Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACTN1	87	hgsc.bcm.edu	37	14	69378925	69378925	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANK3	288	hgsc.bcm.edu	37	10	61829504	61829504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AQPEP	206338	hgsc.bcm.edu	37	5	115335572	115335572	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP11A	23250	hgsc.bcm.edu	37	13	113512560	113512560	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C7orf58	79974	hgsc.bcm.edu	37	7	120782027	120782027	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC89	220388	hgsc.bcm.edu	37	11	85396982	85396982	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CNOT3	4849	hgsc.bcm.edu	37	19	54646887	54646887	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CNTNAP5	129684	hgsc.bcm.edu	37	2	125555870	125555870	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CUBN	8029	hgsc.bcm.edu	37	10	16945996	16945996	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DEFB114	245928	hgsc.bcm.edu	37	6	49931783	49931783	+	Silent	SNP	A	A	G	rs73737276	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DMD	1756	hgsc.bcm.edu	37	X	32328302	32328302	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAH3	55567	hgsc.bcm.edu	37	16	21053411	21053411	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ECD	11319	hgsc.bcm.edu	37	10	74899074	74899074	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EWSR1	2130	hgsc.bcm.edu	37	22	29695685	29695685	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBXW7	55294	hgsc.bcm.edu	37	4	153245403	153245403	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GCN1L1	10985	hgsc.bcm.edu	37	12	120614003	120614003	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HERC3	8916	hgsc.bcm.edu	37	4	89583644	89583644	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
JAKMIP1	152789	hgsc.bcm.edu	37	4	6066628	6066628	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM5C	8242	hgsc.bcm.edu	37	X	53239756	53239756	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LIPI	149998	hgsc.bcm.edu	37	21	15554165	15554165	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAGI3	260425	hgsc.bcm.edu	37	1	114193692	114193692	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MMP20	9313	hgsc.bcm.edu	37	11	102465487	102465487	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC17	140453	hgsc.bcm.edu	37	7	100677959	100677959	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NAT8B	51471	hgsc.bcm.edu	37	2	73928184	73928184	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NTN1	9423	hgsc.bcm.edu	37	17	9142994	9142994	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR10J3	441911	hgsc.bcm.edu	37	1	159283829	159283829	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PHF16	9767	hgsc.bcm.edu	37	X	46917619	46917619	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRKCI	5584	hgsc.bcm.edu	37	3	170009727	170009727	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTEN	5728	hgsc.bcm.edu	37	10	89692888	89692888	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTH2R	5746	hgsc.bcm.edu	37	2	209358369	209358369	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RHOQ	23433	hgsc.bcm.edu	37	2	46808105	46808105	+	Silent	SNP	C	C	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RIBC2	26150	hgsc.bcm.edu	37	22	45813560	45813560	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RTCD1	8634	hgsc.bcm.edu	37	1	100736139	100736139	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RYR3	6263	hgsc.bcm.edu	37	15	34032131	34032131	+	Silent	SNP	G	G	A	rs41279212	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SBF1	6305	hgsc.bcm.edu	37	22	50885814	50885814	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCUBE1	80274	hgsc.bcm.edu	37	22	43654262	43654262	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETD2	29072	hgsc.bcm.edu	37	3	47139504	47139505	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SIGLEC6	946	hgsc.bcm.edu	37	19	52031043	52031043	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC16A4	9122	hgsc.bcm.edu	37	1	110921750	110921750	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLCO1B1	10599	hgsc.bcm.edu	37	12	21358851	21358851	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMC3	9126	hgsc.bcm.edu	37	10	112361507	112361507	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPINT1	6692	hgsc.bcm.edu	37	15	41145781	41145781	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM120B	144404	hgsc.bcm.edu	37	12	122186268	122186268	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMPRSS13	84000	hgsc.bcm.edu	37	11	117789147	117789147	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRIM4	89122	hgsc.bcm.edu	37	7	99489819	99489819	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TROVE2	6738	hgsc.bcm.edu	37	1	193038546	193038546	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TSC1	7248	hgsc.bcm.edu	37	9	135802613	135802613	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TSHZ2	128553	hgsc.bcm.edu	37	20	51872336	51872336	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTN	7273	hgsc.bcm.edu	37	2	179543217	179543217	+	Silent	SNP	C	C	T	rs35112591	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UBA6	55236	hgsc.bcm.edu	37	4	68500171	68500171	+	Silent	SNP	A	A	G	rs10008910	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP22	23326	hgsc.bcm.edu	37	17	20922454	20922454	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VCX2	51480	hgsc.bcm.edu	37	X	8138159	8138164	+	In_Frame_Del	DEL	CTTCCA	CTTCCA	-	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	CTTCCA	CTTCCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDR44	54521	hgsc.bcm.edu	37	X	117576248	117576248	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
XKR3	150165	hgsc.bcm.edu	37	22	17288789	17288789	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF584	201514	hgsc.bcm.edu	37	19	58929020	58929020	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF615	284370	hgsc.bcm.edu	37	19	52497836	52497836	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5464-01A-01D-1501-10	TCGA-CZ-5464-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
