Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA12	26154	hgsc.bcm.edu	37	2	215876834	215876834	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ABCA7	10347	hgsc.bcm.edu	37	19	1044699	1044699	+	Missense_Mutation	SNP	G	G	A	rs35732553	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AEBP1	165	hgsc.bcm.edu	37	7	44153693	44153693	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AEBP1	165	hgsc.bcm.edu	37	7	44153704	44153704	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANAPC1	64682	hgsc.bcm.edu	37	2	112539971	112539971	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ANKRD56	345079	hgsc.bcm.edu	37	4	77818104	77818118	+	In_Frame_Del	DEL	TGCAGGGTCGAATAA	TGCAGGGTCGAATAA	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	TGCAGGGTCGAATAA	TGCAGGGTCGAATAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
AP3B2	8120	hgsc.bcm.edu	37	15	83349701	83349701	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BAIAP2L2	80115	hgsc.bcm.edu	37	22	38482353	38482394	+	In_Frame_Del	DEL	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	TGCGGGAGCGGGACTGGCCATCCCAGTACTCCGAGGGTGCTA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BCL11A	53335	hgsc.bcm.edu	37	2	60780394	60780394	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BIRC6	57448	hgsc.bcm.edu	37	2	32605236	32605236	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BMS1	9790	hgsc.bcm.edu	37	10	43318590	43318590	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C16orf62	57020	hgsc.bcm.edu	37	16	19641134	19641134	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C1orf101	257044	hgsc.bcm.edu	37	1	244715945	244715945	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C2orf27A	29798	hgsc.bcm.edu	37	2	132509139	132509139	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C5	727	hgsc.bcm.edu	37	9	123719562	123719562	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CADM1	23705	hgsc.bcm.edu	37	11	115375030	115375035	+	In_Frame_Del	DEL	AGCCGG	AGCCGG	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	AGCCGG	AGCCGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCND2	894	hgsc.bcm.edu	37	12	4385304	4385304	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCNJ	54619	hgsc.bcm.edu	37	10	97810064	97810064	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCPG1	9236	hgsc.bcm.edu	37	15	55669238	55669238	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CFHR3	10878	hgsc.bcm.edu	37	1	196749100	196749100	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLASP1	23332	hgsc.bcm.edu	37	2	122206531	122206531	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COASY	80347	hgsc.bcm.edu	37	17	40715086	40715086	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
COL9A2	1298	hgsc.bcm.edu	37	1	40777201	40777201	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CRIPAK	285464	hgsc.bcm.edu	37	4	1388594	1388622	+	Frame_Shift_Del	DEL	CACGTGCCCATGTGGAGTGCCCGCCTGCT	CACGTGCCCATGTGGAGTGCCCGCCTGCT	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	CACGTGCCCATGTGGAGTGCCCGCCTGCT	CACGTGCCCATGTGGAGTGCCCGCCTGCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CSF2RA	1438	hgsc.bcm.edu	37	X	1413322	1413322	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAH2	146754	hgsc.bcm.edu	37	17	7727491	7727491	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAH9	1770	hgsc.bcm.edu	37	17	11554600	11554600	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DRD3	1814	hgsc.bcm.edu	37	3	113858457	113858457	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DSPP	1834	hgsc.bcm.edu	37	4	88537288	88537288	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EFEMP2	30008	hgsc.bcm.edu	37	11	65635794	65635794	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EIF2AK2	5610	hgsc.bcm.edu	37	2	37347219	37347219	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ENPP3	5169	hgsc.bcm.edu	37	6	131971248	131971248	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ERBB4	2066	hgsc.bcm.edu	37	2	212587123	212587123	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM171B	165215	hgsc.bcm.edu	37	2	187559029	187559030	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FCGR3B	2215	hgsc.bcm.edu	37	1	161599725	161599725	+	Silent	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FER1L6	654463	hgsc.bcm.edu	37	8	125052244	125052244	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPRIN1	114787	hgsc.bcm.edu	37	5	176026122	176026134	+	Frame_Shift_Del	DEL	CAAAGACCCAGGA	CAAAGACCCAGGA	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	CAAAGACCCAGGA	CAAAGACCCAGGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HNRNPA0	10949	hgsc.bcm.edu	37	5	137088945	137088946	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IGSF10	285313	hgsc.bcm.edu	37	3	151161389	151161389	+	Silent	SNP	T	T	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IL25	64806	hgsc.bcm.edu	37	14	23842465	23842465	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IQUB	154865	hgsc.bcm.edu	37	7	123119948	123119948	+	Silent	SNP	A	A	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITGB6	3694	hgsc.bcm.edu	37	2	161051923	161051923	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNJ12	3768	hgsc.bcm.edu	37	17	21319087	21319087	+	Missense_Mutation	SNP	G	G	A	rs75029097	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNJ12	3768	hgsc.bcm.edu	37	17	21319110	21319110	+	Silent	SNP	G	G	A	rs77283567	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM6A	7403	hgsc.bcm.edu	37	X	44879876	44879878	+	In_Frame_Del	DEL	GGT	GGT	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	GGT	GGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA1751	85452	hgsc.bcm.edu	37	1	1887092	1887092	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA1984	84960	hgsc.bcm.edu	37	9	139697161	139697161	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP4-1	85285	hgsc.bcm.edu	37	17	39340796	39340852	+	Frame_Shift_Del	DEL	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	CGGCAGCAGCTGGACATACCACAGCTGGGGTGGCAGGTGGTCTGACAGCAGAGTGGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71276876	71276876	+	Silent	SNP	A	A	G	rs12788123	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRTAP5-10	387273	hgsc.bcm.edu	37	11	71276939	71276939	+	Silent	SNP	G	G	A	rs111317671	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
L1TD1	54596	hgsc.bcm.edu	37	1	62675645	62675674	+	In_Frame_Del	DEL	CCTCAGGGCTGGAGGAGGAGGAGGAAGAGC	CCTCAGGGCTGGAGGAGGAGGAGGAAGAGC	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	CCTCAGGGCTGGAGGAGGAGGAGGAAGAGC	CCTCAGGGCTGGAGGAGGAGGAGGAAGAGC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LETMD1	25875	hgsc.bcm.edu	37	12	51449970	51449970	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LPHN3	23284	hgsc.bcm.edu	37	4	62813877	62813877	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRPPRC	10128	hgsc.bcm.edu	37	2	44209499	44209499	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRRK2	120892	hgsc.bcm.edu	37	12	40689408	40689408	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LTN1	26046	hgsc.bcm.edu	37	21	30339421	30339422	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MET	4233	hgsc.bcm.edu	37	7	116411638	116411638	+	Silent	SNP	C	C	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MIOX	55586	hgsc.bcm.edu	37	22	50927866	50927867	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MLL	4297	hgsc.bcm.edu	37	11	118390456	118390456	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MLLT3	4300	hgsc.bcm.edu	37	9	20414343	20414343	+	Silent	SNP	A	A	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC2	4583	hgsc.bcm.edu	37	11	1092095	1092095	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195506549	195506549	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC4	4585	hgsc.bcm.edu	37	3	195509563	195509563	+	Missense_Mutation	SNP	A	A	T	rs28605870	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYO15A	51168	hgsc.bcm.edu	37	17	18055188	18055188	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYO7A	4647	hgsc.bcm.edu	37	11	76895771	76895792	+	Frame_Shift_Del	DEL	GGAGGCGGGGACACCAGGGCCT	GGAGGCGGGGACACCAGGGCCT	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	GGAGGCGGGGACACCAGGGCCT	GGAGGCGGGGACACCAGGGCCT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OCIAD2	132299	hgsc.bcm.edu	37	4	48887578	48887578	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR2L8	391190	hgsc.bcm.edu	37	1	248112361	248112361	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PARP14	54625	hgsc.bcm.edu	37	3	122437546	122437546	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52696199	52696199	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDH10	57575	hgsc.bcm.edu	37	4	134073481	134073481	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCSK9	255738	hgsc.bcm.edu	37	1	55505552	55505553	+	In_Frame_Ins	INS	-	-	CTG	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDLIM2	64236	hgsc.bcm.edu	37	8	22452072	22452072	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDZD2	23037	hgsc.bcm.edu	37	5	32090803	32090803	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PITPNM1	9600	hgsc.bcm.edu	37	11	67265791	67265791	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PKHD1L1	93035	hgsc.bcm.edu	37	8	110460595	110460595	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PORCN	64840	hgsc.bcm.edu	37	X	48378842	48378842	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPP6R1	22870	hgsc.bcm.edu	37	19	55752433	55752436	+	Frame_Shift_Del	DEL	ATGG	ATGG	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	ATGG	ATGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRICKLE1	144165	hgsc.bcm.edu	37	12	42853975	42853975	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRRC2B	84726	hgsc.bcm.edu	37	9	134350077	134350077	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RANBP6	26953	hgsc.bcm.edu	37	9	6013478	6013478	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RFX8	731220	hgsc.bcm.edu	37	2	102019046	102019047	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RGMA	56963	hgsc.bcm.edu	37	15	93616253	93616253	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RHOJ	57381	hgsc.bcm.edu	37	14	63735887	63735887	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RMND1	55005	hgsc.bcm.edu	37	6	151726969	151726969	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SAAL1	113174	hgsc.bcm.edu	37	11	18127558	18127559	+	In_Frame_Ins	INS	-	-	CGG	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SC4MOL	6307	hgsc.bcm.edu	37	4	166254730	166254730	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCN4A	6329	hgsc.bcm.edu	37	17	62029159	62029159	+	Silent	SNP	G	G	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCRN1	9805	hgsc.bcm.edu	37	7	29980329	29980330	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEC14L5	9717	hgsc.bcm.edu	37	16	5040871	5040871	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC15A3	51296	hgsc.bcm.edu	37	11	60711236	60711236	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC5A12	159963	hgsc.bcm.edu	37	11	26695022	26695022	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SP1	6667	hgsc.bcm.edu	37	12	53776832	53776832	+	Silent	SNP	T	T	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPATA17	128153	hgsc.bcm.edu	37	1	217947704	217947704	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SRGAP2	23380	hgsc.bcm.edu	37	1	206516309	206516309	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TBC1D22B	55633	hgsc.bcm.edu	37	6	37250060	37250060	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TBP	6908	hgsc.bcm.edu	37	6	170871040	170871040	+	Silent	SNP	A	A	G	rs55736770	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TBP	6908	hgsc.bcm.edu	37	6	170871046	170871046	+	Silent	SNP	A	A	G	rs62430309	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TBP	6908	hgsc.bcm.edu	37	6	170871049	170871049	+	Silent	SNP	G	G	A	rs56241301	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TBP	6908	hgsc.bcm.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A	rs112083427	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TBP	6908	hgsc.bcm.edu	37	6	170871055	170871055	+	Silent	SNP	G	G	A	rs112928724	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TBP	6908	hgsc.bcm.edu	37	6	170871097	170871097	+	Silent	SNP	G	G	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TCHH	7062	hgsc.bcm.edu	37	1	152084694	152084696	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	CTC	CTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMTC3	160418	hgsc.bcm.edu	37	12	88560118	88560118	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMTC3	160418	hgsc.bcm.edu	37	12	88584363	88584363	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRIL	9865	hgsc.bcm.edu	37	7	28997596	28997597	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRIM11	81559	hgsc.bcm.edu	37	1	228582654	228582654	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TRMT2B	79979	hgsc.bcm.edu	37	X	100297051	100297051	+	Silent	SNP	T	T	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTC3	7267	hgsc.bcm.edu	37	21	38539860	38539860	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TTN	7273	hgsc.bcm.edu	37	2	179569401	179569401	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
UHRF1BP1L	23074	hgsc.bcm.edu	37	12	100452921	100452921	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
URM1	81605	hgsc.bcm.edu	37	9	131151698	131151698	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP24	23358	hgsc.bcm.edu	37	1	55642115	55642115	+	Silent	SNP	A	A	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP6NL	9712	hgsc.bcm.edu	37	10	11543102	11543102	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10191480	10191480	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10191480	10191480	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZC3HAV1	56829	hgsc.bcm.edu	37	7	138764225	138764225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF132	7691	hgsc.bcm.edu	37	19	58948571	58948571	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF507	22847	hgsc.bcm.edu	37	19	32843992	32843992	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-CZ-5465-01A-01D-1806-10	TCGA-CZ-5465-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
