Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACLY	47	broad.mit.edu	37	17	40028034	40028034	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101095127	101095127	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117228696	117228696	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
B4GALNT4	338707	broad.mit.edu	37	11	375649	375649	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40505655	40505655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33140387	33140387	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10116808	10116808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4412076	4412076	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSTF3	1479	broad.mit.edu	37	11	33123767	33123767	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTPS	1503	broad.mit.edu	37	1	41471734	41471734	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAJB12	54788	broad.mit.edu	37	10	74100574	74100574	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111555908	111555908	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FCAR	2204	broad.mit.edu	37	19	55399613	55399613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25887796	25887796	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10101473	10101473	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87966299	87966299	+	Silent	SNP	G	C	C	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRPEL1	80273	broad.mit.edu	37	4	7062876	7062876	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IGLL1	3543	broad.mit.edu	37	22	23917235	23917235	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26848561	26848562	+	Missense_Mutation	DNP	GC	CT	CT	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LDLR	3949	broad.mit.edu	37	19	11224382	11224382	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAEA	10296	broad.mit.edu	37	4	1305934	1305934	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10442759	10442759	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCAPH2	29781	broad.mit.edu	37	22	50954874	50954874	+	Splice_Site	SNP	A	C	C	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUP153	9972	broad.mit.edu	37	6	17662260	17662260	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135307659	135307659	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52702569	52702569	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCF11	51585	broad.mit.edu	37	11	82877725	82877725	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDZD3	79849	broad.mit.edu	37	11	119059779	119059779	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PITX2	5308	broad.mit.edu	37	4	111539589	111539589	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POM121C	100101267	broad.mit.edu	37	7	75054987	75054987	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPM1B	5495	broad.mit.edu	37	2	44457623	44457623	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTGES	9536	broad.mit.edu	37	9	132502051	132502051	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24564874	24564874	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RBM43	375287	broad.mit.edu	37	2	152112099	152112099	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RHOBTB1	9886	broad.mit.edu	37	10	62670706	62670706	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68897205	68897206	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47162162	47162162	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SHROOM2	357	broad.mit.edu	37	X	9914789	9914789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38573642	38573642	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20599967	20599967	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STYK1	55359	broad.mit.edu	37	12	10783738	10783738	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	8006092	8006092	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM214	54867	broad.mit.edu	37	2	27256957	27256957	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIM3	10612	broad.mit.edu	37	11	6479378	6479378	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIM33	51592	broad.mit.edu	37	1	114967253	114967253	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UXS1	80146	broad.mit.edu	37	2	106717553	106717553	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10191488	10191488	+	Nonsense_Mutation	SNP	C	T	T	rs5030818	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR46	9277	broad.mit.edu	37	6	33254931	33254931	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR66	144406	broad.mit.edu	37	12	122369710	122369710	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR83	84292	broad.mit.edu	37	19	12783897	12783897	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF646	9726	broad.mit.edu	37	16	31089750	31089751	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-A3-3383-01	TCGA-A3-3383-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
