Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AGMAT	79814	hgsc.bcm.edu	37	1	15909873	15909873	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANK3	288	hgsc.bcm.edu	37	10	61834108	61834108	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ASB15	142685	hgsc.bcm.edu	37	7	123254583	123254583	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C7orf23	79161	hgsc.bcm.edu	37	7	86827282	86827282	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLDN16	10686	hgsc.bcm.edu	37	3	190106143	190106143	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL6A2	1292	hgsc.bcm.edu	37	21	47533975	47533975	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COMP	1311	hgsc.bcm.edu	37	19	18901411	18901411	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CTSW	1521	hgsc.bcm.edu	37	11	65648930	65648930	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DIP2B	57609	hgsc.bcm.edu	37	12	51092926	51092926	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAH3	55567	hgsc.bcm.edu	37	16	21098199	21098199	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNER	92737	hgsc.bcm.edu	37	2	230411681	230411681	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBXO27	126433	hgsc.bcm.edu	37	19	39521925	39521925	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GABRG2	2566	hgsc.bcm.edu	37	5	161580106	161580106	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HEATR7A	727957	hgsc.bcm.edu	37	8	145275539	145275539	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HSPA4L	22824	hgsc.bcm.edu	37	4	128725181	128725181	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNB2	9312	hgsc.bcm.edu	37	8	73480273	73480273	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA0528	9847	hgsc.bcm.edu	37	12	22676365	22676365	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIN	22944	hgsc.bcm.edu	37	10	7798064	7798064	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
METTL9	51108	hgsc.bcm.edu	37	16	21629219	21629219	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC16	94025	hgsc.bcm.edu	37	19	9066446	9066446	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR8D2	283160	hgsc.bcm.edu	37	11	124189374	124189374	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52692333	52692333	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCM1	5108	hgsc.bcm.edu	37	8	17814231	17814231	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCM1	5108	hgsc.bcm.edu	37	8	17814232	17814232	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDGFRA	5156	hgsc.bcm.edu	37	4	55144148	55144148	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIAS2	9063	hgsc.bcm.edu	37	18	44408068	44408068	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRDM14	63978	hgsc.bcm.edu	37	8	70981667	70981667	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRPS2	5634	hgsc.bcm.edu	37	X	12827407	12827407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRSS55	203074	hgsc.bcm.edu	37	8	10396087	10396087	+	Silent	SNP	C	C	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPN4	5775	hgsc.bcm.edu	37	2	120567546	120567546	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPRQ	374462	hgsc.bcm.edu	37	12	80839468	80839468	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RFFL	117584	hgsc.bcm.edu	37	17	33348596	33348596	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RPS6KA3	6197	hgsc.bcm.edu	37	X	20181099	20181099	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEMA3D	223117	hgsc.bcm.edu	37	7	84642124	84642124	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TBX22	50945	hgsc.bcm.edu	37	X	79286419	79286419	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TNC	3371	hgsc.bcm.edu	37	9	117803275	117803275	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TNIK	23043	hgsc.bcm.edu	37	3	170946005	170946005	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VRK3	51231	hgsc.bcm.edu	37	19	50512542	50512542	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDR74	54663	hgsc.bcm.edu	37	11	62601147	62601147	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
XYLT1	64131	hgsc.bcm.edu	37	16	17211800	17211800	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZBBX	79740	hgsc.bcm.edu	37	3	167045872	167045872	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZCCHC9	84240	hgsc.bcm.edu	37	5	80600728	80600728	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF175	7728	hgsc.bcm.edu	37	19	52090780	52090780	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B4-5377-01A-01D-1501-10	TCGA-B4-5377-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
