Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AGAP3	116988	broad.mit.edu	37	7	150784022	150784022	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106975346	106975346	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
B4GALNT4	338707	broad.mit.edu	37	11	372684	372684	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BCL2A1	597	broad.mit.edu	37	15	80253472	80253472	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BSDC1	55108	broad.mit.edu	37	1	32842063	32842063	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C2orf62	375307	broad.mit.edu	37	2	219232614	219232614	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7373597	7373597	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31682989	31682989	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDK8	1024	broad.mit.edu	37	13	26974672	26974672	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CFTR	1080	broad.mit.edu	37	7	117199625	117199625	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39085772	39085772	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COPA	1314	broad.mit.edu	37	1	160261217	160261217	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	375466	375466	+	Silent	SNP	G	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EP300	2033	broad.mit.edu	37	22	41574794	41574794	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38192872	38192872	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103474191	103474193	+	Missense_Mutation	Complex_substitution	TNA	CNT	CNT	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	TNA	TNA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177199237	177199237	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM73A	374986	broad.mit.edu	37	1	78325069	78325069	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45937233	45937233	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152283060	152283060	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FOXC2	2303	broad.mit.edu	37	16	86601069	86601069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FSCB	84075	broad.mit.edu	37	14	44975274	44975274	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRIN1	2902	broad.mit.edu	37	9	140040311	140040311	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GTF2E1	2960	broad.mit.edu	37	3	120495384	120495384	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242179325	242179325	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIST1H2AM	8336	broad.mit.edu	37	6	27860781	27860781	+	Silent	SNP	C	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
INSIG2	51141	broad.mit.edu	37	2	118854300	118854300	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73485346	73485346	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60921136	60921136	+	Splice_Site	SNP	C	T	T	rs112620160	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183204764	183204764	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133911635	133911635	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRIG1	26018	broad.mit.edu	37	3	66502055	66502055	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MACROD2	140733	broad.mit.edu	37	20	15967789	15967789	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42344673	42344673	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10426861	10426861	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47432966	47432966	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAF1	92345	broad.mit.edu	37	4	164050358	164050358	+	Silent	SNP	A	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73590937	73590937	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NLE1	54475	broad.mit.edu	37	17	33464021	33464021	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NMT2	9397	broad.mit.edu	37	10	15154856	15154856	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUP88	4927	broad.mit.edu	37	17	5290385	5290385	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52678806	52678806	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHB13	56123	broad.mit.edu	37	5	140594137	140594137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKD3	23683	broad.mit.edu	37	2	37486752	37486752	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTEN	5728	broad.mit.edu	37	10	89717762	89717762	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	176015396	176015396	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152300220	152300220	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31468136	31468136	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF216	54476	broad.mit.edu	37	7	5752486	5752486	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
S100A10	6281	broad.mit.edu	37	1	151955649	151955649	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SALL2	6297	broad.mit.edu	37	14	21992408	21992408	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50903272	50903272	+	Silent	SNP	T	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEPT4	5414	broad.mit.edu	37	17	56603081	56603081	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16257994	16257995	+	Missense_Mutation	DNP	TG	CA	CA	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16262076	16262076	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SREBF2	6721	broad.mit.edu	37	22	42273293	42273293	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM102	284114	broad.mit.edu	37	17	7340786	7340786	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9623811	9623811	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIM23	373	broad.mit.edu	37	5	64907630	64907630	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSPAN31	6302	broad.mit.edu	37	12	58140428	58140428	+	Silent	SNP	G	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VARS2	57176	broad.mit.edu	37	6	30891256	30891256	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS11	55823	broad.mit.edu	37	11	118940211	118940211	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44801378	44801378	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF398	57541	broad.mit.edu	37	7	148876816	148876816	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF407	55628	broad.mit.edu	37	18	72346178	72346178	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF491	126069	broad.mit.edu	37	19	11917136	11917136	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B8-5158-01	TCGA-B8-5158-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
