Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AGK	55750	hgsc.bcm.edu	37	7	141255279	141255279	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AGK	55750	hgsc.bcm.edu	37	7	141255283	141255283	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
APOC3	345	hgsc.bcm.edu	37	11	116703546	116703546	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARAP1	116985	hgsc.bcm.edu	37	11	72418405	72418405	+	Nonsense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BNC1	646	hgsc.bcm.edu	37	15	83926300	83926300	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C18orf21	83608	hgsc.bcm.edu	37	18	33557476	33557476	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C6orf167	253714	hgsc.bcm.edu	37	6	97629924	97629924	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C9orf116	138162	hgsc.bcm.edu	37	9	138387377	138387377	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC114	93233	hgsc.bcm.edu	37	19	48821663	48821663	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCDC97	90324	hgsc.bcm.edu	37	19	41822486	41822486	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CCNB3	85417	hgsc.bcm.edu	37	X	50090767	50090767	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CLCN6	1185	hgsc.bcm.edu	37	1	11894064	11894064	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNOT3	4849	hgsc.bcm.edu	37	19	54656179	54656179	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COX15	1355	hgsc.bcm.edu	37	10	101478155	101478155	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CRB1	23418	hgsc.bcm.edu	37	1	197390461	197390461	+	Silent	SNP	G	G	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSMD1	64478	hgsc.bcm.edu	37	8	3046472	3046472	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DAGLA	747	hgsc.bcm.edu	37	11	61505673	61505673	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DUSP9	1852	hgsc.bcm.edu	37	X	152915555	152915555	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EDAR	10913	hgsc.bcm.edu	37	2	109513432	109513432	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FMN2	56776	hgsc.bcm.edu	37	1	240370934	240370934	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GGT7	2686	hgsc.bcm.edu	37	20	33450696	33450696	+	Nonsense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GIPC1	10755	hgsc.bcm.edu	37	19	14591229	14591229	+	Silent	SNP	A	A	G	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GLYR1	84656	hgsc.bcm.edu	37	16	4855240	4855240	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GMCL1	64395	hgsc.bcm.edu	37	2	70096896	70096896	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GRIA4	2893	hgsc.bcm.edu	37	11	105795320	105795320	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ISG15	9636	hgsc.bcm.edu	37	1	949654	949654	+	Silent	SNP	A	A	G	rs8997	unknown	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KCNJ12	3768	hgsc.bcm.edu	37	17	21319845	21319845	+	Silent	SNP	C	C	T	rs72846670	unknown	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRP8	7804	hgsc.bcm.edu	37	1	53792606	53792606	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC48	83450	hgsc.bcm.edu	37	17	17910368	17910368	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC8B	23507	hgsc.bcm.edu	37	1	90049857	90049857	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MAGEB16	139604	hgsc.bcm.edu	37	X	35821146	35821146	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MUC16	94025	hgsc.bcm.edu	37	19	9087231	9087231	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MYT1L	23040	hgsc.bcm.edu	37	2	1926319	1926319	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NEGR1	257194	hgsc.bcm.edu	37	1	71873192	71873192	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR2T35	403244	hgsc.bcm.edu	37	1	248802249	248802250	+	In_Frame_Ins	INS	-	-	AGA	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OR6K2	81448	hgsc.bcm.edu	37	1	158669955	158669955	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PCMTD1	115294	hgsc.bcm.edu	37	8	52773607	52773607	+	Silent	SNP	C	C	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDS5A	23244	hgsc.bcm.edu	37	4	39850476	39850476	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PHF6	84295	hgsc.bcm.edu	37	X	133547905	133547905	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLEKHA1	59338	hgsc.bcm.edu	37	10	124189325	124189325	+	Silent	SNP	T	T	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PRR19	284338	hgsc.bcm.edu	37	19	42814578	42814578	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTEN	5728	hgsc.bcm.edu	37	10	89692891	89692891	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PTPRJ	5795	hgsc.bcm.edu	37	11	48171013	48171013	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RNF44	22838	hgsc.bcm.edu	37	5	175957205	175957206	+	Frame_Shift_Del	DEL	TG	TG	-	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	TG	TG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ROBO4	54538	hgsc.bcm.edu	37	11	124763776	124763776	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPH3AL	9501	hgsc.bcm.edu	37	17	171098	171098	+	Silent	SNP	T	T	G	rs73971738	unknown	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SENP6	26054	hgsc.bcm.edu	37	6	76388338	76388338	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SIGLEC8	27181	hgsc.bcm.edu	37	19	51958885	51958885	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC7A10	56301	hgsc.bcm.edu	37	19	33703821	33703821	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STARD9	57519	hgsc.bcm.edu	37	15	42978600	42978600	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STAT6	6778	hgsc.bcm.edu	37	12	57501489	57501489	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TAS2R9	50835	hgsc.bcm.edu	37	12	10962229	10962229	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TEX11	56159	hgsc.bcm.edu	37	X	69811638	69811638	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UBE2A	7319	hgsc.bcm.edu	37	X	118716565	118716565	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WNT11	7481	hgsc.bcm.edu	37	11	75898207	75898207	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XPO1	7514	hgsc.bcm.edu	37	2	61706043	61706043	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF225	7768	hgsc.bcm.edu	37	19	44636673	44636673	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF619	285267	hgsc.bcm.edu	37	3	40529519	40529519	+	Silent	SNP	C	C	G	novel	.	TCGA-BP-4351-01A-01D-1366-10	TCGA-BP-4351-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
