Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACSL3	2181	broad.mit.edu	37	2	223795455	223795455	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72498659	72498659	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADARB1	104	broad.mit.edu	37	21	46642103	46642103	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AFF1	4299	broad.mit.edu	37	4	88055842	88055842	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109681436	109681436	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201450857	201450857	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
APC2	10297	broad.mit.edu	37	19	1467881	1467881	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARFGAP2	84364	broad.mit.edu	37	11	47193064	47193064	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69045086	69045086	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAP1	8314	broad.mit.edu	37	3	52443892	52443892	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CARS	833	broad.mit.edu	37	11	3039892	3039892	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC48	79825	broad.mit.edu	37	3	128753037	128753037	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC78	124093	broad.mit.edu	37	16	775560	775560	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19184099	19184099	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211441087	211441087	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCDC2B	149069	broad.mit.edu	37	1	32678141	32678141	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDX46	9879	broad.mit.edu	37	5	134153324	134153324	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DENND2D	79961	broad.mit.edu	37	1	111734927	111734927	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF1	10209	broad.mit.edu	37	17	39846142	39846142	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ENPP6	133121	broad.mit.edu	37	4	185138820	185138820	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EXPH5	23086	broad.mit.edu	37	11	108383516	108383516	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FEZ1	9638	broad.mit.edu	37	11	125324081	125324081	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FNTB	2342	broad.mit.edu	37	14	65482387	65482387	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
G2E3	55632	broad.mit.edu	37	14	31071304	31071304	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR179	440435	broad.mit.edu	37	17	36486397	36486397	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
H1F0	3005	broad.mit.edu	37	22	38201647	38201647	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HAS3	3038	broad.mit.edu	37	16	69149149	69149149	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
JAK3	3718	broad.mit.edu	37	19	17945490	17945490	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF14	9928	broad.mit.edu	37	1	200562851	200562851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200959172	200959172	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLHDC8B	200942	broad.mit.edu	37	3	49212294	49212294	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLHL36	79786	broad.mit.edu	37	16	84691436	84691436	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP12-1	353332	broad.mit.edu	37	21	46101867	46101867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6311557	6311557	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LIMK2	3985	broad.mit.edu	37	22	31674310	31674310	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRC4	64101	broad.mit.edu	37	7	127670481	127670481	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MGC29506	51237	broad.mit.edu	37	5	138724269	138724269	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118375278	118375278	+	Nonsense_Mutation	SNP	G	T	T	rs66827996	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52702579	52702579	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAF1	92345	broad.mit.edu	37	4	164087855	164087855	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152551064	152551064	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUP88	4927	broad.mit.edu	37	17	5322749	5322749	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR7A10	390892	broad.mit.edu	37	19	14952548	14952548	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHA1	56147	broad.mit.edu	37	5	140166338	140166338	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86325787	86325787	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19553710	19553710	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRIM1	5557	broad.mit.edu	37	12	57139904	57139904	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PSMB11	122706	broad.mit.edu	37	14	23511526	23511526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70970258	70970258	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PYDC1	260434	broad.mit.edu	37	16	31228342	31228342	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPS4X	6191	broad.mit.edu	37	X	71493721	71493721	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102249094	102249094	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SKIV2L	6499	broad.mit.edu	37	6	31930533	31930533	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNRK	54861	broad.mit.edu	37	3	43389698	43389698	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16199600	16199600	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPSB1	80176	broad.mit.edu	37	1	9416147	9416147	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30735820	30735820	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TAF5	6877	broad.mit.edu	37	10	105133273	105133273	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98182331	98182331	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TLR1	7096	broad.mit.edu	37	4	38799865	38799865	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM87A	25963	broad.mit.edu	37	15	42512318	42512318	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRAF5	7188	broad.mit.edu	37	1	211545849	211545849	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRANK1	9881	broad.mit.edu	37	3	36872739	36872739	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10166557	10166557	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP48	84196	broad.mit.edu	37	1	22032286	22032286	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188240	10188240	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZBTB20	26137	broad.mit.edu	37	3	114058081	114058081	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZMYND11	10771	broad.mit.edu	37	10	298337	298337	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5182-01	TCGA-BP-5182-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
