Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AGFG1	3267	hgsc.bcm.edu	37	2	228395821	228395821	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANO4	121601	hgsc.bcm.edu	37	12	101505399	101505399	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ANPEP	290	hgsc.bcm.edu	37	15	90348362	90348362	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AP3B1	8546	hgsc.bcm.edu	37	5	77523970	77523970	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARID1A	8289	hgsc.bcm.edu	37	1	27094453	27094453	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARID2	196528	hgsc.bcm.edu	37	12	46230650	46230650	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BAP1	8314	hgsc.bcm.edu	37	3	52436689	52436689	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BRD4	23476	hgsc.bcm.edu	37	19	15367030	15367030	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C15orf2	23742	hgsc.bcm.edu	37	15	24922520	24922520	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCNDBP1	23582	hgsc.bcm.edu	37	15	43482567	43482567	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHD3	1107	hgsc.bcm.edu	37	17	7797795	7797795	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CYP4A22	284541	hgsc.bcm.edu	37	1	47610310	47610310	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNHD1	144132	hgsc.bcm.edu	37	11	6568627	6568627	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNHD1	144132	hgsc.bcm.edu	37	11	6579324	6579326	+	In_Frame_Del	DEL	TGC	TGC	-	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	TGC	TGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAM105A	54491	hgsc.bcm.edu	37	5	14608927	14608927	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GML	2765	hgsc.bcm.edu	37	8	143927977	143927977	+	Silent	SNP	T	T	G	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GUCA1B	2979	hgsc.bcm.edu	37	6	42156333	42156333	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HNRNPK	3190	hgsc.bcm.edu	37	9	86585175	86585175	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HOXD11	3237	hgsc.bcm.edu	37	2	176973807	176973807	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IKZF5	64376	hgsc.bcm.edu	37	10	124753309	124753309	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
IQCB1	9657	hgsc.bcm.edu	37	3	121545007	121545007	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIAA1644	85352	hgsc.bcm.edu	37	22	44681611	44681611	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NAA11	84779	hgsc.bcm.edu	37	4	80246576	80246576	+	Silent	SNP	C	C	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NBAS	51594	hgsc.bcm.edu	37	2	15468417	15468417	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NOS3	4846	hgsc.bcm.edu	37	7	150703567	150703567	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCBP2	5094	hgsc.bcm.edu	37	12	53848638	53848638	+	Silent	SNP	A	A	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCLO	27445	hgsc.bcm.edu	37	7	82595120	82595120	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRDM7	11105	hgsc.bcm.edu	37	16	90127868	90127868	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RIMBP2	23504	hgsc.bcm.edu	37	12	130897262	130897262	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RSRC1	51319	hgsc.bcm.edu	37	3	158261178	158261178	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SARS	6301	hgsc.bcm.edu	37	1	109771043	109771043	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SCN4A	6329	hgsc.bcm.edu	37	17	62018757	62018757	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SDCBP	6386	hgsc.bcm.edu	37	8	59490730	59490730	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SETD2	29072	hgsc.bcm.edu	37	3	47059128	47059128	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC16A9	220963	hgsc.bcm.edu	37	10	61443944	61443944	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC5A12	159963	hgsc.bcm.edu	37	11	26720047	26720047	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPTB	6710	hgsc.bcm.edu	37	14	65237810	65237810	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBC1D3F	84218	hgsc.bcm.edu	37	17	36288688	36288688	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBCD	6904	hgsc.bcm.edu	37	17	80887147	80887147	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRPM5	29850	hgsc.bcm.edu	37	11	2439023	2439023	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TSPYL6	388951	hgsc.bcm.edu	37	2	54483083	54483083	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TXNIP	10628	hgsc.bcm.edu	37	1	145440062	145440064	+	In_Frame_Del	DEL	AAG	AAG	-	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	AAG	AAG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
USP24	23358	hgsc.bcm.edu	37	1	55547097	55547097	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDFY3	23001	hgsc.bcm.edu	37	4	85748120	85748120	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF280C	55609	hgsc.bcm.edu	37	X	129377594	129377594	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4340-01A-01D-1366-10	TCGA-BP-4340-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
