Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
BCO2	83875	hgsc.bcm.edu	37	11	112072899	112072899	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BHLHB9	80823	hgsc.bcm.edu	37	X	102004560	102004560	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C1orf173	127254	hgsc.bcm.edu	37	1	75038280	75038280	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C20orf94	128710	hgsc.bcm.edu	37	20	10603312	10603312	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C5orf42	65250	hgsc.bcm.edu	37	5	37168941	37168941	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC8	83987	hgsc.bcm.edu	37	19	46914688	46914688	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CD180	4064	hgsc.bcm.edu	37	5	66479407	66479407	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDHR1	92211	hgsc.bcm.edu	37	10	85960393	85960393	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHD7	55636	hgsc.bcm.edu	37	8	61763106	61763106	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CNTNAP2	26047	hgsc.bcm.edu	37	7	147336210	147336210	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DHX15	1665	hgsc.bcm.edu	37	4	24572443	24572443	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DHX15	1665	hgsc.bcm.edu	37	4	24572444	24572444	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAH9	1770	hgsc.bcm.edu	37	17	11701016	11701016	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DRD5	1816	hgsc.bcm.edu	37	4	9784617	9784617	+	Missense_Mutation	SNP	T	T	C	rs112029473	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EGF	1950	hgsc.bcm.edu	37	4	110909739	110909739	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EGFL6	25975	hgsc.bcm.edu	37	X	13636139	13636139	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EXOC6	54536	hgsc.bcm.edu	37	10	94669364	94669364	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBN1	2200	hgsc.bcm.edu	37	15	48764807	48764807	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FREM2	341640	hgsc.bcm.edu	37	13	39452971	39452971	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GAB4	128954	hgsc.bcm.edu	37	22	17472966	17472966	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HAP1	9001	hgsc.bcm.edu	37	17	39889026	39889026	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HEXA	3073	hgsc.bcm.edu	37	15	72643495	72643495	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HYOU1	10525	hgsc.bcm.edu	37	11	118916498	118916498	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IL6	3569	hgsc.bcm.edu	37	7	22771126	22771126	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITGB6	3694	hgsc.bcm.edu	37	2	160983104	160983104	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JMY	133746	hgsc.bcm.edu	37	5	78573870	78573870	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM5C	8242	hgsc.bcm.edu	37	X	53223899	53223899	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM5C	8242	hgsc.bcm.edu	37	X	53223903	53223903	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM5C	8242	hgsc.bcm.edu	37	X	53223905	53223905	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF22	3835	hgsc.bcm.edu	37	16	29810383	29810383	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRAS	3845	hgsc.bcm.edu	37	12	25398264	25398264	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LHFPL4	375323	hgsc.bcm.edu	37	3	9547725	9547725	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LONP1	9361	hgsc.bcm.edu	37	19	5699170	5699170	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LONRF1	91694	hgsc.bcm.edu	37	8	12592860	12592860	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRP4	4038	hgsc.bcm.edu	37	11	46898361	46898361	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MLL2	8085	hgsc.bcm.edu	37	12	49444844	49444844	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MSR1	4481	hgsc.bcm.edu	37	8	15977930	15977930	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MTMR4	9110	hgsc.bcm.edu	37	17	56581545	56581546	+	Frame_Shift_Ins	INS	-	-	GT	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NBPF1	55672	hgsc.bcm.edu	37	1	16913638	16913638	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR10G4	390264	hgsc.bcm.edu	37	11	123886795	123886795	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52702551	52702551	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDE1B	5153	hgsc.bcm.edu	37	12	54967242	54967242	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDE1C	5137	hgsc.bcm.edu	37	7	31855749	31855749	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
POLD3	10714	hgsc.bcm.edu	37	11	74340306	74340306	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPARGC1B	133522	hgsc.bcm.edu	37	5	149212567	149212567	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRKD1	5587	hgsc.bcm.edu	37	14	30132916	30132916	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPN12	5782	hgsc.bcm.edu	37	7	77256021	77256021	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPRC	5788	hgsc.bcm.edu	37	1	198723495	198723495	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAB11FIP4	84440	hgsc.bcm.edu	37	17	29857420	29857420	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAB39B	116442	hgsc.bcm.edu	37	X	154490261	154490261	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RASEF	158158	hgsc.bcm.edu	37	9	85620394	85620394	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RASSF9	9182	hgsc.bcm.edu	37	12	86199472	86199472	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ROBLD3	28956	hgsc.bcm.edu	37	1	156025137	156025137	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RPGRIP1	57096	hgsc.bcm.edu	37	14	21793467	21793467	+	Silent	SNP	G	G	A	rs35207255	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RYR2	6262	hgsc.bcm.edu	37	1	237806695	237806695	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SGIP1	84251	hgsc.bcm.edu	37	1	67147913	67147913	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SGSM1	129049	hgsc.bcm.edu	37	22	25282686	25282686	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SHROOM1	134549	hgsc.bcm.edu	37	5	132160424	132160424	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC17A3	10786	hgsc.bcm.edu	37	6	25850134	25850134	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLCO2B1	11309	hgsc.bcm.edu	37	11	74876867	74876867	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STON2	85439	hgsc.bcm.edu	37	14	81736986	81736986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STON2	85439	hgsc.bcm.edu	37	14	81736987	81736987	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYBU	55638	hgsc.bcm.edu	37	8	110587762	110587762	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TDRD5	163589	hgsc.bcm.edu	37	1	179620176	179620176	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMPRSS15	5651	hgsc.bcm.edu	37	21	19725219	19725219	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TPP2	7174	hgsc.bcm.edu	37	13	103275378	103275378	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBLCP1	134510	hgsc.bcm.edu	37	5	158710292	158710292	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBR4	23352	hgsc.bcm.edu	37	1	19499967	19499967	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UCHL1	7345	hgsc.bcm.edu	37	4	41259002	41259002	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UPK3A	7380	hgsc.bcm.edu	37	22	45691552	45691553	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP34	9736	hgsc.bcm.edu	37	2	61493279	61493279	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDR77	79084	hgsc.bcm.edu	37	1	111990200	111990200	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZFP91	80829	hgsc.bcm.edu	37	11	58381764	58381764	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZMYND11	10771	hgsc.bcm.edu	37	10	225962	225962	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF2	7549	hgsc.bcm.edu	37	2	95847047	95847047	+	Silent	SNP	G	G	A	rs112887855	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF343	79175	hgsc.bcm.edu	37	20	2464292	2464292	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF548	147694	hgsc.bcm.edu	37	19	57910589	57910590	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AK-3430-01A-01D-1251-10	TCGA-AK-3430-10A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
