Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
NPHP4	261734	genome.wustl.edu	37	1	5925318	5925318	+	Silent	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015102.2	-1	reviewed	p.A1220	0.000	10	0%	27	51.9%	-	-	-	-	-	NULL
LUZP1	7798	genome.wustl.edu	37	1	23420409	23420409	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142546.1	-1	reviewed	p.R116*	1.000	63	0%	64	53.1%	-	-	-	-	-	HMMPfam_CortBP2
TMEM222	84065	genome.wustl.edu	37	1	27657266	27657266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032125.2	+1	validated	p.R84W	1.000	46	0%	40	22.5%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_DUF778
MFSD2A	84879	genome.wustl.edu	37	1	40432829	40432829	+	Silent	SNP	C	C	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136493.1	+1	validated	p.L346	1.000	49	0%	49	55.1%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
FCER1A	2205	genome.wustl.edu	37	1	159272164	159272164	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002001.2	+1	reviewed	p.A4S	0.000	42	0%	47	40.4%	-	-	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
ARID4B	51742	genome.wustl.edu	37	1	235359391	235359400	+	Frame_Shift_Del	DEL	AGGTCTTACT	AGGTCTTACT	-	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	AGGTCTTACT	AGGTCTTACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016374.5	-1	reviewed	p.I624fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00333
ENSG00000228763	0	genome.wustl.edu	37	2	109294892	109294893	+	Splice_Site	INS	-	-	A	rs113803996	byCluster;by1000genomes	TCGA-EY-A212-01	TCGA-EY-A212-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000411710	-1	known	NULL	0.001:0.000	-	-	-	-	-	-	-	-	-	-
KCNJ3	3760	genome.wustl.edu	37	2	155711243	155711243	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002239.2	+1	reviewed	p.M308I	1.000	116	0%	121	46.3%	-	-	-	-	-	HMMPfam_IRK,superfamily_Ig_E-set
G6PC2	57818	genome.wustl.edu	37	2	169764244	169764244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021176.2	+1	reviewed	p.K241N	1.000	55	0%	82	42.7%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SETD5	55209	genome.wustl.edu	37	3	9514988	9514989	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080517.1	+1	provisional	p.S1089fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NUP210	23225	genome.wustl.edu	37	3	13413342	13413342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024923.2	-1	reviewed	p.P593Q	0.810	11	0%	15	26.7%	-	-	benign(0.057)	deleterious(0.04)	neutral(0.352)	NULL
ALAS1	211	genome.wustl.edu	37	3	52239987	52239987	+	Silent	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000688.4	+1	validated	p.S311	0.012	81	0%	126	36.5%	-	-	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ATP2C1	27032	genome.wustl.edu	37	3	130650887	130650887	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001001486.1	+1	reviewed	p.N47Y	1.000	63	1.6%	162	20.4%	-	-	benign(0.091)	deleterious(0)	neutral(0.451)	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M
NPHP3	27031	genome.wustl.edu	37	3	132415574	132415574	+	Splice_Site	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153240.3	-1	reviewed	e15+1	1.000	65	0%	72	40.3%	-	-	-	-	-	-
RASA2	5922	genome.wustl.edu	37	3	141277797	141277797	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006506.2	+1	reviewed	p.E252Q	1.000	39	0%	47	10.6%	-	-	benign(0.071)	tolerated(0.07)	neutral(0.324)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
MUC4	4585	genome.wustl.edu	37	3	195517748	195517748	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018406.5	-1	reviewed	p.V235I	0.000	157	0%	253	37.2%	-	-	benign(0.382)	tolerated(0.19)	neutral(0.171)	NULL
KIAA1211	57482	genome.wustl.edu	37	4	57180353	57180353	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020722.1	+1	validated	p.R229*	1.000	23	0%	38	18.4%	-	-	-	-	-	NULL
ANTXR2	118429	genome.wustl.edu	37	4	80990624	80990624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145794.1	-1	reviewed	p.Q88K	1.000	50	0%	72	22.2%	-	-	possibly_damaging(0.93)	tolerated(0.38)	neutral(0.394)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
TBC1D9	23158	genome.wustl.edu	37	4	141607579	141607579	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015130.2	-1	validated	p.W93C	1.000	110	0%	73	83.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FRG1	2483	genome.wustl.edu	37	4	190873437	190873439	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004477.2	+1	reviewed	p.E86in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Actin-crosslinking proteins,HMMPfam_FRG1
BRIX1	55299	genome.wustl.edu	37	5	34925519	34925519	+	Silent	SNP	T	T	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018321.3	+1	validated	p.V327	0.005	30	0%	73	32.9%	-	-	-	-	-	NULL
FGFR4	2264	genome.wustl.edu	37	5	176517941	176517941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002011.3	+1	reviewed	p.P147S	1.000	25	0%	38	44.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Immunoglobulin
SYCP2L	221711	genome.wustl.edu	37	6	10961744	10961744	+	Silent	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001040274.2	+1	validated	p.G789	0.430	86	0%	124	48.4%	-	-	-	-	-	NULL
CDSN	1041	genome.wustl.edu	37	6	31084943	31084945	+	In_Frame_Del	DEL	CTT	CTT	-	rs140128746	byCluster;by1000genomes	TCGA-EY-A212-01	TCGA-EY-A212-01	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001264.3	-1	reviewed	p.S153in_frame_del	0.093:0.082:0.059	-	-	-	-	-	-	-	-	-	NULL
ABHD16A	7920	genome.wustl.edu	37	6	31660901	31660901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021160.2	-1	reviewed	p.R177C	0.948	17	0%	27	48.1%	-	-	benign(0)	tolerated(0.22)	neutral(0.042)	NULL
ETV7	51513	genome.wustl.edu	37	6	36339110	36339110	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016135.2	-1	provisional	p.A221P	0.833	14	0%	21	42.9%	-	-	benign(0.024)	tolerated(0.08)	neutral(0.301)	"superfamily_""Winged helix"" DNA-binding domain"
EYS	346007	genome.wustl.edu	37	6	65149235	65149235	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142800.1	-1	reviewed	p.C1885*	0.022	24	0%	33	42.4%	-	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
MANEA	79694	genome.wustl.edu	37	6	96034881	96034882	+	Frame_Shift_Ins	INS	-	-	TATG	rs78175628		TCGA-EY-A212-01	TCGA-EY-A212-01	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000369293	+1	known	p.V190fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
NOX3	50508	genome.wustl.edu	37	6	155728362	155728362	+	Silent	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015718.2	-1	reviewed	p.D494	0.998	99	0%	131	15.3%	-	-	-	-	-	HMMPfam_NAD_binding_6,superfamily_SSF52343
MAD1L1	8379	genome.wustl.edu	37	7	1938014	1938014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013836.1	-1	reviewed	p.Q607R	1.000	58	0%	83	21.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_MAD
ENSG00000245043	0	genome.wustl.edu	37	7	64534207	64534208	+	RNA	DEL	TG	TG	-	rs147092229		TCGA-EY-A212-01	TCGA-EY-A212-01	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000501153	-1	known	NULL	1.000:1.000	-	-	-	-	-	-	-	-	-	-
PPP1R3A	5506	genome.wustl.edu	37	7	113519095	113519095	+	Silent	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002711.3	-1	reviewed	p.D684	0.157	92	0%	98	40.8%	-	-	-	-	-	NULL
UNC5D	137970	genome.wustl.edu	37	8	35579805	35579805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080872.2	+1	validated	p.G399C	1.000	103	1%	79	79.7%	-	-	probably_damaging(0.987)	deleterious(0.03)	deleterious(0.801)	NULL
TGS1	96764	genome.wustl.edu	37	8	56725612	56725612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024831.6	+1	validated	p.R792G	1.000	67	1.5%	91	45.1%	-	-	-	-	-	HMMPfam_Methyltransf_15
ZFHX4	79776	genome.wustl.edu	37	8	77616659	77616659	+	Silent	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.N112	1.000	42	0%	77	36.4%	-	-	-	-	-	NULL
PKN3	29941	genome.wustl.edu	37	9	131480644	131480644	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013355.3	+1	validated	p.H676fs	1.000	-	-	-	-	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
DCLRE1C	64421	genome.wustl.edu	37	10	14950819	14950819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001033855.1	-1	reviewed	p.D556G	0.997	73	0%	99	42.4%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
NRP1	8829	genome.wustl.edu	37	10	33510750	33510750	+	Silent	SNP	T	T	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003873.5	-1	validated	p.A393	0.925	97	0%	109	51.4%	-	-	-	-	-	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,superfamily_Galactose-binding domain-like
RPL27A	6157	genome.wustl.edu	37	11	8706403	8706403	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000990.4	+1	reviewed	p.K94N	0.774	98	0%	86	52.3%	-	-	benign(0.215)	tolerated(0.16)	neutral(0.081)	superfamily_Ribosomal proteins L15p and L18e
PAMR1	25891	genome.wustl.edu	37	11	35457472	35457472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015430.2	-1	validated	p.R455W	1.000	23	0%	38	50%	-	-	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
SPTBN2	6712	genome.wustl.edu	37	11	66453553	66453553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006946.2	-1	reviewed	p.R2321Q	1.000	8	0.000	19	0.211	-	-	benign(0.103)	tolerated(1)	neutral(0.008)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
KRAS	3845	genome.wustl.edu	37	12	25398250	25398250	+	Silent	SNP	T	T	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033360.2	-1	reviewed	p.L23	1.000	44	0%	81	55.6%	-	-	-	-	-	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
SCN8A	6334	genome.wustl.edu	37	12	52167974	52167974	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014191.2	+1	reviewed	p.A1216V	1.000	55	0%	56	46.4%	-	-	benign(0.036)	deleterious(0)	neutral(0.447)	superfamily_Voltage-gated potassium channels
PLXNC1	10154	genome.wustl.edu	37	12	94543466	94543466	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005761.1	+1	provisional	p.W240*	1.000	13	0%	16	25%	-	-	-	-	-	superfamily_Sema
ANKS1B	56899	genome.wustl.edu	37	12	99201692	99201692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181670.2	-1	validated	p.S249L	1.000	63	0%	69	37.7%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
ULK3	25989	genome.wustl.edu	37	15	75134689	75134689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099436.1	-1	validated	p.L59V	1.000	102	0%	99	11.1%	-	-	benign(0.393)	tolerated(0.06)	neutral(0.449)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DNAJA4	55466	genome.wustl.edu	37	15	78568052	78568052	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018602.3	+1	validated	p.V316I	0.064	94	0%	83	72.3%	-	-	benign(0.001)	tolerated(0.29)	neutral(0.029)	HMMPfam_DnaJ_C,superfamily_HSP40_DnaJ_pep
EFTUD1	79631	genome.wustl.edu	37	15	82444189	82444189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024580.5	-1	validated	p.I869T	1.000	37	0%	57	10.5%	-	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	HMMPfam_EFG_IV,superfamily_Ribosomal protein S5 domain 2-like
SV2B	9899	genome.wustl.edu	37	15	91795210	91795210	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014848.4	+1	validated	p.R205*	1.000	36	0%	68	19.1%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ITFG1	81533	genome.wustl.edu	37	16	47485371	47485371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030790.3	-1	provisional	p.D166N	1.000	86	0%	79	22.8%	-	-	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	superfamily_SSF69318
TP53	7157	genome.wustl.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.V173L	0.996	18	0%	25	80%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_p53-like transcription factors,HMMPfam_P53
CNTROB	116840	genome.wustl.edu	37	17	7840526	7840526	+	Silent	SNP	C	C	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000380262	+1	known	p.A291	1.000	29	0%	35	60%	-	-	-	-	-	NULL
ENSG00000232457	0	genome.wustl.edu	37	17	62950262	62950262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000413214	+1	known	p.I7M	0.008	31	0%	93	96.8%	-	-	possibly_damaging(0.437)	tolerated(0.1)	neutral(0.429)	superfamily_MFS general substrate transporter
SLC25A10	1468	genome.wustl.edu	37	17	79682051	79682051	+	Silent	SNP	C	C	T	rs3204270	byCluster;byFrequency;by1000genomes	TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012140.3	+1	provisional	p.T54	0.000	11	18.2%	15	100%	-	-	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
SLC14A1	6563	genome.wustl.edu	37	18	43329802	43329802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128588.3	+1	reviewed	p.M408I	1.000	60	0%	115	51.3%	-	-	benign(0.003)	tolerated(0.27)	neutral(0.034)	HMMPfam_UT
C19orf26	255057	genome.wustl.edu	37	19	1236002	1236002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152769.2	-1	validated	p.R27H	0.069	25	0%	12	50%	-	-	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
ACSBG2	81616	genome.wustl.edu	37	19	6183087	6183087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030924.3	+1	validated	p.T376A	0.001	25	0%	16	56.2%	-	-	benign(0.001)	tolerated(0.87)	neutral(0.001)	HMMPfam_AMP-binding,superfamily_SSF56801
ZNF30	90075	genome.wustl.edu	37	19	35422781	35422781	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001099437.1	+1	validated	p.T15K	0.933	59	0%	103	43.7%	-	-	possibly_damaging(0.605)	deleterious(0.04)	deleterious(0.558)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
LOC100289396	100289396	genome.wustl.edu	37	19	39308073	39308073	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343679.1	+1	model	p.Q86fs	0.034	-	-	-	-	-	-	-	-	-	NULL
CKM	1158	genome.wustl.edu	37	19	45810883	45810883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001824.2	-1	reviewed	p.G268D	1.000	34	0%	41	43.9%	-	-	benign(0.054)	deleterious(0.03)	neutral(0.368)	HMMPfam_ATP-gua_Ptrans,superfamily_SSF55931
ERCC2	2068	genome.wustl.edu	37	19	45868137	45868137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000400.3	-1	reviewed	p.R185W	0.909	17	0%	43	37.2%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_DEXDc2,HMMPfam_DEAD_2,superfamily_SSF52540
PPP2R1A	5518	genome.wustl.edu	37	19	52715971	52715971	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014225.5	+1	reviewed	p.P179R	1.000	24	0%	18	33.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HEAT,superfamily_ARM repeat
SLC12A5	57468	genome.wustl.edu	37	20	44671940	44671940	+	Silent	SNP	C	C	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134771.1	+1	reviewed	p.G428	1.000	38	0%	52	73.1%	-	-	-	-	-	HMMPfam_AA_permease
RRP1B	23076	genome.wustl.edu	37	21	45111378	45111378	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015056.2	+1	validated	p.T693N	0.999	45	0%	75	64%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RANBP1	5902	genome.wustl.edu	37	22	20106594	20106594	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002882.2	+1	reviewed	p.P25R	1.000	41	0%	47	21.3%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_SSF50729
PATZ1	23598	genome.wustl.edu	37	22	31723094	31723094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014323.2	-1	reviewed	p.S616C	1.000	44	0%	94	26.6%	-	-	benign(0.132)	tolerated(0.17)	neutral(0.070)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PATZ1	23598	genome.wustl.edu	37	22	31740598	31740598	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014323.2	-1	reviewed	p.L331V	0.680	14	0%	39	38.5%	-	-	possibly_damaging(0.466)	tolerated(0.11)	neutral(0.424)	NULL
ENSG00000198888	0	genome.wustl.edu	37	MT	3882	3882	+	Silent	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000361390	+1	known	p.E192	NULL	122	0%	175	98.3%	-	-	-	-	-	HMMPfam_NADHdh
GLRA2	2742	genome.wustl.edu	37	X	14625253	14625253	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001118885.1	+1	reviewed	p.F193C	1.000	100	0%	139	30.9%	-	-	possibly_damaging(0.713)	deleterious(0)	deleterious(0.702)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
DMD	1756	genome.wustl.edu	37	X	32328242	32328242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004006.2	-1	reviewed	p.A2025V	1.000	51	0%	79	10.1%	-	-	benign(0.273)	tolerated(0.25)	neutral(0.066)	HMMPfam_Spectrin,HMMSmart_SM00150
APOOL	139322	genome.wustl.edu	37	X	84309354	84309354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EY-A212-01	TCGA-EY-A212-01	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198450.4	+1	validated	p.V82A	0.025	297	0%	371	15.9%	-	-	benign(0.001)	tolerated(0.54)	neutral(0.007)	HMMPfam_ApoO
