Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACE	1636	hgsc.bcm.edu	37	17	61557828	61557828	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ADAM18	8749	hgsc.bcm.edu	37	8	39537679	39537679	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AKR1C1	1645	hgsc.bcm.edu	37	10	5009193	5009193	+	Silent	SNP	T	T	C	rs11548049	unknown	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ASPN	54829	hgsc.bcm.edu	37	9	95233022	95233022	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATF7	11016	hgsc.bcm.edu	37	12	53937186	53937186	+	Silent	SNP	C	C	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAZ1A	11177	hgsc.bcm.edu	37	14	35245523	35245523	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BHLHE41	79365	hgsc.bcm.edu	37	12	26277067	26277067	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C18orf55	29090	hgsc.bcm.edu	37	18	71825486	71825486	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CENPJ	55835	hgsc.bcm.edu	37	13	25457359	25457359	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CENPJ	55835	hgsc.bcm.edu	37	13	25486101	25486101	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHRNA6	8973	hgsc.bcm.edu	37	8	42611131	42611131	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CIAO1	9391	hgsc.bcm.edu	37	2	96933644	96933644	+	Silent	SNP	T	T	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DCP1A	55802	hgsc.bcm.edu	37	3	53326738	53326738	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DDX27	55661	hgsc.bcm.edu	37	20	47835898	47835898	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DDX4	54514	hgsc.bcm.edu	37	5	55109576	55109576	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM26E	254228	hgsc.bcm.edu	37	6	116833204	116833204	+	Silent	SNP	T	T	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM57A	79850	hgsc.bcm.edu	37	17	641269	641269	+	Silent	SNP	C	C	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FBXO40	51725	hgsc.bcm.edu	37	3	121340509	121340509	+	Missense_Mutation	SNP	G	G	A	rs78367832	unknown	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FER1L5	90342	hgsc.bcm.edu	37	2	97366098	97366098	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FRMPD4	9758	hgsc.bcm.edu	37	X	12736245	12736245	+	Silent	SNP	G	G	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GALNT7	51809	hgsc.bcm.edu	37	4	174219388	174219388	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GNAI2	2771	hgsc.bcm.edu	37	3	50295032	50295032	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GON4L	54856	hgsc.bcm.edu	37	1	155735259	155735259	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPATCH8	23131	hgsc.bcm.edu	37	17	42475564	42475564	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GPR31	2853	hgsc.bcm.edu	37	6	167570628	167570628	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GTF2H2	2966	hgsc.bcm.edu	37	5	70344903	70344903	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IGSF10	285313	hgsc.bcm.edu	37	3	151164336	151164336	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
JHDM1D	80853	hgsc.bcm.edu	37	7	139826594	139826594	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA0368	23392	hgsc.bcm.edu	37	9	114133030	114133030	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1310	55683	hgsc.bcm.edu	37	2	97278654	97278654	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KTN1	3895	hgsc.bcm.edu	37	14	56137506	56137506	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
L1CAM	3897	hgsc.bcm.edu	37	X	153131183	153131183	+	Silent	SNP	G	G	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LAMA1	284217	hgsc.bcm.edu	37	18	7008502	7008502	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC15	131578	hgsc.bcm.edu	37	3	194080112	194080112	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MMP2	4313	hgsc.bcm.edu	37	16	55519658	55519658	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC7	4589	hgsc.bcm.edu	37	4	71347353	71347353	+	Missense_Mutation	SNP	C	C	T	rs41396247	unknown	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NFU1	27247	hgsc.bcm.edu	37	2	69650833	69650833	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOL6	65083	hgsc.bcm.edu	37	9	33463856	33463856	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLA2G6	8398	hgsc.bcm.edu	37	22	38509556	38509556	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLB1	151056	hgsc.bcm.edu	37	2	28812901	28812901	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
POLDIP3	84271	hgsc.bcm.edu	37	22	42992326	42992326	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRKDC	5591	hgsc.bcm.edu	37	8	48805713	48805713	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRSS3	5646	hgsc.bcm.edu	37	9	33796657	33796657	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTEN	5728	hgsc.bcm.edu	37	10	89692884	89692884	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RABL5	64792	hgsc.bcm.edu	37	7	100959746	100959746	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RCC2	55920	hgsc.bcm.edu	37	1	17743003	17743003	+	Silent	SNP	T	T	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SEC23A	10484	hgsc.bcm.edu	37	14	39555078	39555078	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETX	23064	hgsc.bcm.edu	37	9	135203821	135203821	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC12A3	6559	hgsc.bcm.edu	37	16	56938335	56938335	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC16A6	9120	hgsc.bcm.edu	37	17	66268860	66268860	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC7A4	6545	hgsc.bcm.edu	37	22	21383473	21383473	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TCERG1	10915	hgsc.bcm.edu	37	5	145862191	145862191	+	Silent	SNP	A	A	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TG	7038	hgsc.bcm.edu	37	8	134025983	134025983	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UQCRC2	7385	hgsc.bcm.edu	37	16	21982911	21982911	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
VPS25	84313	hgsc.bcm.edu	37	17	40925801	40925801	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR5B	54554	hgsc.bcm.edu	37	3	122133767	122133767	+	Silent	SNP	T	T	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WNK2	65268	hgsc.bcm.edu	37	9	96002138	96002138	+	Silent	SNP	C	C	T	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XPR1	9213	hgsc.bcm.edu	37	1	180651511	180651511	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF787	126208	hgsc.bcm.edu	37	19	56614566	56614566	+	Silent	SNP	G	G	C	novel	.	TCGA-B0-4694-01A-01D-1361-10	TCGA-B0-4694-11A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
