Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AMY2A	279	broad.mit.edu	37	1	104160101	104160101	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
APC2	10297	broad.mit.edu	37	19	1456344	1456344	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASXL1	171023	broad.mit.edu	37	20	31025137	31025137	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31318800	31318800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BHLHB9	80823	broad.mit.edu	37	X	102005104	102005104	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC104	112942	broad.mit.edu	37	2	55772134	55772134	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD44	960	broad.mit.edu	37	11	35208449	35208449	+	Splice_Site	SNP	T	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104054940	104054940	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CEP120	153241	broad.mit.edu	37	5	122685709	122685709	+	Silent	SNP	A	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CWC22	57703	broad.mit.edu	37	2	180818964	180818964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56394513	56394513	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73462860	73462860	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54791201	54791201	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBXO43	286151	broad.mit.edu	37	8	101153613	101153613	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58128451	58128451	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39420850	39420850	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94547477	94547477	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14832651	14832651	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HNRNPH1	3187	broad.mit.edu	37	5	179047903	179047903	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53230876	53230877	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRT16	3868	broad.mit.edu	37	17	39768515	39768515	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	-	-	rs35089393	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	GGCTGTGGA	GGCTGTGGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MFI2	4241	broad.mit.edu	37	3	196753618	196753618	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MIOX	55586	broad.mit.edu	37	22	50926751	50926751	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49420872	49420872	+	Silent	SNP	G	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25442206	25442206	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56077194	56077194	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57326087	57326087	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLBD1	79887	broad.mit.edu	37	12	14656715	14656715	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9374306	9374306	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219487602	219487602	+	Splice_Site	SNP	G	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPN7	5778	broad.mit.edu	37	1	202117740	202117740	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RBM16	22828	broad.mit.edu	37	6	155153658	155153658	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
S100A12	6283	broad.mit.edu	37	1	153346341	153346341	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SIK2	23235	broad.mit.edu	37	11	111591281	111591281	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC22A6	9356	broad.mit.edu	37	11	62744780	62744780	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMO	6608	broad.mit.edu	37	7	128851985	128851985	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SOS2	6655	broad.mit.edu	37	14	50626575	50626575	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TGM1	7051	broad.mit.edu	37	14	24731316	24731316	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UHRF2	115426	broad.mit.edu	37	9	6420934	6420934	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215987118	215987118	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188248	10188248	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF302	55900	broad.mit.edu	37	19	35175869	35175869	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B0-5108-01	TCGA-B0-5108-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
