Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ADAM23	8745	hgsc.bcm.edu	37	2	207413075	207413075	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ADH5	128	hgsc.bcm.edu	37	4	99997942	99997942	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AKR1B10	57016	hgsc.bcm.edu	37	7	134217804	134217804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKRD23	200539	hgsc.bcm.edu	37	2	97508243	97508243	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AQPEP	206338	hgsc.bcm.edu	37	5	115327884	115327884	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGAP26	23092	hgsc.bcm.edu	37	5	142150382	142150382	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARHGAP26	23092	hgsc.bcm.edu	37	5	142281604	142281604	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARID1B	57492	hgsc.bcm.edu	37	6	157469827	157469827	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP11C	286410	hgsc.bcm.edu	37	X	138850578	138850578	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATRX	546	hgsc.bcm.edu	37	X	76875909	76875909	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BCL2A1	597	hgsc.bcm.edu	37	15	80253460	80253460	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BRAF	673	hgsc.bcm.edu	37	7	140481416	140481416	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CACNA1C	775	hgsc.bcm.edu	37	12	2675675	2675675	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CATSPERB	79820	hgsc.bcm.edu	37	14	92102834	92102834	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC69	26112	hgsc.bcm.edu	37	5	150581209	150581209	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CD300LB	124599	hgsc.bcm.edu	37	17	72522164	72522164	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CELF3	11189	hgsc.bcm.edu	37	1	151688472	151688472	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CES2	8824	hgsc.bcm.edu	37	16	66973125	66973125	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CHEK2	11200	hgsc.bcm.edu	37	22	29121349	29121349	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL15A1	1306	hgsc.bcm.edu	37	9	101829166	101829166	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CUL9	23113	hgsc.bcm.edu	37	6	43188337	43188337	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DAO	1610	hgsc.bcm.edu	37	12	109290797	109290797	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DLX3	1747	hgsc.bcm.edu	37	17	48069215	48069215	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAJC11	55735	hgsc.bcm.edu	37	1	6704634	6704634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DOCK2	1794	hgsc.bcm.edu	37	5	169145692	169145692	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DPT	1805	hgsc.bcm.edu	37	1	168698362	168698362	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DPYS	1807	hgsc.bcm.edu	37	8	105459696	105459696	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EGFL7	51162	hgsc.bcm.edu	37	9	139563044	139563044	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EIF4G2	1982	hgsc.bcm.edu	37	11	10820873	10820873	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EPHA7	2045	hgsc.bcm.edu	37	6	94066646	94066646	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ERP27	121506	hgsc.bcm.edu	37	12	15087884	15087884	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBXL21	26223	hgsc.bcm.edu	37	5	135276349	135276349	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FIGN	55137	hgsc.bcm.edu	37	2	164468066	164468066	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HGS	9146	hgsc.bcm.edu	37	17	79652641	79652641	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HRH4	59340	hgsc.bcm.edu	37	18	22057427	22057427	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ICAM2	3384	hgsc.bcm.edu	37	17	62082581	62082581	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IMPDH1	3614	hgsc.bcm.edu	37	7	128049498	128049498	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JUNB	3726	hgsc.bcm.edu	37	19	12903494	12903494	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNA4	3739	hgsc.bcm.edu	37	11	30033589	30033589	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCTD2	23510	hgsc.bcm.edu	37	17	73058235	73058235	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDR	3791	hgsc.bcm.edu	37	4	55956163	55956163	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF14	9928	hgsc.bcm.edu	37	1	200587322	200587322	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LAMB4	22798	hgsc.bcm.edu	37	7	107696176	107696176	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LTB4R	1241	hgsc.bcm.edu	37	14	24785139	24785139	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
METT10D	79066	hgsc.bcm.edu	37	17	2323880	2323880	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MLL2	8085	hgsc.bcm.edu	37	12	49436587	49436587	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195506550	195506597	+	In_Frame_Del	DEL	GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG	GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG	-	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG	GGTGGCGTGACCTGTGGATACTGAGGAAGTGTCGGTGACAGGAAGAGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195508479	195508574	+	In_Frame_Del	DEL	ACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATACTGAGGAAGTCTCGGTGACAAGAAGAGGGGTGGTGTC	ACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATACTGAGGAAGTCTCGGTGACAAGAAGAGGGGTGGTGTC	-	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	ACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATACTGAGGAAGTCTCGGTGACAAGAAGAGGGGTGGTGTC	ACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATACTGAGGAAGTCTCGGTGACAAGAAGAGGGGTGGTGTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195509031	195509078	+	In_Frame_Del	DEL	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	-	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	GGTGACAGGAAGAGCGGTGGCCTGACCTGTGGATGCTGAGGAAGTGTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NF1	4763	hgsc.bcm.edu	37	17	29661895	29661895	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NUFIP2	57532	hgsc.bcm.edu	37	17	27613674	27613674	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR13C2	392376	hgsc.bcm.edu	37	9	107367525	107367525	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OSBPL1A	114876	hgsc.bcm.edu	37	18	21897128	21897128	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
P2RX4	5025	hgsc.bcm.edu	37	12	121660766	121660766	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PEG3	5178	hgsc.bcm.edu	37	19	57325755	57325755	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLAU	5328	hgsc.bcm.edu	37	10	75676303	75676303	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLEKHJ1	55111	hgsc.bcm.edu	37	19	2234235	2234235	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPP3CC	5533	hgsc.bcm.edu	37	8	22380232	22380232	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTEN	5728	hgsc.bcm.edu	37	10	89685284	89685284	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RABEP1	9135	hgsc.bcm.edu	37	17	5286419	5286419	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
REN	5972	hgsc.bcm.edu	37	1	204128614	204128614	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SAMHD1	25939	hgsc.bcm.edu	37	20	35547877	35547877	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC25A23	79085	hgsc.bcm.edu	37	19	6444201	6444201	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPCS1	28972	hgsc.bcm.edu	37	3	52741704	52741704	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
THBS1	7057	hgsc.bcm.edu	37	15	39881491	39881491	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TLR4	7099	hgsc.bcm.edu	37	9	120476302	120476302	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TNFRSF10A	8797	hgsc.bcm.edu	37	8	23069654	23069654	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TNKS2	80351	hgsc.bcm.edu	37	10	93604754	93604754	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRIO	7204	hgsc.bcm.edu	37	5	14485224	14485224	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTN	7273	hgsc.bcm.edu	37	2	179473406	179473406	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTYH3	80727	hgsc.bcm.edu	37	7	2698601	2698601	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP32	84669	hgsc.bcm.edu	37	17	58303548	58303548	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP40	55230	hgsc.bcm.edu	37	2	234468567	234468567	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VIPAR	63894	hgsc.bcm.edu	37	14	77916095	77916095	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDR8	49856	hgsc.bcm.edu	37	1	3564112	3564112	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5457-01A-01D-1501-10	TCGA-CZ-5457-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
