Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACAN	176	broad.mit.edu	37	15	89395179	89395179	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANPEP	290	broad.mit.edu	37	15	90340889	90340889	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119802150	119802150	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75037720	75037720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7806304	7806304	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COPG2	26958	broad.mit.edu	37	7	130295934	130295934	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CXXC1	30827	broad.mit.edu	37	18	47808972	47808972	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125465270	125465272	+	In_Frame_Del	DEL	CTC	-	-	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	CTC	CTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DLX4	1748	broad.mit.edu	37	17	48051147	48051147	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNTTIP2	30836	broad.mit.edu	37	1	94343391	94343391	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM116B	414918	broad.mit.edu	37	22	50752245	50752245	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLCN	201163	broad.mit.edu	37	17	17119744	17119744	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FSTL4	23105	broad.mit.edu	37	5	132585226	132585226	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPAA1	8733	broad.mit.edu	37	8	145138388	145138388	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HMGCS2	3158	broad.mit.edu	37	1	120307117	120307117	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118464696	118464696	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62349973	62349973	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112524490	112524490	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91476196	91476196	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAP4	4134	broad.mit.edu	37	3	47957988	47957988	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63668343	63668343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13826006	13826006	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151851228	151851228	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100680563	100680563	+	Missense_Mutation	SNP	C	A	A	rs117408972	by1000genomes	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72300251	72300251	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OSBPL5	114879	broad.mit.edu	37	11	3150289	3150289	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140710369	140710369	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCF11	51585	broad.mit.edu	37	11	82877718	82877718	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99120376	99120376	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SAP130	79595	broad.mit.edu	37	2	128757921	128757921	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SERPINB5	5268	broad.mit.edu	37	18	61154215	61154215	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC12A2	6558	broad.mit.edu	37	5	127466804	127466804	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC35C1	55343	broad.mit.edu	37	11	45832463	45832463	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SUPT5H	6829	broad.mit.edu	37	19	39964875	39964875	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183714	10183720	+	Frame_Shift_Del	DEL	CGTGCTG	-	-	rs63650860;rs104893827	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	CGTGCTG	CGTGCTG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VWA3A	146177	broad.mit.edu	37	16	22162103	22162103	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WNT7A	7476	broad.mit.edu	37	3	13921263	13921263	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZBTB41	360023	broad.mit.edu	37	1	197169423	197169423	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF283	284349	broad.mit.edu	37	19	44352238	44352238	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF770	54989	broad.mit.edu	37	15	35274804	35274804	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4961-01	TCGA-BP-4961-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
