writing sdrf to BLCA.merger.sdrf.txt

------------------------------------------------------------------
2012-07-02 17:17:09.907060
. ['/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_interactive/Axis2530124861203301763.att_dependentsValues8010187088526149446.tsv']

Make a softlink......

Flag: True.
Processing input file to make a softlink...: /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/temp/attachments/cgaadm_interactive/Axis2530124861203301763.att_dependentsValues8010187088526149446.tsv

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BL-A0C8-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BL-A13I-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BL-A13J-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A0S7-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A0YX-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A20J-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A20N-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A20O-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A20P-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A20Q-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A20T-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A20U-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A20V-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-BT-A20W-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-C4-A0EZ-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-C4-A0F0-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-C4-A0F1-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-C4-A0F6-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-C4-A0F7-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-CF-A1HR-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-CF-A1HS-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-CU-A0YN-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-CU-A0YO-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-CU-A0YR-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DK-A1A3-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DK-A1A5-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DK-A1A7-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-DK-A1AB-01.wig.txt
('', None)
0
4f5937f26c49e73a0735a6a15da1ed36
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt
Make a softlink is done.


