Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACSL5	51703	hgsc.bcm.edu	37	10	114164332	114164332	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ADAMTS12	81792	hgsc.bcm.edu	37	5	33683970	33683970	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARPC2	10109	hgsc.bcm.edu	37	2	219093573	219093573	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP5A1	498	hgsc.bcm.edu	37	18	43668204	43668204	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BEST1	7439	hgsc.bcm.edu	37	11	61730491	61730491	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHRNA2	1135	hgsc.bcm.edu	37	8	27321118	27321118	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CRISPLD1	83690	hgsc.bcm.edu	37	8	75927084	75927084	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CYP4B1	1580	hgsc.bcm.edu	37	1	47279221	47279221	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DCAF6	55827	hgsc.bcm.edu	37	1	168034953	168034953	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EPS8L1	54869	hgsc.bcm.edu	37	19	55597327	55597327	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IQCG	84223	hgsc.bcm.edu	37	3	197652965	197652965	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNJ12	3768	hgsc.bcm.edu	37	17	21318948	21318948	+	Silent	SNP	C	C	T	rs112314728	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MSX2	4488	hgsc.bcm.edu	37	5	174156377	174156377	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195512373	195512374	+	In_Frame_Ins	INS	-	-	GAT	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195513474	195513474	+	Silent	SNP	T	T	G	rs77382269	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NRXN1	9378	hgsc.bcm.edu	37	2	50723141	50723141	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PMS2	5395	hgsc.bcm.edu	37	7	6042192	6042192	+	Silent	SNP	A	A	G	rs35650314	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRR20C	729240	hgsc.bcm.edu	37	13	57729807	57729807	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRR20C	729240	hgsc.bcm.edu	37	13	57736378	57736378	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RGL4	266747	hgsc.bcm.edu	37	22	24034361	24034361	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SIRPG	55423	hgsc.bcm.edu	37	20	1616066	1616066	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYT12	91683	hgsc.bcm.edu	37	11	66807536	66807536	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
THADA	63892	hgsc.bcm.edu	37	2	43801938	43801938	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRAPPC10	7109	hgsc.bcm.edu	37	21	45511882	45511882	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRIM21	6737	hgsc.bcm.edu	37	11	4411299	4411299	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBE3B	89910	hgsc.bcm.edu	37	12	109927773	109927773	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZFHX3	463	hgsc.bcm.edu	37	16	72829790	72829790	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A3-3349-01A-01D-1251-10	TCGA-A3-3349-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
