Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADCY9	115	hgsc.bcm.edu	37	16	4015908	4015908	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AHNAK2	113146	hgsc.bcm.edu	37	14	105411971	105411971	+	Missense_Mutation	SNP	T	T	C	rs28737397	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKRD10	55608	hgsc.bcm.edu	37	13	111545497	111545497	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BCL11A	53335	hgsc.bcm.edu	37	2	60695929	60695929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BEAN1	146227	hgsc.bcm.edu	37	16	66511499	66511499	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C11orf87	399947	hgsc.bcm.edu	37	11	109294535	109294535	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C13orf26	122046	hgsc.bcm.edu	37	13	31540436	31540436	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C2orf71	388939	hgsc.bcm.edu	37	2	29287926	29287927	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C2orf83	56918	hgsc.bcm.edu	37	2	228497787	228497787	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C6orf70	55780	hgsc.bcm.edu	37	6	170179296	170179296	+	Silent	SNP	T	T	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDH1	999	hgsc.bcm.edu	37	16	68844182	68844182	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHEK2	11200	hgsc.bcm.edu	37	22	29091841	29091841	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLK4	57396	hgsc.bcm.edu	37	5	178050273	178050273	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL6A5	256076	hgsc.bcm.edu	37	3	130107952	130107952	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DENND5B	160518	hgsc.bcm.edu	37	12	31542301	31542301	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DPP10	57628	hgsc.bcm.edu	37	2	116520158	116520158	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DST	667	hgsc.bcm.edu	37	6	56497780	56497780	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ENC1	8507	hgsc.bcm.edu	37	5	73931537	73931537	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ERC2	26059	hgsc.bcm.edu	37	3	56026090	56026090	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM183A	440585	hgsc.bcm.edu	37	1	43616454	43616454	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GBA	2629	hgsc.bcm.edu	37	1	155207162	155207162	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPRC5B	51704	hgsc.bcm.edu	37	16	19873180	19873180	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HGC6.3	100128124	hgsc.bcm.edu	37	6	168377219	168377219	+	Missense_Mutation	SNP	T	T	G	rs76543658	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HGC6.3	100128124	hgsc.bcm.edu	37	6	168377220	168377220	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HSF5	124535	hgsc.bcm.edu	37	17	56557477	56557477	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IQSEC2	23096	hgsc.bcm.edu	37	X	53285120	53285120	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITGA9	3680	hgsc.bcm.edu	37	3	37845348	37845348	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITK	3702	hgsc.bcm.edu	37	5	156635914	156635914	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA1211	57482	hgsc.bcm.edu	37	4	57180592	57180592	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA1211	57482	hgsc.bcm.edu	37	4	57180594	57180595	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLF9	687	hgsc.bcm.edu	37	9	73027946	73027946	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LILRB3	11025	hgsc.bcm.edu	37	19	54723085	54723085	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAGI3	260425	hgsc.bcm.edu	37	1	114193691	114193691	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MFSD9	84804	hgsc.bcm.edu	37	2	103353153	103353153	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195507189	195507189	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR10Z1	128368	hgsc.bcm.edu	37	1	158576459	158576459	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDGFRA	5156	hgsc.bcm.edu	37	4	55141097	55141097	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PIK3R4	30849	hgsc.bcm.edu	37	3	130424530	130424530	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRICKLE4	29964	hgsc.bcm.edu	37	6	41754573	41754574	+	In_Frame_Ins	INS	-	-	CTT	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTCH1	5727	hgsc.bcm.edu	37	9	98241415	98241415	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPRH	5794	hgsc.bcm.edu	37	19	55716809	55716809	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RASGRP2	10235	hgsc.bcm.edu	37	11	64503123	64503123	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RBMXL3	139804	hgsc.bcm.edu	37	X	114425207	114425207	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCN3A	6328	hgsc.bcm.edu	37	2	165986535	165986535	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEL1L2	80343	hgsc.bcm.edu	37	20	13850814	13850814	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPOCD1	90853	hgsc.bcm.edu	37	1	32266115	32266115	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ST18	9705	hgsc.bcm.edu	37	8	53092685	53092685	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ST3GAL3	6487	hgsc.bcm.edu	37	1	44360113	44360113	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ST3GAL3	6487	hgsc.bcm.edu	37	1	44386570	44386570	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TBX5	6910	hgsc.bcm.edu	37	12	114793907	114793907	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TFG	10342	hgsc.bcm.edu	37	3	100451383	100451383	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TPRX1	284355	hgsc.bcm.edu	37	19	48305554	48305554	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UHRF1	29128	hgsc.bcm.edu	37	19	4954679	4954680	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDR52	55779	hgsc.bcm.edu	37	3	113127995	113127995	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WT1	7490	hgsc.bcm.edu	37	11	32413592	32413592	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CJ-4637-01A-02D-1386-10	TCGA-CJ-4637-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
