Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ANXA9	8416	broad.mit.edu	37	1	150956864	150956864	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29346528	29346528	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASPHD2	57168	broad.mit.edu	37	22	26830026	26830026	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATF7IP2	80063	broad.mit.edu	37	16	10567377	10567377	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BSN	8927	broad.mit.edu	37	3	49662500	49662500	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C10orf118	55088	broad.mit.edu	37	10	115889683	115889683	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C19orf61	56006	broad.mit.edu	37	19	44237823	44237823	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1S	716	broad.mit.edu	37	12	7177661	7177661	+	Silent	SNP	T	G	G	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD3G	917	broad.mit.edu	37	11	118221315	118221315	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94038888	94038888	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48381066	48381066	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DENND2C	163259	broad.mit.edu	37	1	115166246	115166246	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOPEY1	23033	broad.mit.edu	37	6	83823098	83823098	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPI	2821	broad.mit.edu	37	19	34859595	34859595	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HAPLN1	1404	broad.mit.edu	37	5	82940357	82940357	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KANK3	256949	broad.mit.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	-	-	rs79105740	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	TCGCTGTCGCCA	TCGCTGTCGCCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO10	4651	broad.mit.edu	37	5	16699579	16699579	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192250811	192250811	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAPRT1	93100	broad.mit.edu	37	8	144657686	144657686	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152348619	152348619	+	Silent	SNP	A	C	C	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NPLOC4	55666	broad.mit.edu	37	17	79589205	79589205	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR10G4	390264	broad.mit.edu	37	11	123887007	123887007	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55406262	55406262	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140222015	140222015	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140762931	140762931	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153277480	153277480	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRR12	57479	broad.mit.edu	37	19	50100809	50100810	+	Frame_Shift_Del	DEL	CT	-	-	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37144892	37144892	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SRL	6345	broad.mit.edu	37	16	4245571	4245571	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMLHE	55217	broad.mit.edu	37	X	154754204	154754205	+	Missense_Mutation	DNP	GA	AG	AG	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSC22D1	8848	broad.mit.edu	37	13	45008837	45008837	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UACA	55075	broad.mit.edu	37	15	70961034	70961034	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UPF2	26019	broad.mit.edu	37	10	11985089	11985089	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183725	10183725	+	Nonsense_Mutation	SNP	C	A	A	rs5030826	unknown	TCGA-B2-3924-01	TCGA-B2-3924-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
