Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AAAS	8086	broad.mit.edu	37	12	53708136	53708136	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150554284	150554284	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKS4B	257629	broad.mit.edu	37	16	21261382	21261382	+	Nonsense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128839969	128839969	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BACH1	571	broad.mit.edu	37	21	30714928	30714928	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11412944	11412944	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49690033	49690033	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BTF3L4	91408	broad.mit.edu	37	1	52552415	52552415	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C11orf63	79864	broad.mit.edu	37	11	122805156	122805156	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45949808	45949808	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53845230	53845230	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNG4	27092	broad.mit.edu	37	17	65021007	65021007	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35827039	35827039	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24491776	24491776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHST4	10164	broad.mit.edu	37	16	71570851	71570851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNTNAP1	8506	broad.mit.edu	37	17	40836243	40836243	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228176506	228176506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56099123	56099123	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYTSB	92521	broad.mit.edu	37	17	20108270	20108270	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DBNDD1	79007	broad.mit.edu	37	16	90072891	90072891	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCST2	127579	broad.mit.edu	37	1	154995893	154995893	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139190851	139190851	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150945790	150945790	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157718409	157718409	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155721637	155721637	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27497454	27497454	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSPA8	3312	broad.mit.edu	37	11	122930668	122930668	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15170770	15170770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137708520	137708520	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KPNA1	3836	broad.mit.edu	37	3	122160886	122160886	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6966196	6966196	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAST3	23031	broad.mit.edu	37	19	18234143	18234143	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ME1	4199	broad.mit.edu	37	6	83963360	83963360	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ME2	4200	broad.mit.edu	37	18	48439249	48439249	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MIR1293	100302220	broad.mit.edu	37	12	50627995	50627995	+	miRNA	DEL	T	-	-	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MKS1	54903	broad.mit.edu	37	17	56285343	56285343	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59837676	59837676	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108205348	108205348	+	Silent	SNP	G	C	C	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16763764	16763764	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAT15	79903	broad.mit.edu	37	16	3533548	3533549	+	Missense_Mutation	DNP	TT	CA	CA	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	TT	TT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NGLY1	55768	broad.mit.edu	37	3	25824816	25824816	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133062109	133062109	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176659299	176659299	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52597379	52597379	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56138150	56138150	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74336686	74336686	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RDH13	112724	broad.mit.edu	37	19	55570644	55570644	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMCR8	140775	broad.mit.edu	37	17	18219186	18219186	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29843732	29843732	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TBCC	6903	broad.mit.edu	37	6	42713803	42713803	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM181	57583	broad.mit.edu	37	6	159029391	159029391	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15405181	15405181	+	Frame_Shift_Del	DEL	A	-	-	rs76463825	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142572835	142572835	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179593688	179593688	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19505691	19505691	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10191475	10191475	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32421532	32421532	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFP91	80829	broad.mit.edu	37	11	58384897	58384897	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF425	155054	broad.mit.edu	37	7	148801994	148801994	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF773	374928	broad.mit.edu	37	19	58018037	58018037	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3326-01	TCGA-A3-3326-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
