Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
APC	324	hgsc.bcm.edu	37	5	112175602	112175602	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARPP19	10776	hgsc.bcm.edu	37	15	52844224	52844224	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C16orf55	124045	hgsc.bcm.edu	37	16	89724745	89724745	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CD274	29126	hgsc.bcm.edu	37	9	5466799	5466799	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CNOT1	23019	hgsc.bcm.edu	37	16	58564211	58564211	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CRB1	23418	hgsc.bcm.edu	37	1	197411309	197411309	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EIF3M	10480	hgsc.bcm.edu	37	11	32610203	32610203	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ETF1	2107	hgsc.bcm.edu	37	5	137848455	137848455	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EYS	346007	hgsc.bcm.edu	37	6	64436568	64436568	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GAA	2548	hgsc.bcm.edu	37	17	78078636	78078637	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GNA14	9630	hgsc.bcm.edu	37	9	80039057	80039057	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GRID2	2895	hgsc.bcm.edu	37	4	93511305	93511305	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KAT5	10524	hgsc.bcm.edu	37	11	65480531	65480531	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF3B	9371	hgsc.bcm.edu	37	20	30914652	30914652	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAGT1	84061	hgsc.bcm.edu	37	X	77150869	77150869	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MARCH10	162333	hgsc.bcm.edu	37	17	60813347	60813347	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MRPS22	56945	hgsc.bcm.edu	37	3	139069896	139069896	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NBEAL2	23218	hgsc.bcm.edu	37	3	47037324	47037324	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NKAIN3	286183	hgsc.bcm.edu	37	8	63831061	63831061	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NT5C3	51251	hgsc.bcm.edu	37	7	33055308	33055308	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NUAK2	81788	hgsc.bcm.edu	37	1	205275383	205275383	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR4K1	79544	hgsc.bcm.edu	37	14	20404413	20404413	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OSBPL11	114885	hgsc.bcm.edu	37	3	125298793	125298793	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAB11FIP3	9727	hgsc.bcm.edu	37	16	532561	532561	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RNF25	64320	hgsc.bcm.edu	37	2	219532832	219532832	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RYR3	6263	hgsc.bcm.edu	37	15	33873834	33873834	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC35A5	55032	hgsc.bcm.edu	37	3	112300127	112300127	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TPRKB	51002	hgsc.bcm.edu	37	2	73961607	73961607	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UNC50	25972	hgsc.bcm.edu	37	2	99232913	99232913	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP24	23358	hgsc.bcm.edu	37	1	55558494	55558494	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF595	152687	hgsc.bcm.edu	37	4	86032	86032	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CZ-5458-01A-01D-1501-10	TCGA-CZ-5458-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
