	36	58.3%	25	48%	-	-	-	NULL
SETD8	387893	genome.wustl.edu	37	12	123875327	123875327	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020382.3	+1	validated	p.R95*	1.000	213	0%	218	25.2%	10	20%	-	-	-	NULL
TCTN2	79867	genome.wustl.edu	37	12	124171500	124171500	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024809.3	+1	validated	p.V228I	0.000	144	0%	143	42.7%	14	35.7%	benign(0.049)	tolerated(0.41)	neutral(0.018)	HMMPfam_DUF1619
DHX37	57647	genome.wustl.edu	37	12	125465143	125465143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032656.2	-1	reviewed	p.P211S	0.000	34	0%	35	25.7%	11	63.6%	unknown(0)	tolerated(0.57)	-	NULL
DHX37	57647	genome.wustl.edu	37	12	125465270	125465272	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032656.2	-1	reviewed	p.E168in_frame_del	0.904:0.904:0.905	-	-	-	-	-	-	-	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132504667	132504667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015409.3	+1	validated	p.R1450W	1.000	37	0%	24	29.2%	3	33.3%	unknown(0)	-	-	NULL
OLFM4	10562	genome.wustl.edu	37	13	53624335	53624335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006418.3	+1	reviewed	p.L321S	0.000	126	0%	113	38.1%	2	100%	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_OLF,HMMSmart_OLF
OLFM4	10562	genome.wustl.edu	37	13	53624366	53624366	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006418.3	+1	reviewed	p.T331	0.000	107	0%	121	30.6%	0	-	-	-	-	HMMPfam_OLF,HMMSmart_OLF
LOC643677	643677	genome.wustl.edu	37	13	103398609	103398609	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002344085.1	-1	model	p.Q1409*	0.164	65	0%	78	37.2%	0	-	-	-	-	NULL
PROZ	8858	genome.wustl.edu	37	13	113819434	113819434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003891.1	+1	provisional	p.Q191H	1.000	71	0%	67	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
ATP4B	496	genome.wustl.edu	37	13	114306017	114306017	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000705.3	-1	reviewed	p.G194D	0.001	32	0%	29	44.8%	0	-	benign(0.086)	tolerated(0.19)	neutral(0.056)	HMMPfam_Na_K-ATPase
GRK1	6011	genome.wustl.edu	37	13	114325866	114325866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000335678	+1	known	p.A294T	0.980	35	0%	34	11.8%	0	-	possibly_damaging(0.777)	deleterious(0.03)	deleterious(0.654)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
RNASE2	6036	genome.wustl.edu	37	14	21423989	21423989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002934.2	+1	validated	p.A20V	0.000	90	0%	95	29.5%	1	0%	benign(0.15)	tolerated(0.19)	neutral(0.062)	NULL
MYH7	4625	genome.wustl.edu	37	14	23887568	23887568	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000257.2	-1	reviewed	p.C1340	0.697	29	0%	31	38.7%	0	-	-	-	-	HMMPfam_Myosin_tail_1
IPO4	79711	genome.wustl.edu	37	14	24651008	24651008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024658.3	-1	validated	p.A950V	1.000	59	0%	47	34%	102	46%	benign(0.009)	tolerated(0.21)	neutral(0.044)	superfamily_ARM repeat
HECTD1	25831	genome.wustl.edu	37	14	31641303	31641303	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015382.2	-1	validated	p.D394	1.000	135	0%	171	28.1%	3	66.6%	-	-	-	superfamily_Ankyrin repeat,superfamily_ARM repeat
CFL2	1073	genome.wustl.edu	37	14	35182162	35182162	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021914.7	-1	reviewed	p.V137A	1.000	240	0%	227	26.9%	12	16.6%	benign(0.004)	tolerated(0.55)	neutral(0.007)	HMMPfam_Cofilin_ADF,HMMSmart_SM00102,superfamily_Actin depolymerizing proteins
C14orf37	145407	genome.wustl.edu	37	14	58605636	58605636	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001872.2	-1	predicted	p.I147	0.000	67	0%	61	29.5%	5	40%	-	-	-	NULL
C14orf38	729665	genome.wustl.edu	37	14	60031979	60031979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000281581	-1	known	p.E169G	0.001	342	0%	285	25.3%	0	-	probably_damaging(0.978)	tolerated(0.1)	deleterious(0.707)	NULL
SIX6	4990	genome.wustl.edu	37	14	60976248	60976248	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007374.2	+1	reviewed	p.C44	1.000	38	0%	24	33.3%	0	-	-	-	-	NULL
HIF1A	3091	genome.wustl.edu	37	14	62200980	62200980	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001530.3	+1	validated	p.I335	1.000	165	0%	179	31.8%	57	29.8%	-	-	-	HMMSmart_SM00086,HMMPfam_PAS_3,superfamily_PYP-like sensor domain (PAS domain)
ACTN1	87	genome.wustl.edu	37	14	69343805	69343805	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130004.1	-1	reviewed	p.G860	0.998	100	0%	97	24.7%	366	20.2%	-	-	-	HMMPfam_efhand_Ca_insen,superfamily_SSF47473
PSEN1	5663	genome.wustl.edu	37	14	73673122	73673124	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000021.3	+1	reviewed	p.E300in_frame_del	0.997:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Presenilin,HMMSmart_SM00730
PAPLN	89932	genome.wustl.edu	37	14	73721613	73721613	+	Missense_Mutation	SNP	G	G	A	rs189127558	by1000genomes	TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173462.3	+1	validated	p.R478Q	1.000	18	0%	19	36.8%	10	40%	probably_damaging(0.983)	tolerated(0.19)	deleterious(0.478)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
PNMA1	9240	genome.wustl.edu	37	14	74180095	74180095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006029.4	-1	validated	p.G83D	1.000	148	0%	132	35.6%	26	30.7%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
C14orf43	91748	genome.wustl.edu	37	14	74193327	74193327	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001043318.1	-1	validated	p.E797K	1.000	33	0%	57	31.6%	11	9%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
YLPM1	56252	genome.wustl.edu	37	14	75265530	75265530	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019589.2	+1	validated	p.G1177V	1.000	82	0%	79	21.5%	12	25%	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	NULL
DLST	1743	genome.wustl.edu	37	14	75355994	75355994	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334212	+1	known	p.Q7R	0.992	284	0%	361	44.9%	50	44%	unknown(0)	deleterious(0)	-	NULL
DLST	1743	genome.wustl.edu	37	14	75367835	75367835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001933.4	+1	validated	p.V376I	1.000	345	0%	327	39.1%	69	49.2%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases
KIAA1737	85457	genome.wustl.edu	37	14	77576246	77576246	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033426.2	+1	validated	p.R76	0.592	101	0%	91	27.5%	10	40%	-	-	-	NULL
TDP1	55775	genome.wustl.edu	37	14	90499491	90499491	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000393452	+1	known	p.Q578*	0.000	113	0%	132	39.4%	23	52.1%	-	-	-	HMMPfam_Tyr-DNA_phospho
SERPINA1	5265	genome.wustl.edu	37	14	94845890	94845890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000295.4	-1	reviewed	p.V326I	0.000	116	0%	157	29.3%	249	51%	benign(0.011)	tolerated(0.97)	neutral(0.001)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CDC42BPB	9578	genome.wustl.edu	37	14	103400152	103400152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006035.3	-1	reviewed	p.T1678I	1.000	250	0%	202	31.7%	74	40.5%	probably_damaging(0.998)	tolerated(0.22)	deleterious(0.516)	NULL
KIAA0284	283638	genome.wustl.edu	37	14	105350449	105350449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001112726.1	+1	validated	p.R445C	0.001	7	0.000	14	0.643	19	36.8%	probably_damaging(0.989)	tolerated(0.06)	deleterious(0.762)	NULL
AHNAK2	113146	genome.wustl.edu	37	14	105417146	105417146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138420.2	-1	validated	p.A1548S	0.000	119	0%	88	39.8%	5	40%	benign(0.104)	tolerated(0.3)	neutral(0.037)	NULL
RYR3	6263	genome.wustl.edu	37	15	33855089	33855089	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001036.3	+1	validated	p.G342*	1.000	150	0%	179	21.8%	0	-	-	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
GOLGA8A	23015	genome.wustl.edu	37	15	34678914	34678914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181077.3	-1	reviewed	p.A66V	0.998	710	0%	557	19.4%	5	20%	benign(0.004)	deleterious(0.05)	neutral(0.345)	NULL
FAM98B	283742	genome.wustl.edu	37	15	38776807	38776809	+	In_Frame_Del	DEL	GGT	GGT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	GGT	GGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173611.2	+1	validated	p.G420in_frame_del	0.999:0.976:0.303	-	-	-	-	-	-	-	-	-	NULL
RASGRP1	10125	genome.wustl.edu	37	15	38786724	38786724	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005739.3	-1	reviewed	p.L706	0.529	237	0%	176	36.4%	1	0%	-	-	-	NULL
SPTBN5	51332	genome.wustl.edu	37	15	42167757	42167758	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016642.2	-1	validated	p.G1360fs	0.003:0.001	-	-	-	-	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
TMEM87A	25963	genome.wustl.edu	37	15	42536312	42536312	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015497.3	-1	validated	p.V186	0.997	245	0%	251	25.1%	28	46.4%	-	-	-	HMMPfam_Lung_7-TM_R
PYGO1	26108	genome.wustl.edu	37	15	55838268	55838268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015617.1	-1	provisional	p.R405C	1.000	75	0%	75	36%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LOC100130107	100130107	genome.wustl.edu	37	15	60060923	60060923	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001719310.2	-1	model	p.N108	1.000	116	0%	121	10.7%	709	0%	-	-	-	NULL
SPESP1	246777	genome.wustl.edu	37	15	69238475	69238475	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145658.3	+1	reviewed	p.Q201R	1.000	27	0%	33	30.3%	0	-	possibly_damaging(0.915)	deleterious(0)	deleterious(0.811)	NULL
KIF23	9493	genome.wustl.edu	37	15	69739235	69739235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138555.1	+1	reviewed	p.A941V	1.000	150	0%	156	25.6%	17	23.5%	possibly_damaging(0.914)	deleterious(0.02)	deleterious(0.749)	NULL
ISLR2	57611	genome.wustl.edu	37	15	74427071	74427071	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130136.1	+1	validated	p.P659L	0.004	23	0%	18	27.8%	4	0%	possibly_damaging(0.452)	deleterious(0)	deleterious(0.593)	NULL
SIN3A	25942	genome.wustl.edu	37	15	75703867	75703867	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145357.1	-1	reviewed	p.Y325C	1.000	177	0%	167	27.5%	12	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PAH,superfamily_PAH
SIN3A	25942	genome.wustl.edu	37	15	75706567	75706569	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145357.1	-1	reviewed	p.I150in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_PAH,superfamily_PAH
CHRNB4	1143	genome.wustl.edu	37	15	78921669	78921669	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000750.3	-1	validated	p.T326	0.011	93	0%	75	37.3%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
ADAMTS7	11173	genome.wustl.edu	37	15	79059935	79059935	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014272.3	-1	reviewed	e18-1	1.000	27	0%	24	54.2%	0	-	-	-	-	-
WHAMM	123720	genome.wustl.edu	37	15	83502253	83502253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080435.1	+1	provisional	p.S799G	0.000	51	0%	47	27.7%	17	41.1%	benign(0.026)	tolerated(0.57)	neutral(0.007)	NULL
WDR93	56964	genome.wustl.edu	37	15	90272311	90272311	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020212.1	+1	provisional	p.V370	0.061	345	0%	300	36.7%	0	-	-	-	-	NULL
IQGAP1	8826	genome.wustl.edu	37	15	90999517	90999517	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003870.3	+1	reviewed	p.T582	0.699	179	0%	173	35.3%	29	51.7%	-	-	-	NULL
MAN2A2	4122	genome.wustl.edu	37	15	91455837	91455837	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006122.2	+1	validated	p.T804	0.936	109	0%	108	38%	21	23.8%	-	-	-	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
NPRL3	8131	genome.wustl.edu	37	16	148243	148243	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000399953	-1	known	p.P275H	1.000	62	0%	47	10.6%	44	20.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0171
GNG13	51764	genome.wustl.edu	37	16	849069	849071	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016541.2	-1	validated	p.E3in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NUBP2	10101	genome.wustl.edu	37	16	1836624	1836624	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012225.2	+1	validated	p.L35	1.000	39	0%	31	32.3%	84	48.8%	-	-	-	superfamily_SSF52540
TSC2	7249	genome.wustl.edu	37	16	2134515	2134515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000548.3	+1	reviewed	p.S1431L	0.015	21	0%	18	33.3%	71	45%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
TFAP4	7023	genome.wustl.edu	37	16	4310142	4310142	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003223.2	-1	validated	p.S257	0.007	205	0%	177	28.8%	18	66.6%	-	-	-	NULL
TFAP4	7023	genome.wustl.edu	37	16	4322677	4322677	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003223.2	-1	validated	p.V24A	1.000	52	0%	53	30.2%	13	30.7%	unknown(0)	deleterious(0)	-	NULL
GLIS2	84662	genome.wustl.edu	37	16	4384884	4384884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032575.2	+1	reviewed	p.H143P	1.000	37	0%	45	11.1%	11	18.1%	possibly_damaging(0.451)	deleterious(0)	deleterious(0.592)	NULL
SMG1	23049	genome.wustl.edu	37	16	18844455	18844456	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015092.4	-1	reviewed	p.P2866fs	1.000:0.998	-	-	-	-	-	-	-	-	-	NULL
ITPRIPL2	162073	genome.wustl.edu	37	16	19126141	19126141	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001034841.3	+1	validated	p.K120E	1.000	5	0.000	5	0.800	13	7.6%	probably_damaging(0.995)	tolerated(0.18)	deleterious(0.514)	NULL
ACSM3	6296	genome.wustl.edu	37	16	20803429	20803431	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005622.3	+1	validated	p.D479in_frame_del	0.995:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
LOC81691	81691	genome.wustl.edu	37	16	20826286	20826286	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030941.2	+1	validated	p.V97L	0.934	187	0%	158	29.1%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DCUN1D3	123879	genome.wustl.edu	37	16	20873776	20873776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173475.2	-1	validated	p.H29Y	1.000	162	0%	150	35.3%	7	28.5%	benign(0.314)	deleterious(0)	deleterious(0.542)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21031069	21031069	+	Missense_Mutation	SNP	T	T	C	rs193244009	by1000genomes	TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.I1967V	1.000	303	0%	288	31.6%	0	-	benign(0.001)	tolerated(0.6)	neutral(0.004)	NULL
DNAH3	55567	genome.wustl.edu	37	16	21065803	21065803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017539.1	-1	provisional	p.R1326Q	1.000	71	0%	63	33.3%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
PALB2	79728	genome.wustl.edu	37	16	23646230	23646230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024675.3	-1	reviewed	p.V546A	0.000	251	0%	265	29.8%	2	50%	possibly_damaging(0.631)	tolerated(0.14)	deleterious(0.470)	NULL
ERN2	10595	genome.wustl.edu	37	16	23712362	23712365	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033266.3	-1	validated	p.Y473fs	0.000:0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
SPNS1	83985	genome.wustl.edu	37	16	28993225	28993225	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142448.1	+1	validated	p.P271	0.933	134	0%	137	33.6%	68	39.7%	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
ZNF48	197407	genome.wustl.edu	37	16	30409933	30409933	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000495929	+1	known	p.*584R	0.872	15	0.000	9	0.444	11	45.4%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF768	79724	genome.wustl.edu	37	16	30536629	30536629	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024671.3	-1	validated	p.Q278*	0.976	94	0%	71	39.4%	81	58%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF785	146540	genome.wustl.edu	37	16	30594491	30594491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152458.5	-1	provisional	p.G203D	0.609	60	0%	37	43.2%	11	45.4%	benign(0)	tolerated(0.85)	neutral(0.001)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SHCBP1	79801	genome.wustl.edu	37	16	46638006	46638006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024745.4	-1	validated	p.R325C	0.110	55	0%	76	30.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DNAJA2	10294	genome.wustl.edu	37	16	46993036	46993036	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005880.3	-1	reviewed	p.V309D	1.000	107	0%	118	39%	75	54.6%	benign(0.029)	tolerated(0.05)	neutral(0.347)	HMMPfam_DnaJ_C,superfamily_HSP40/DnaJ peptide-binding domain
ZNF423	23090	genome.wustl.edu	37	16	49671791	49671791	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015069.2	-1	reviewed	p.V424	1.000	81	0%	84	29.8%	1	0%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2
ADCY7	113	genome.wustl.edu	37	16	50346020	50346020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001114.3	+1	reviewed	p.M841T	1.000	115	0%	84	28.6%	3	33.3%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_CYCc
CSNK2A2	1459	genome.wustl.edu	37	16	58220657	58220657	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001896.2	-1	validated	e3+2	1.000	250	0%	226	30.5%	0	-	-	-	-	-
CDH5	1003	genome.wustl.edu	37	16	66420786	66420786	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001795.3	+1	reviewed	p.V95	0.075	74	0%	61	19.7%	19	5.2%	possibly_damaging(0.837)	deleterious(0.02)	deleterious(0.703)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CDH5	1003	genome.wustl.edu	37	16	66426269	66426269	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001795.3	+1	reviewed	p.A400	0.000	95	0%	69	31.9%	20	5%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
CCDC79	283847	genome.wustl.edu	37	16	66830700	66830700	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136505.1	-1	provisional	p.M1T	0.979	705	0%	696	34.9%	0	-	benign(0.067)	deleterious(0)	neutral(0.449)	NULL
CDH16	1014	genome.wustl.edu	37	16	66945909	66945909	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004062.2	-1	reviewed	p.P561	0.981	104	0%	90	27.8%	254	48.4%	-	-	-	HMMSmart_SM00112,superfamily_Cadherin-like
CYB5B	80777	genome.wustl.edu	37	16	69458659	69458659	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030579.2	+1	validated	p.T25A	1.000	114	0%	93	33.3%	144	34.7%	benign(0.253)	deleterious(0.04)	neutral(0.375)	superfamily_Cytochrome b5-like heme/steroid binding domain
ENSG00000226232	0	genome.wustl.edu	37	16	70010477	70010477	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000437824	-1	known	p.P267	0.128	26	0%	24	33.3%	16	62.5%	-	-	-	HMMPfam_NPIP
PDPR	55066	genome.wustl.edu	37	16	70154496	70154496	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017990.3	+1	validated	p.A34fs	0.007	-	-	-	-	-	-	-	-	-	NULL
DNAAF1	123872	genome.wustl.edu	37	16	84188269	84188269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178452.4	+1	reviewed	p.L147P	1.000	127	0%	106	37.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1
KLHDC4	54758	genome.wustl.edu	37	16	87742953	87742953	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017566.3	-1	validated	p.D455	1.000	17	0%	18	33.3%	34	35.2%	-	-	-	HMMPfam_Kelch_1
ZNF469	84627	genome.wustl.edu	37	16	88502342	88502342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127464.1	+1	reviewed	p.P2794S	0.000	17	0%	24	45.8%	0	-	possibly_damaging(0.771)	tolerated(0.27)	neutral(0.320)	NULL
GALNS	2588	genome.wustl.edu	37	16	88908305	88908305	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000512.4	-1	reviewed	p.A107S	1.000	108	0%	90	38.9%	13	30.7%	benign(0.198)	tolerated(0.33)	neutral(0.043)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
CHMP1A	5119	genome.wustl.edu	37	16	89712404	89712404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001083314.1	-1	validated	p.A214V	0.000	62	0%	49	28.6%	98	27.5%	unknown(0)	-	-	NULL
KIAA0664	23277	genome.wustl.edu	37	17	2604453	2604453	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015229.3	-1	validated	p.A298T	0.984	70	0%	68	13.2%	25	12%	benign(0.001)	tolerated(0.7)	neutral(0.002)	superfamily_SSF103107
ARRB2	409	genome.wustl.edu	37	17	4621978	4621981	+	Frame_Shift_Del	DEL	GAGT	GAGT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	GAGT	GAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004313.3	+1	reviewed	p.D260fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Arrestin_C,superfamily_E set domains
MINK1	50488	genome.wustl.edu	37	17	4790976	4790976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153827.4	+1	reviewed	p.Q374L	1.000	23	0%	17	35.3%	11	18.1%	possibly_damaging(0.94)	tolerated(0.55)	neutral(0.392)	NULL
ARHGAP44	9912	genome.wustl.edu	37	17	12887912	12887912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014859.4	+1	validated	p.D668E	1.000	55	0%	40	42.5%	2	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
ENSG00000249596	0	genome.wustl.edu	37	17	18027769	18027769	+	RNA	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503497	-1	novel	NULL	0.003	64	0%	56	26.8%	0	-	-	-	-	-
ALKBH5	54890	genome.wustl.edu	37	17	18111597	18111597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017758.3	+1	validated	p.R358W	1.000	27	0%	19	42.1%	61	29.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
EPN2	22905	genome.wustl.edu	37	17	19186656	19186656	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014964.4	+1	reviewed	p.Y75C	1.000	85	0%	73	41.1%	16	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ENTH,superfamily_ENTH/VHS domain,HMMSmart_SM00273
MAPK7	5598	genome.wustl.edu	37	17	19285160	19285160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002749.3	+1	reviewed	p.R515L	1.000	27	0%	32	53.1%	11	45.4%	unknown(0)	deleterious(0)	-	NULL
ALDH3A1	218	genome.wustl.edu	37	17	19643674	19643674	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000691.4	-1	reviewed	p.T308	0.004	45	0%	30	23.3%	6	33.3%	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
SPECC1	92521	genome.wustl.edu	37	17	20107710	20107711	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033553.1	+1	validated	p.S119fs	0.945:0.988	-	-	-	-	-	-	-	-	-	NULL
RNF135	84282	genome.wustl.edu	37	17	29315015	29315015	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032322.3	+1	reviewed	p.S190	0.000	172	0%	220	29.5%	10	20%	-	-	-	NULL
FNDC8	54752	genome.wustl.edu	37	17	33454269	33454274	+	In_Frame_Del	DEL	TGCCCA	TGCCCA	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	TGCCCA	TGCCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017559.2	+1	validated	p.CP142in_frame_del	0.000:0.000:0.000:0.000:0.001:0.002	-	-	-	-	-	-	-	-	-	NULL
ACACA	31	genome.wustl.edu	37	17	35583305	35583305	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198834.1	-1	reviewed	p.Q1105H	1.000	238	0%	257	35.8%	1	100%	benign(0.01)	deleterious(0.01)	neutral(0.406)	HMMPfam_ACC_central
C17orf98	388381	genome.wustl.edu	37	17	36997562	36997562	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080465.2	-1	validated	p.R27	0.005	29	0%	21	42.9%	0	-	-	-	-	NULL
ENSG00000251119	0	genome.wustl.edu	37	17	42266286	42266289	+	RNA	DEL	TTTT	TTTT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	TTTT	TTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000509949	-1	novel	NULL	0.519:0.581:0.663:0.658	-	-	-	-	-	-	-	-	-	-
TMUB2	79089	genome.wustl.edu	37	17	42267965	42267965	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001076674.1	+1	validated	p.T233	0.017	86	0%	65	38.5%	52	38.4%	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
SLC25A39	51629	genome.wustl.edu	37	17	42397455	42397455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143780.1	-1	validated	p.P332T	1.000	82	1.2%	61	36.1%	542	47.2%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
GPATCH8	23131	genome.wustl.edu	37	17	42477932	42477932	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002909.1	-1	validated	p.T505A	0.000	160	0%	167	34.1%	8	37.5%	unknown(0)	tolerated(0.59)	-	NULL
PLCD3	113026	genome.wustl.edu	37	17	43190533	43190533	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133373.3	-1	reviewed	p.P696L	0.000	32	0%	38	26.3%	5	20%	-	-	-	NULL
TEX34	124783	genome.wustl.edu	37	17	43332555	43332555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152343.2	-1	validated	p.A332T	0.219	133	0%	119	31.9%	4	0%	possibly_damaging(0.507)	deleterious(0)	deleterious(0.614)	NULL
PLEKHM1	9842	genome.wustl.edu	37	17	43531402	43531402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014798.2	-1	reviewed	p.R606C	1.000	20	0%	20	30%	10	10%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
KANSL1	284058	genome.wustl.edu	37	17	44109451	44109451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015443.2	-1	validated	p.T1018A	1.000	72	0%	58	36.2%	26	11.5%	possibly_damaging(0.95)	tolerated(0.06)	deleterious(0.716)	NULL
KANSL1	284058	genome.wustl.edu	37	17	44111620	44111621	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015443.2	-1	validated	p.S858fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ITGB3	3690	genome.wustl.edu	37	17	45351855	45351855	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000212.2	+1	reviewed	p.A50	1.000	78	0%	57	21.1%	1	0%	-	-	-	HMMPfam_Integrin_beta,HMMSmart_SM00187,HMMSmart_SM00423
HOXB3	3213	genome.wustl.edu	37	17	46627789	46627789	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002146.4	-1	reviewed	p.C401	1.000	309	0%	271	34.7%	50	36%	-	-	-	NULL
HOXB13	10481	genome.wustl.edu	37	17	46805363	46805363	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006361.5	-1	reviewed	p.A198V	0.813	67	0%	65	26.2%	7	0%	probably_damaging(0.989)	tolerated(0.1)	deleterious(0.726)	NULL
TTLL6	284076	genome.wustl.edu	37	17	46865187	46865187	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130918.1	-1	validated	p.R525	1.000	153	0%	105	33.3%	0	-	-	-	-	NULL
RSAD1	55316	genome.wustl.edu	37	17	48559551	48559551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018346.1	+1	provisional	p.V192M	0.733	23	0%	20	25%	7	14.2%	probably_damaging(0.957)	tolerated(0.15)	deleterious(0.641)	HMMSmart_Elp3,HMMPfam_Radical_SAM,superfamily_SSF102114
KIF2B	84643	genome.wustl.edu	37	17	51901582	51901582	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032559.4	+1	validated	p.C396	0.999	153	0%	129	31%	0	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
BZRAP1	9256	genome.wustl.edu	37	17	56404079	56404079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004758.2	-1	validated	p.R136C	1.000	56	0%	36	36.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
PPM1D	8493	genome.wustl.edu	37	17	58677789	58677789	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003620.2	+1	reviewed	p.Y5C	1.000	8	0.000	14	0.571	4	50%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain
TANC2	26115	genome.wustl.edu	37	17	61498145	61498145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025185.3	+1	validated	p.Q1601R	0.977	21	0%	22	27.3%	1	0%	possibly_damaging(0.891)	deleterious(0)	deleterious(0.795)	NULL
MAP3K3	4215	genome.wustl.edu	37	17	61768517	61768517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203351.1	+1	reviewed	p.R454H	1.000	79	0%	66	34.8%	12	50%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ABCA8	10351	genome.wustl.edu	37	17	66865893	66865893	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007168.2	-1	reviewed	p.L1513	0.999	141	0%	141	31.2%	3	0%	-	-	-	NULL
GGA3	23163	genome.wustl.edu	37	17	73238523	73238523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138619.2	-1	reviewed	p.R214H	1.000	241	0%	231	36.8%	13	30.7%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_GAT,superfamily_GAT-like domain
UNK	85451	genome.wustl.edu	37	17	73814820	73814820	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080419.1	+1	provisional	p.G566D	1.000	113	0%	54	16.7%	13	15.3%	possibly_damaging(0.856)	tolerated(0.14)	deleterious(0.580)	NULL
MGAT5B	146664	genome.wustl.edu	37	17	74944050	74944050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198955.1	+1	validated	p.A697T	0.981	23	0%	13	53.8%	0	-	benign(0.132)	deleterious(0.05)	neutral(0.356)	NULL
ENSG00000204283	0	genome.wustl.edu	37	17	75878385	75878385	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000374983	-1	known	p.A30T	0.000	454	0%	365	35.1%	0	-	possibly_damaging(0.753)	-	-	NULL
LGALS3BP	3959	genome.wustl.edu	37	17	76972104	76972104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005567.3	-1	reviewed	p.R63W	1.000	13	0%	17	41.2%	786	39%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SR,superfamily_Srcr_receptor
FOXK2	3607	genome.wustl.edu	37	17	80529734	80529734	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004514.3	+1	reviewed	p.D299	1.000	77	0%	95	25.3%	25	44%	-	-	-	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
THOC1	9984	genome.wustl.edu	37	18	216486	216486	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005131.2	-1	validated	p.P534	1.000	330	0%	278	40.3%	15	46.6%	-	-	-	NULL
ZFP161	7541	genome.wustl.edu	37	18	5291241	5291241	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143823.1	-1	validated	p.E322	1.000	491	0%	340	25.3%	9	44.4%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CEP192	55125	genome.wustl.edu	37	18	13095639	13095639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032142.3	+1	validated	p.T1535I	0.986	81	0%	83	10.8%	5	20%	probably_damaging(0.968)	deleterious(0.02)	deleterious(0.793)	NULL
DSG2	1829	genome.wustl.edu	37	18	29125921	29125921	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001943.3	+1	reviewed	p.A858T	0.000	42	0%	57	28.1%	32	50%	benign(0.024)	tolerated(0.57)	neutral(0.007)	NULL
DCC	1630	genome.wustl.edu	37	18	50705392	50705392	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005215.3	+1	reviewed	p.K493N	0.997	125	0%	148	19.6%	0	-	benign(0.049)	tolerated(0.14)	neutral(0.253)	HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CDH7	1005	genome.wustl.edu	37	18	63526277	63526277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004361.2	+1	reviewed	p.G497W	1.000	79	0%	113	32.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,superfamily_Cadherin-like
DSEL	92126	genome.wustl.edu	37	18	65180862	65180862	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032160.2	-1	validated	p.G338	0.992	130	0%	133	29.3%	0	-	-	-	-	NULL
ZNF407	55628	genome.wustl.edu	37	18	72346148	72346148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017757.2	+1	reviewed	p.R1058H	0.994	49	0%	62	32.3%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00451,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF407	55628	genome.wustl.edu	37	18	72347655	72347655	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017757.2	+1	reviewed	p.T1560	0.998	57	0%	60	38.3%	2	0%	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SALL3	27164	genome.wustl.edu	37	18	76757066	76757066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_171999.2	+1	validated	p.A1216V	1.000	55	0%	44	25%	0	-	possibly_damaging(0.753)	tolerated(0.07)	deleterious(0.596)	NULL
RANBP3	8498	genome.wustl.edu	37	19	5932507	5932507	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007322.2	-1	reviewed	p.P174L	1.000	58	0%	35	34.3%	41	21.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLEC4M	10332	genome.wustl.edu	37	19	7831500	7831500	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_026707.1	+1	reviewed	NULL	0.001	60	0%	60	28.3%	0	-	-	-	-	-
MUC16	94025	genome.wustl.edu	37	19	8996408	8996408	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.Q13722E	0.007	179	0%	168	33.9%	15	46.6%	benign(0.055)	tolerated(0.42)	neutral(0.018)	HMMPfam_SEA,superfamily_SEA domain
C19orf38	255809	genome.wustl.edu	37	19	10979939	10979939	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136482.1	+1	provisional	p.G197S	0.000	92	0%	74	29.7%	1	0%	possibly_damaging(0.816)	deleterious(0)	deleterious(0.753)	NULL
ENSG00000233422	0	genome.wustl.edu	37	19	14857188	14857190	+	RNA	DEL	TTT	TTT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	TTT	TTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000430444	+1	known	NULL	0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	-
CYP4F22	126410	genome.wustl.edu	37	19	15648370	15648370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173483.3	+1	reviewed	p.G149D	0.968	92	0%	66	25.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
CIB3	117286	genome.wustl.edu	37	19	16279082	16279082	+	Missense_Mutation	SNP	C	C	T	rs186929589	by1000genomes	TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_054113.2	-1	reviewed	p.R71H	1.000	56	0%	52	26.9%	0	-	probably_damaging(0.993)	deleterious(0.03)	deleterious(0.815)	superfamily_EF-hand
TMEM38A	79041	genome.wustl.edu	37	19	16791318	16791318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024074.1	+1	provisional	p.A131V	1.000	110	0%	110	28.2%	4	50%	probably_damaging(0.998)	tolerated(0.8)	deleterious(0.475)	HMMPfam_DUF714
NWD1	284434	genome.wustl.edu	37	19	16925956	16925956	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001007525.2	+1	validated	p.S1370fs	0.991	-	-	-	-	-	-	-	-	-	NULL
SLC27A1	376497	genome.wustl.edu	37	19	17597549	17597549	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198580.1	+1	provisional	p.A115	0.061	10	0.000	7	0.571	25	28%	-	-	-	HMMPfam_AMP-binding,superfamily_SSF56801
MAST3	23031	genome.wustl.edu	37	19	18254744	18254744	+	Silent	SNP	C	C	T	rs55972498		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015016.1	+1	validated	p.P808	0.008	35	0%	32	12.5%	2	50%	-	-	-	NULL
COMP	1311	genome.wustl.edu	37	19	18901670	18901670	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000095.2	-1	reviewed	p.L52	0.983	4	0.000	5	0.800	1	0%	-	-	-	NULL
ATP13A1	57130	genome.wustl.edu	37	19	19772892	19772892	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000291503	-1	known	p.P12T	0.000	59	0%	53	32.1%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
ZNF91	7644	genome.wustl.edu	37	19	23544427	23544427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003430.2	-1	validated	p.H452Y	0.427	110	0%	100	27%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RHPN2	85415	genome.wustl.edu	37	19	33502617	33502617	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033103.4	-1	reviewed	p.P187	0.112	34	0%	37	29.7%	39	43.5%	-	-	-	HMMPfam_BRO1
FFAR2	2867	genome.wustl.edu	37	19	35941257	35941257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005306.2	+1	reviewed	p.A214V	0.998	42	0%	24	29.2%	1	0%	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_7tm_1,superfamily_SSF81321
C19orf55	148137	genome.wustl.edu	37	19	36258849	36258849	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039887.1	+1	predicted	p.P368S	0.001	14	0%	20	55%	9	44.4%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
CLIP3	25999	genome.wustl.edu	37	19	36518084	36518084	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015526.1	-1	provisional	p.R86C	1.000	191	0%	171	31.6%	20	5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Ankyrin repeat
ZNF260	339324	genome.wustl.edu	37	19	37005715	37005715	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001012756.2	-1	validated	p.G142	0.930	222	0%	228	30.3%	5	40%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PAF1	54623	genome.wustl.edu	37	19	39879621	39879621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019088.2	-1	provisional	p.P201L	0.999	177	0%	221	33.9%	69	47.8%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Paf1
MAP3K10	4294	genome.wustl.edu	37	19	40698268	40698268	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002446.3	+1	reviewed	p.G110	1.000	54	0%	44	36.4%	4	50%	-	-	-	superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase
PRX	57716	genome.wustl.edu	37	19	40901829	40901829	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181882.2	-1	reviewed	p.G810	0.987	58	0%	62	46.8%	1	0%	-	-	-	NULL
CYP2A13	1553	genome.wustl.edu	37	19	41594886	41594886	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000766.3	+1	reviewed	p.V78D	0.006	123	0%	112	10.7%	0	-	possibly_damaging(0.732)	deleterious(0)	deleterious(0.712)	HMMPfam_p450,superfamily_Cytochrome_P450
SRRM5	100170229	genome.wustl.edu	37	19	44116588	44116588	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145641.1	+1	validated	p.K105	0.999	72	0%	61	44.3%	0	-	-	-	-	NULL
FBXO46	23403	genome.wustl.edu	37	19	46215898	46215898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080469.1	-1	provisional	p.P286S	0.994	21	0%	11	45.5%	15	46.6%	benign(0.05)	tolerated(0.39)	neutral(0.019)	NULL
NOVA2	4858	genome.wustl.edu	37	19	46457055	46457055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002516.2	-1	validated	p.P127T	1.000	443	0%	337	32%	5	0%	unknown(0)	tolerated(0.19)	-	superfamily_SSF54791
LOC100287311	100287311	genome.wustl.edu	37	19	47813096	47813096	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343688.1	-1	model	p.W183*	0.359	74	0%	86	30.2%	0	-	-	-	-	NULL
ZNF114	163071	genome.wustl.edu	37	19	48785666	48785666	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153608.1	+1	provisional	p.T16	0.546	111	0%	123	32.5%	1	100%	-	-	-	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
PLEKHA4	57664	genome.wustl.edu	37	19	49364901	49364901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020904.2	-1	validated	p.G81S	0.989	54	0%	24	33.3%	14	28.5%	possibly_damaging(0.915)	deleterious(0.03)	deleterious(0.731)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
RCN3	57333	genome.wustl.edu	37	19	50045997	50045997	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020650.2	+1	provisional	p.S289	1.000	36	0%	30	33.3%	68	2.9%	-	-	-	HMMSmart_EFh,superfamily_SSF47473
NOSIP	51070	genome.wustl.edu	37	19	50060427	50060427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015953.3	-1	provisional	p.G113D	0.998	40	0%	25	28%	132	40.9%	benign(0.002)	tolerated(0.37)	neutral(0.019)	superfamily_SSF57850
PRR12	57479	genome.wustl.edu	37	19	50098211	50098211	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020719.1	+1	validated	p.R207C	1.000	20	0%	23	30.4%	9	55.5%	unknown(0)	-	-	NULL
IL4I1	259307	genome.wustl.edu	37	19	50399261	50399261	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_172374.1	-1	reviewed	p.S43	0.000	86	0%	83	33.7%	41	31.7%	-	-	-	NULL
ZNF473	25888	genome.wustl.edu	37	19	50549146	50549146	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001006656.1	+1	validated	p.T482	0.000	70	0%	89	30.3%	3	66.6%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
SIGLEC10	89790	genome.wustl.edu	37	19	51919250	51919250	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033130.4	-1	validated	p.E309G	0.985	46	0%	29	34.5%	2	0%	possibly_damaging(0.758)	deleterious(0.03)	deleterious(0.645)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
SIGLEC6	946	genome.wustl.edu	37	19	52034865	52034865	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001245.5	-1	validated	p.L13Q	0.008	48	0%	62	30.6%	0	-	possibly_damaging(0.9)	deleterious(0.01)	deleterious(0.762)	NULL
ENSG00000245932	0	genome.wustl.edu	37	19	53302764	53302764	+	RNA	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000500436	+1	known	NULL	0.000	132	0%	180	38.3%	7	42.8%	-	-	-	-
LENG1	79165	genome.wustl.edu	37	19	54660603	54660603	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024316.1	-1	provisional	p.R158L	0.039	129	0%	104	26%	12	16.6%	benign(0.012)	tolerated(0.19)	neutral(0.050)	NULL
PTPRH	5794	genome.wustl.edu	37	19	55702904	55702906	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002842.3	-1	validated	p.K783in_frame_del	0.000:0.002:0.029	-	-	-	-	-	-	-	-	-	NULL
PPP6R1	22870	genome.wustl.edu	37	19	55756697	55756697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014931.3	-1	validated	p.M163T	1.000	53	0%	46	10.9%	53	7.5%	benign(0.036)	tolerated(0.07)	neutral(0.321)	HMMPfam_SAPS
ZNF587	84914	genome.wustl.edu	37	19	58371232	58371232	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000339656	+1	known	p.R484	0.002	174	0%	204	26%	4	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZSCAN18	65982	genome.wustl.edu	37	19	58619358	58619358	+	RNA	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NR_027135.1	-1	validated	NULL	0.334	33	0%	31	29%	0	-	-	-	-	-
ZNF446	55663	genome.wustl.edu	37	19	58991009	58991009	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017908.2	+1	provisional	e4-1	1.000	67	0%	76	26.3%	0	-	-	-	-	-
TGM6	343641	genome.wustl.edu	37	20	2380984	2380984	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198994.2	+1	validated	p.V295M	0.940	69	0%	79	20.3%	0	-	possibly_damaging(0.883)	deleterious(0)	deleterious(0.789)	HMMPfam_Transglut_core,HMMSmart_SM00460,superfamily_Cysteine proteinases
UBOX5	22888	genome.wustl.edu	37	20	3102487	3102487	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014948.2	-1	validated	p.P266	0.981	20	0%	24	41.7%	11	45.4%	-	-	-	HMMPfam_U-box,HMMSmart_SM00504,superfamily_RING/U-box
SMOX	54498	genome.wustl.edu	37	20	4163401	4163401	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175839.1	+1	reviewed	p.S425	0.475	56	0%	45	35.6%	58	36.2%	-	-	-	HMMPfam_Amino_oxidase,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain
ID1	3397	genome.wustl.edu	37	20	30193503	30193503	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002165.2	+1	reviewed	p.L105F	1.000	33	0%	36	33.3%	317	37.8%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_HLH,HMMSmart_SM00353,superfamily_HLH helix-loop-helix DNA-binding domain
MYLK2	85366	genome.wustl.edu	37	20	30408197	30408197	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033118.3	+1	reviewed	p.S107	0.000	19	0%	11	45.5%	0	-	-	-	-	NULL
C20orf152	140894	genome.wustl.edu	37	20	34571911	34571911	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080834.1	+1	predicted	p.R139C	1.000	193	0%	231	34.2%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
CHD6	84181	genome.wustl.edu	37	20	40162126	40162126	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032221.3	-1	reviewed	p.D39	0.727	62	0%	55	40%	3	66.6%	-	-	-	NULL
SGK2	10110	genome.wustl.edu	37	20	42200717	42200717	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016276.3	+1	reviewed	p.G239	0.998	108	0%	92	39.1%	8	87.5%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MATN4	8785	genome.wustl.edu	37	20	43934198	43934198	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003833.3	-1	reviewed	p.V9M	0.000	90	0%	88	15.9%	0	-	unknown(0)	deleterious(0.02)	-	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45850047	45850047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183047.1	-1	reviewed	p.S1066N	0.021	196	0%	176	21.6%	14	28.5%	benign(0)	tolerated(0.66)	neutral(0.003)	NULL
ZMYND8	23613	genome.wustl.edu	37	20	45865068	45865068	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183047.1	-1	reviewed	e16+2	1.000	109	0%	99	33.3%	4	100%	-	-	-	-
NFATC2	4773	genome.wustl.edu	37	20	50090623	50090623	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_173091.2	-1	reviewed	p.D534	1.000	138	0%	121	36.4%	2	0%	-	-	-	superfamily_p53-like transcription factors,HMMPfam_RHD
COL9A3	1299	genome.wustl.edu	37	20	61463533	61463533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001853.3	+1	reviewed	p.G439R	1.000	58	0%	46	28.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Collagen
COL20A1	57642	genome.wustl.edu	37	20	61944499	61944499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020882.2	+1	validated	p.V703I	0.289	26	0%	26	53.8%	0	-	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PRIC285	85441	genome.wustl.edu	37	20	62195532	62195532	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037335.2	-1	reviewed	p.T1548M	0.000	9	0.000	9	0.667	17	52.9%	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_RNB
JAM2	58494	genome.wustl.edu	37	21	27012198	27012198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021219.2	+1	reviewed	p.G22A	1.000	56	0%	45	44.4%	2	0%	benign(0.011)	tolerated(1)	neutral(0.001)	NULL
JAM2	58494	genome.wustl.edu	37	21	27074531	27074531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021219.2	+1	reviewed	p.A216V	1.000	174	0%	155	27.1%	6	0%	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
DYRK1A	1859	genome.wustl.edu	37	21	38877606	38877606	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001396.3	+1	reviewed	p.T420	1.000	112	0%	122	33.6%	10	70%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RIPK4	54101	genome.wustl.edu	37	21	43161861	43161861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020639.2	-1	reviewed	p.N498D	1.000	66	0%	33	39.4%	45	55.5%	possibly_damaging(0.931)	tolerated(0.14)	deleterious(0.627)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
PRDM15	63977	genome.wustl.edu	37	21	43281687	43281687	+	Silent	SNP	G	G	A	rs185333589	by1000genomes	TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022115.3	-1	validated	p.C292	0.179	110	0%	89	41.6%	0	-	-	-	-	NULL
ZNF295	49854	genome.wustl.edu	37	21	43412316	43412317	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098402.1	-1	validated	p.E630fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KRTAP10-1	386677	genome.wustl.edu	37	21	45959615	45959615	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198691.2	-1	reviewed	p.S140Y	0.618	163	0%	166	41%	0	-	unknown(0)	-	-	NULL
PCBP3	54039	genome.wustl.edu	37	21	47360108	47360108	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020528.2	+1	reviewed	p.N358	0.996	61	0%	46	28.3%	2	0%	-	-	-	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I)
COL6A2	1292	genome.wustl.edu	37	21	47541469	47541469	+	Splice_Site	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001849.3	+1	reviewed	e17-1	1.000	45	0%	38	13.2%	1	0%	-	-	-	-
C21orf56	84221	genome.wustl.edu	37	21	47581412	47581412	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142854.1	-1	validated	p.A302T	0.850	19	0%	20	20%	31	25.8%	possibly_damaging(0.711)	tolerated(0.65)	neutral(0.260)	NULL
PCNT	5116	genome.wustl.edu	37	21	47852020	47852020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006031.5	+1	reviewed	p.R2881Q	0.000	44	0%	49	46.9%	6	16.6%	benign(0.025)	tolerated(0.52)	neutral(0.010)	NULL
DGCR2	9993	genome.wustl.edu	37	22	19055721	19055721	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005137.2	-1	reviewed	p.R74C	0.958	26	0%	24	29.2%	81	39.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_LDL_rcpt_classA_cys-rich
MED15	51586	genome.wustl.edu	37	22	20938680	20938680	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001003891.1	+1	reviewed	p.A591T	0.999	144	0%	136	36%	80	40%	possibly_damaging(0.951)	tolerated(0.15)	deleterious(0.635)	NULL
LZTR1	8216	genome.wustl.edu	37	22	21350272	21350272	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006767.3	+1	reviewed	p.R697Q	1.000	41	0%	31	35.5%	19	31.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
TOP3B	8940	genome.wustl.edu	37	22	22314082	22314082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003935.3	-1	reviewed	p.R561C	1.000	28	0%	25	36%	19	15.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Prokaryotic type I DNA topoisomerase,HMMPfam_Topoisom_bac
MMP11	4320	genome.wustl.edu	37	22	24124435	24124435	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005940.3	+1	reviewed	p.D366	0.057	17	0%	16	43.8%	303	0.9%	-	-	-	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
SLC2A11	66035	genome.wustl.edu	37	22	24217369	24217369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030807.3	+1	validated	p.R123H	0.137	116	0%	95	14.7%	6	16.6%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
TTC28	23331	genome.wustl.edu	37	22	28503919	28503919	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145418.1	-1	validated	p.H638	1.000	81	0%	79	30.4%	4	0%	-	-	-	HMMPfam_TPR_2,HMMSmart_TPR,superfamily_SSF48452
RHBDD3	25807	genome.wustl.edu	37	22	29656321	29656323	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012265.1	-1	provisional	p.S326in_frame_del	1.000:1.000:0.991	-	-	-	-	-	-	-	-	-	HMMPfam_UBA
FBXO7	25793	genome.wustl.edu	37	22	32894389	32894389	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012179.3	+1	reviewed	p.R481C	0.872	55	0%	72	34.7%	157	40.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
RASD2	23551	genome.wustl.edu	37	22	35947610	35947610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014310.3	+1	reviewed	p.R111H	1.000	82	0%	75	33.3%	1	0%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMSmart_RAS,HMMPfam_Ras,superfamily_SSF52540
CACNA1I	8911	genome.wustl.edu	37	22	40080413	40080413	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021096.3	+1	reviewed	p.G1979	0.000	101	0%	81	39.5%	0	-	-	-	-	NULL
TNRC6B	23112	genome.wustl.edu	37	22	40666204	40666204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024843.1	+1	validated	p.W215L	1.000	85	0%	80	31.2%	2	100%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_Ago_hook
MKL1	57591	genome.wustl.edu	37	22	40816999	40816999	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020831.3	-1	validated	p.D245fs	1.000	-	-	-	-	-	-	-	-	-	NULL
ACO2	50	genome.wustl.edu	37	22	41924513	41924513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098.2	+1	reviewed	p.G747R	1.000	304	0%	289	38.8%	435	45.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Aconitase/3IPM_dehydase_swvl
TSPO	706	genome.wustl.edu	37	22	43558947	43558947	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000714.4	+1	reviewed	p.V154I	0.037	17	0%	20	40%	1035	37.4%	benign(0.001)	tolerated(1)	-	HMMPfam_TspO_MBR
CELSR1	9620	genome.wustl.edu	37	22	46805016	46805016	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014246.1	-1	reviewed	p.S1701	0.999	29	0%	44	18.2%	31	25.8%	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
MAPK12	6300	genome.wustl.edu	37	22	50693654	50693654	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002969.3	-1	reviewed	p.D332	0.889	113	0%	98	32.7%	25	24%	-	-	-	superfamily_Kinase_like
SBF1	6305	genome.wustl.edu	37	22	50903280	50903280	+	Missense_Mutation	SNP	C	C	T	rs192339446	by1000genomes	TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002972.2	-1	validated	p.V467I	1.000	24	0%	30	40%	10	10%	benign(0.002)	tolerated(1)	-	NULL
CPT1B	1375	genome.wustl.edu	37	22	51011469	51011469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145135.1	-1	reviewed	p.R396H	1.000	42	0%	21	42.9%	14	64.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases
PPP2R3B	28227	genome.wustl.edu	37	X	322318	322318	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013239.4	-1	reviewed	p.T111I	0.994	171	0%	164	33.5%	6	0%	possibly_damaging(0.697)	tolerated(0.26)	neutral(0.284)	NULL
IL3RA	3563	genome.wustl.edu	37	X	1471336	1471336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002183.2	+1	reviewed	p.R185W	0.000	306	0%	281	38.8%	26	15.3%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	superfamily_FN_III-like
ASMT	438	genome.wustl.edu	37	X	1743171	1743171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004043.2	+1	reviewed	p.R85L	0.801	80	0%	42	9.5%	0	-	benign(0.089)	tolerated(0.09)	neutral(0.303)	HMMPfam_Methyltransf_2,superfamily_SSF46785
ARSH	347527	genome.wustl.edu	37	X	2947308	2947308	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001011719.1	+1	validated	p.L407P	0.960	223	0%	172	34.3%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
SHROOM2	357	genome.wustl.edu	37	X	9841713	9841713	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001649.2	+1	reviewed	p.A63T	0.912	147	0%	146	33.6%	1	0%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
NHS	4810	genome.wustl.edu	37	X	17745131	17745131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198270.2	+1	reviewed	p.A948T	1.000	132	0%	119	34.5%	2	0%	probably_damaging(0.979)	deleterious(0.01)	deleterious(0.828)	NULL
NHS	4810	genome.wustl.edu	37	X	17746168	17746168	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198270.2	+1	reviewed	p.V1293	0.000	94	0%	90	34.4%	2	0%	-	-	-	NULL
RBM10	8241	genome.wustl.edu	37	X	47040715	47040716	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005676.3	+1	reviewed	p.E451fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
UBA1	7317	genome.wustl.edu	37	X	47058449	47058449	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003334.3	+1	reviewed	p.G40	1.000	214	0%	172	20.3%	156	5.7%	-	-	-	NULL
PORCN	64840	genome.wustl.edu	37	X	48368228	48368228	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203475.1	+1	reviewed	p.Q7R	1.000	56	0%	59	30.5%	12	0%	benign(0)	tolerated(0.74)	neutral(0.002)	NULL
WAS	7454	genome.wustl.edu	37	X	48543955	48543955	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000377.2	+1	reviewed	p.E98V	1.000	171	0%	135	20.7%	10	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_WH1,HMMSmart_WH1,superfamily_SSF50729
CCNB3	85417	genome.wustl.edu	37	X	50051776	50051776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033031.2	+1	reviewed	p.D203Y	0.000	62	0%	73	31.5%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
MAGED1	9500	genome.wustl.edu	37	X	51639644	51639644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005333.1	+1	reviewed	p.T354M	0.968	69	0%	48	47.9%	178	73%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LAS1L	81887	genome.wustl.edu	37	X	64749620	64749620	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031206.4	-1	validated	p.V218D	0.000	532	0%	450	10.4%	18	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
EFNB1	1947	genome.wustl.edu	37	X	68059543	68059543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004429.4	+1	reviewed	p.R148Q	1.000	137	0%	116	27.6%	51	86.2%	benign(0.389)	tolerated(0.67)	neutral(0.127)	HMMPfam_Ephrin,superfamily_Cupredoxin
ARMCX1	51309	genome.wustl.edu	37	X	100809032	100809032	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016608.1	+1	reviewed	p.L373	1.000	84	0%	78	39.7%	2	0%	-	-	-	HMMPfam_DUF634,superfamily_ARM-type_fold
MID2	11043	genome.wustl.edu	37	X	107084192	107084192	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012216.3	+1	reviewed	p.L99	1.000	87	0%	66	39.4%	5	0%	-	-	-	superfamily_RING/U-box
TEX13B	56156	genome.wustl.edu	37	X	107224633	107224633	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031273.2	-1	reviewed	p.A206T	0.000	37	0%	32	53.1%	0	-	benign(0.164)	deleterious(0.02)	neutral(0.398)	NULL
CAPN6	827	genome.wustl.edu	37	X	110495637	110495637	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014289.3	-1	reviewed	p.M199I	0.998	151	0%	133	41.4%	28	96.4%	benign(0.007)	tolerated(0.07)	neutral(0.319)	HMMPfam_Peptidase_C2,HMMSmart_CysPc,superfamily_SSF54001
DCX	1641	genome.wustl.edu	37	X	110653422	110653422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000555.2	-1	reviewed	p.V150M	1.000	299	0%	285	30.9%	1	100%	possibly_damaging(0.839)	deleterious(0.02)	deleterious(0.704)	HMMSmart_SM00537,superfamily_Doublecortin (DC)
RBMXL3	139804	genome.wustl.edu	37	X	114426342	114426342	+	Missense_Mutation	SNP	G	G	A	rs182038264	by1000genomes	TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145346.1	+1	validated	p.E780K	0.126	46	0%	44	52.3%	0	-	benign(0.35)	deleterious(0)	deleterious(0.555)	NULL
LUZP4	51213	genome.wustl.edu	37	X	114540909	114540909	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016383.3	+1	validated	p.R161Q	0.001	171	0%	178	31.5%	0	-	benign(0.019)	tolerated(0.23)	neutral(0.043)	NULL
LAMP2	3920	genome.wustl.edu	37	X	119602962	119602962	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001122606.1	-1	reviewed	p.L21	0.590	42	0%	29	41.4%	80	62.5%	-	-	-	NULL
STAG2	10735	genome.wustl.edu	37	X	123200240	123200240	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001042749.1	+1	validated	p.V740fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_ARM-type_fold
GPR119	139760	genome.wustl.edu	37	X	129518803	129518803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178471.2	-1	reviewed	p.A207S	0.991	117	0%	95	18.9%	0	-	benign(0.055)	tolerated(0.38)	neutral(0.021)	HMMPfam_7tm_1,superfamily_SSF81321
HS6ST2	90161	genome.wustl.edu	37	X	132091210	132091210	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077188.1	-1	reviewed	p.P191	0.954	43	0%	30	33.3%	3	0%	-	-	-	HMMPfam_HS6ST
FAM127C	441518	genome.wustl.edu	37	X	134156426	134156426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001078173.1	-1	validated	p.R22C	0.071	30	0%	39	48.7%	89	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FAM127B	26071	genome.wustl.edu	37	X	134185959	134185959	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001078172.1	-1	validated	p.N60	0.243	107	0%	95	28.4%	282	0%	-	-	-	NULL
SLITRK2	84631	genome.wustl.edu	37	X	144906205	144906205	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001144003.2	+1	reviewed	p.L754	0.995	118	0%	99	22.2%	0	-	-	-	-	NULL
PNCK	139728	genome.wustl.edu	37	X	152936842	152936842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000370142	-1	known	p.R194H	0.000	30	0%	35	34.3%	0	-	possibly_damaging(0.574)	tolerated(0.17)	neutral(0.256)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PNCK	139728	genome.wustl.edu	37	X	152936949	152936949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000449157	-1	known	p.R198K	0.062	42	0%	45	35.6%	0	-	-	-	-	NULL
L1CAM	3897	genome.wustl.edu	37	X	153133559	153133559	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000455590	-1	known	p.G32D	0.000	51	0%	33	21.2%	1	0%	-	-	-	HMMPfam_I-set,superfamily_Immunoglobulin
ATP6AP1	537	genome.wustl.edu	37	X	153660232	153660232	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001183.4	+1	reviewed	p.S115	0.994	101	0%	84	38.1%	189	0%	-	-	-	HMMPfam_ATP-synt_S1
IL9R	3581	genome.wustl.edu	37	X	155235059	155235059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17H-01	TCGA-D1-A17H-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002186.2	+1	reviewed	p.E232D	0.002	313	0%	251	29.9%	1	0%	benign(0.273)	tolerated(0.08)	neutral(0.329)	PatternScan_HEMATOPO_REC_S_F1,superfamily_FN_III-like
