Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA1	19	broad.mit.edu	37	9	107564349	107564349	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACSM3	6296	broad.mit.edu	37	16	20796410	20796410	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178579193	178579193	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AIM1L	55057	broad.mit.edu	37	1	26663759	26663759	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93695500	93695500	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	107937769	107937769	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C12orf10	60314	broad.mit.edu	37	12	53700821	53700822	+	Nonsense_Mutation	DNP	GC	AA	AA	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf198	84886	broad.mit.edu	37	1	230979640	230979640	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	18021869	18021869	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLCN5	1184	broad.mit.edu	37	X	49840554	49840554	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CS	1431	broad.mit.edu	37	12	56669791	56669791	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DBI	1622	broad.mit.edu	37	2	120129819	120129819	+	Splice_Site	SNP	A	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37632409	37632409	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DIAPH3	81624	broad.mit.edu	37	13	60584726	60584726	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196837108	196837108	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM108A1	81926	broad.mit.edu	37	19	1881411	1881411	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126389800	126389801	+	Missense_Mutation	DNP	GC	CA	CA	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147781573	147781573	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HAGH	3029	broad.mit.edu	37	16	1866929	1866929	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43400541	43400541	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IFNA5	3442	broad.mit.edu	37	9	21304871	21304871	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLF8	11279	broad.mit.edu	37	X	56291625	56291625	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLHL24	54800	broad.mit.edu	37	3	183389006	183389006	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LOXL4	84171	broad.mit.edu	37	10	100015482	100015482	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72192081	72192081	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76789332	76789332	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151153138	151153138	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43924441	43924441	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRODH2	58510	broad.mit.edu	37	19	36304176	36304176	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36133906	36133906	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RASSF6	166824	broad.mit.edu	37	4	74459276	74459276	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11361380	11361380	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPL30	6156	broad.mit.edu	37	8	99054939	99054939	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPUSD2	27079	broad.mit.edu	37	15	40866065	40866065	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RWDD3	25950	broad.mit.edu	37	1	95710200	95710200	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCAND3	114821	broad.mit.edu	37	6	28542935	28542935	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC29A3	55315	broad.mit.edu	37	10	73111405	73111405	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21353532	21353532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149515189	149515189	+	Splice_Site	DEL	A	-	-	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF862	643641	broad.mit.edu	37	7	149544912	149544912	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5008-01	TCGA-BP-5008-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
