Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AP4E1	23431	broad.mit.edu	37	15	51216161	51216161	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AP4E1	23431	broad.mit.edu	37	15	51217400	51217400	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C11orf24	53838	broad.mit.edu	37	11	68029634	68029634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C17orf49	124944	broad.mit.edu	37	17	6919830	6919830	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C20orf103	24141	broad.mit.edu	37	20	9496942	9496942	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65143848	65143848	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNG2	10369	broad.mit.edu	37	22	36960524	36960524	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CBLN1	869	broad.mit.edu	37	16	49313372	49313372	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196695938	196695938	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33133477	33133477	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDX20	11218	broad.mit.edu	37	1	112303111	112303111	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNALI1	7802	broad.mit.edu	37	1	38022628	38022628	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNTTIP2	30836	broad.mit.edu	37	1	94335473	94335473	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ELFN2	114794	broad.mit.edu	37	22	37770000	37770000	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM83C	128876	broad.mit.edu	37	20	33875579	33875579	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151815617	151815617	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIST1H2BO	8348	broad.mit.edu	37	6	27861305	27861305	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MMP26	56547	broad.mit.edu	37	11	5011850	5011850	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69926368	69926368	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	206997774	206997774	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEXN	91624	broad.mit.edu	37	1	78383401	78383401	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200014711	200014711	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78412936	78412936	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
P2RX1	5023	broad.mit.edu	37	17	3807223	3807223	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52621519	52621519	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLR2A	5430	broad.mit.edu	37	17	7406478	7406478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRR12	57479	broad.mit.edu	37	19	50118189	50118189	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RBM9	23543	broad.mit.edu	37	22	36157291	36157291	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF145	153830	broad.mit.edu	37	5	158603776	158603776	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SP140L	93349	broad.mit.edu	37	2	231254640	231254641	+	Missense_Mutation	DNP	GA	TT	TT	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM104	54868	broad.mit.edu	37	17	72832324	72832324	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNFRSF10A	8797	broad.mit.edu	37	8	23056802	23056802	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TUBB4	10382	broad.mit.edu	37	19	6501365	6501365	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VANGL1	81839	broad.mit.edu	37	1	116233918	116233918	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10191470	10191470	+	Splice_Site	SNP	G	T	T	rs5030817	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38937718	38937718	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766976	77766976	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZZZ3	26009	broad.mit.edu	37	1	78045311	78045311	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B0-5113-01	TCGA-B0-5113-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
