Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANKIB1	54467	broad.mit.edu	37	7	92027912	92027912	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31595623	31595623	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C14orf39	317761	broad.mit.edu	37	14	60928115	60928116	+	Missense_Mutation	DNP	CT	TC	TC	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf162	128346	broad.mit.edu	37	1	112019442	112019442	+	Silent	SNP	A	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf189	388701	broad.mit.edu	37	1	154178091	154178091	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf65	164127	broad.mit.edu	37	1	223568605	223568605	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC3	83643	broad.mit.edu	37	10	12940511	12940511	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17073177	17073177	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDC16	8881	broad.mit.edu	37	13	115004884	115004884	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYLD	1540	broad.mit.edu	37	16	50783997	50783997	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DENND4A	10260	broad.mit.edu	37	15	65983198	65983198	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	406989	406989	+	Silent	SNP	T	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOPEY1	23033	broad.mit.edu	37	6	83823121	83823121	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DYRK1A	1859	broad.mit.edu	37	21	38845082	38845082	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DYRK1A	1859	broad.mit.edu	37	21	38862648	38862648	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
E2F5	1875	broad.mit.edu	37	8	86119690	86119690	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPC2	26122	broad.mit.edu	37	2	149501326	149501326	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38227126	38227126	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93969181	93969181	+	Silent	SNP	G	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM76B	143684	broad.mit.edu	37	11	95512032	95512032	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM96B	51647	broad.mit.edu	37	16	66966160	66966160	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HBE1	3046	broad.mit.edu	37	11	5291073	5291073	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIAT1	64645	broad.mit.edu	37	1	100546150	100546150	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73488654	73488654	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43535045	43535045	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLF10	7071	broad.mit.edu	37	8	103663602	103663602	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LEPREL1	55214	broad.mit.edu	37	3	189689771	189689771	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LMTK2	22853	broad.mit.edu	37	7	97822827	97822827	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LSM1	27257	broad.mit.edu	37	8	38029515	38029515	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151873357	151873357	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLL5	55904	broad.mit.edu	37	7	104749515	104749515	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MMP12	4321	broad.mit.edu	37	11	102738795	102738796	+	Frame_Shift_Ins	INS	-	T	T	rs68192523	by1000genomes	TCGA-A3-3376-01	TCGA-A3-3376-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72400804	72400804	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUP85	79902	broad.mit.edu	37	17	73204674	73204674	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228504428	228504428	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PIK3R1	5295	broad.mit.edu	37	5	67590479	67590479	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLA2G16	11145	broad.mit.edu	37	11	63342504	63342504	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPP2R5B	5526	broad.mit.edu	37	11	64695788	64695788	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48166241	48166241	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
QRSL1	55278	broad.mit.edu	37	6	107088233	107088233	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173879257	173879257	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SDHB	6390	broad.mit.edu	37	1	17350478	17350478	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SFXN2	118980	broad.mit.edu	37	10	104489089	104489089	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC25A25	114789	broad.mit.edu	37	9	130868093	130868093	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20629130	20629130	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SOAT2	8435	broad.mit.edu	37	12	53512684	53512685	+	Missense_Mutation	DNP	GT	TG	TG	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	GT	GT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108366996	108366996	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16257104	16257104	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPIB	6689	broad.mit.edu	37	19	50926246	50926246	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STIL	6491	broad.mit.edu	37	1	47767917	47767917	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STMN3	50861	broad.mit.edu	37	20	62275107	62275107	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104464656	104464656	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5347894	5347894	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42680130	42680130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43317589	43317589	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183872	10183872	+	Splice_Site	SNP	G	C	C	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
YTHDC2	64848	broad.mit.edu	37	5	112870044	112870044	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF510	22869	broad.mit.edu	37	9	99538291	99538291	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3376-01	TCGA-A3-3376-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
