Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAP1	11033	broad.mit.edu	37	7	939073	939073	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALPK3	57538	broad.mit.edu	37	15	85406027	85406027	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANLN	54443	broad.mit.edu	37	7	36478858	36478858	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32560575	32560575	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAP1	8314	broad.mit.edu	37	3	52442512	52442512	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31599655	31599655	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C17orf103	256302	broad.mit.edu	37	17	21147503	21147503	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C3	718	broad.mit.edu	37	19	6686809	6686809	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6orf35	729515	broad.mit.edu	37	6	157744466	157744466	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAPN3	825	broad.mit.edu	37	15	42702005	42702005	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCNT1	904	broad.mit.edu	37	12	49110458	49110458	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHL1	10752	broad.mit.edu	37	3	443351	443351	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CPEB1	64506	broad.mit.edu	37	15	83226709	83226709	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CPXCR1	53336	broad.mit.edu	37	X	88009260	88009260	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CRK	1398	broad.mit.edu	37	17	1326915	1326915	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CUZD1	50624	broad.mit.edu	37	10	124593448	124593448	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYP26B1	56603	broad.mit.edu	37	2	72359545	72359545	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ECM1	1893	broad.mit.edu	37	1	150482475	150482475	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EVPL	2125	broad.mit.edu	37	17	74011147	74011147	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8165827	8165827	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FCRLA	84824	broad.mit.edu	37	1	161677075	161677075	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FGFBP1	9982	broad.mit.edu	37	4	15938034	15938034	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLVCR2	55640	broad.mit.edu	37	14	76088434	76088434	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
JMY	133746	broad.mit.edu	37	5	78608277	78608277	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7026067	7026067	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAB21L1	4081	broad.mit.edu	37	13	36049373	36049373	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1268529	1268529	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152352797	152352797	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NHS	4810	broad.mit.edu	37	X	17745608	17745608	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NLRX1	79671	broad.mit.edu	37	11	119050726	119050726	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPBWR2	2832	broad.mit.edu	37	20	62737383	62737383	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NRF1	4899	broad.mit.edu	37	7	129297261	129297261	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NTN4	59277	broad.mit.edu	37	12	96181160	96181161	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NVL	4931	broad.mit.edu	37	1	224491542	224491542	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR1A1	8383	broad.mit.edu	37	17	3119395	3119395	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHKA2	5256	broad.mit.edu	37	X	18970644	18970644	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POC1B	282809	broad.mit.edu	37	12	89885726	89885726	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18836212	18836212	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48694798	48694798	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40944427	40944427	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RABGAP1	23637	broad.mit.edu	37	9	125865394	125865394	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RANBP2	5903	broad.mit.edu	37	2	109384143	109384143	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RBM14	10432	broad.mit.edu	37	11	66391778	66391778	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RHPN2	85415	broad.mit.edu	37	19	33493761	33493761	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RSPO1	284654	broad.mit.edu	37	1	38079542	38079542	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70332433	70332433	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2116050	2116050	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118598450	118598450	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	912892	912892	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120475390	120475390	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TLR8	51311	broad.mit.edu	37	X	12939545	12939545	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TXNDC12	51060	broad.mit.edu	37	1	52492991	52492991	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57640818	57640818	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183794	10183794	+	Missense_Mutation	SNP	G	T	T	rs119103277	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VIPR2	7434	broad.mit.edu	37	7	158829472	158829472	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDR37	22884	broad.mit.edu	37	10	1149775	1149775	+	Silent	SNP	A	C	C	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106813890	106813890	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5107-01	TCGA-B0-5107-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
