Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ALOXE3	59344	broad.mit.edu	37	17	8021249	8021249	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AQP4	361	broad.mit.edu	37	18	24436385	24436385	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGAP26	23092	broad.mit.edu	37	5	142526819	142526819	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157528622	157528622	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120765873	120765873	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAMK2G	818	broad.mit.edu	37	10	75612974	75612974	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76891575	76891575	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19747190	19747190	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101891738	101891738	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31327871	31327871	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DMGDH	29958	broad.mit.edu	37	5	78350168	78350168	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225637922	225637922	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111509659	111509659	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM58B	339521	broad.mit.edu	37	1	200183197	200183197	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FCN1	2219	broad.mit.edu	37	9	137805435	137805435	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240371016	240371016	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FPGT	8790	broad.mit.edu	37	1	74670342	74670342	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27193284	27193284	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IP6K3	117283	broad.mit.edu	37	6	33693343	33693343	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNJ2	3759	broad.mit.edu	37	17	68171679	68171679	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCNQ1	3784	broad.mit.edu	37	11	2606466	2606466	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8871251	8871251	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRT1	3848	broad.mit.edu	37	12	53069236	53069256	+	In_Frame_Del	DEL	TAGCTGCTACCTCCGGAGCCA	-	-	rs77846840;rs61226348	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	TAGCTGCTACCTCCGGAGCCA	TAGCTGCTACCTCCGGAGCCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LHFPL1	340596	broad.mit.edu	37	X	111914413	111914413	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46916747	46916747	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAGEB16	139604	broad.mit.edu	37	X	35820494	35820494	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAN2C1	4123	broad.mit.edu	37	15	75655087	75655087	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MFSD6L	162387	broad.mit.edu	37	17	8701942	8701942	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTRF1L	54516	broad.mit.edu	37	6	153323724	153323724	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9064631	9064631	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108117669	108117669	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NASP	4678	broad.mit.edu	37	1	46073828	46073828	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NFKBIZ	64332	broad.mit.edu	37	3	101570960	101570960	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56473595	56473595	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OGFR	11054	broad.mit.edu	37	20	61444100	61444100	+	Missense_Mutation	SNP	G	T	T	rs6122312	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122447427	122447427	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDK1	5163	broad.mit.edu	37	2	173435508	173435508	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHF17	79960	broad.mit.edu	37	4	129782923	129782923	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242428747	242428747	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17698328	17698328	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPS6KC1	26750	broad.mit.edu	37	1	213302912	213302912	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RTN3	10313	broad.mit.edu	37	11	63487838	63487838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47143014	47143014	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164767593	164767593	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLITRK6	84189	broad.mit.edu	37	13	86368512	86368512	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMARCB1	6598	broad.mit.edu	37	22	24175874	24175874	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNED1	25992	broad.mit.edu	37	2	241989270	241989270	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPATS2L	26010	broad.mit.edu	37	2	201304031	201304031	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TAAR5	9038	broad.mit.edu	37	6	132910010	132910010	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TBL1XR1	79718	broad.mit.edu	37	3	176767807	176767807	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56638955	56638955	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43571460	43571460	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSLP	85480	broad.mit.edu	37	5	110407687	110407687	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UHRF1BP1	54887	broad.mit.edu	37	6	34826414	34826414	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188204	10188204	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS39	23339	broad.mit.edu	37	15	42479524	42479524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77616514	77616514	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFP37	7539	broad.mit.edu	37	9	115806234	115806234	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106801068	106801068	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF646	9726	broad.mit.edu	37	16	31094339	31094339	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88963296	88963296	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AK-3455-01	TCGA-AK-3455-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
