| GDAC_CreateMergeDataFilesSDRF1 samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.KIRC.2012_06_06__00_00_18.samplestamp.txt |
| GDAC_CreateMergeDataFilesSDRF1 annotationid | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg |
| GDAC_CreateMergeDataFilesSDRF1 datapathsfile | dependentsValues4631649420274037328.tsv |
| GDAC_MergeDataFiles2 inputfilelist filename | dependentsValues2562189937585489330.tsv |
| GDAC_MergeDataFiles2 output filename | KIRC |
| GDAC_MergeDataFiles2 row_column | row |
| GDAC_MergeDataFiles2 num_headers | 1 |
| GDAC_MergeDataFiles2 filetype | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg |
| Execution Times: | |
| Submitted: | 23:22:00 13-06-12 |
| Completed: | |
| Elapsed: | 00 hrs 01 mins 47 secs |
step 1. GDAC_CreateMergeDataFilesSDRF [id: 112222] This module parses a samplestamp based on an input annotation id and creates an SDRF file as output.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00467:9
| samplestamp | file:/xchip/gdac_data/normalized/loadfiles/normalized/normalized.KIRC.2012_06_06__00_00_18.samplestamp.txt |
| annotationid | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg |
| sdrffilename | |
| datapathsfile | dependentsValues4631649420274037328.tsv |
| Output Files: | |
| KIRC.merger.sdrf.txt | |
| dcc_archive.properties | |
| dcc_archive_manifest.tsv | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 23:22:01 13-06-12 |
| Completed: | 23:23:01 13-06-12 |
| Elapsed: | 00 hrs 01 mins 00 secs |
step 2. GDAC_MergeDataFiles [id: 112223] Merges row or column oriented text datatable files, validating that the headers match.
urn:lsid:broadinstitute.org:cancer.genome.analysis:00140:3
| inputfilelist filename | dependentsValues2562189937585489330.tsv |
| output filename | KIRC |
| row_column | row |
| num_headers | 1 |
| filetype | snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg |
| Output Files: | |
| KIRC.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg.seg.txt | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 23:22:01 13-06-12 |
| Completed: | 23:23:41 13-06-12 |
| Elapsed: | 00 hrs 01 mins 40 secs |