Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AFF2	2334	broad.mit.edu	37	X	148035250	148035250	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALAD	210	broad.mit.edu	37	9	116154422	116154422	+	Silent	SNP	G	T	T	rs116243288	by1000genomes	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALAS2	212	broad.mit.edu	37	X	55039931	55039931	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73677725	73677725	+	Silent	SNP	T	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASTL	431705	broad.mit.edu	37	2	96789864	96789864	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108202714	108202714	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP6AP1L	92270	broad.mit.edu	37	5	81614047	81614047	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAP1	8314	broad.mit.edu	37	3	52441262	52441262	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C11orf84	144097	broad.mit.edu	37	11	63586459	63586459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD180	4064	broad.mit.edu	37	5	66479940	66479940	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHERP	10523	broad.mit.edu	37	19	16630029	16630029	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLOCK	9575	broad.mit.edu	37	4	56314944	56314945	+	Splice_Site	DNP	AC	GA	GA	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COG6	57511	broad.mit.edu	37	13	40268842	40268842	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	68084731	68084731	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143994011	143994011	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCAF4L1	285429	broad.mit.edu	37	4	41983927	41983927	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21913067	21913067	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196642652	196642652	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225729384	225729384	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPS15L1	58513	broad.mit.edu	37	19	16535940	16535940	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66205260	66205260	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13670697	13670697	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLVCR2	55640	broad.mit.edu	37	14	76045408	76045408	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GCLM	2730	broad.mit.edu	37	1	94370100	94370100	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GK	2710	broad.mit.edu	37	X	30695527	30695527	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GNA14	9630	broad.mit.edu	37	9	80043923	80043923	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GZF1	64412	broad.mit.edu	37	20	23347703	23347703	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75182782	75182782	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HRH4	59340	broad.mit.edu	37	18	22056721	22056721	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154396598	154396598	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166962002	166962002	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MIR450A1	554214	broad.mit.edu	37	X	133674458	133674458	+	miRNA	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29600300	29600300	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYOT	9499	broad.mit.edu	37	5	137213306	137213306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAB1	4664	broad.mit.edu	37	2	191550288	191550288	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NFE2L2	4780	broad.mit.edu	37	2	178098803	178098803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NR1H4	9971	broad.mit.edu	37	12	100930297	100930297	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144865887	144865887	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHF23	79142	broad.mit.edu	37	17	7139521	7139521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PIGG	54872	broad.mit.edu	37	4	515604	515604	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLR2H	5437	broad.mit.edu	37	3	184082991	184082991	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RABEP2	79874	broad.mit.edu	37	16	28916276	28916276	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30332994	30332994	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51173795	51173795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71357832	71357832	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SERPINA9	327657	broad.mit.edu	37	14	94933580	94933580	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SFRS4	6429	broad.mit.edu	37	1	29481292	29481292	+	Missense_Mutation	SNP	A	G	G	rs111495066	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC27A1	376497	broad.mit.edu	37	19	17611525	17611525	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMARCE1	6605	broad.mit.edu	37	17	38798730	38798730	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84292066	84292066	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPRY2	10253	broad.mit.edu	37	13	80911095	80911095	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPSB1	80176	broad.mit.edu	37	1	9415972	9415972	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STK31	56164	broad.mit.edu	37	7	23802525	23802525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113241933	113241933	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64547342	64547342	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TBC1D25	4943	broad.mit.edu	37	X	48403330	48403330	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TCF21	6943	broad.mit.edu	37	6	134210722	134210722	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104463697	104463697	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68719845	68719845	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNPO1	3842	broad.mit.edu	37	5	72185719	72185719	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TOR3A	64222	broad.mit.edu	37	1	179057211	179057211	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIM61	391712	broad.mit.edu	37	4	165891059	165891059	+	Silent	SNP	C	G	G	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UIMC1	51720	broad.mit.edu	37	5	176402397	176402397	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183752	10183753	+	Missense_Mutation	DNP	TC	AT	AT	rs5030803	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	TC	TC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241875161	241875161	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF655	79027	broad.mit.edu	37	7	99170286	99170286	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5097-01	TCGA-B0-5097-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
