Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AARS	16	broad.mit.edu	37	16	70301574	70301574	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42850678	42850678	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANGEL2	90806	broad.mit.edu	37	1	213178426	213178426	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128840160	128840160	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42618092	42618092	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AVIL	10677	broad.mit.edu	37	12	58207197	58207197	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BUB1B	701	broad.mit.edu	37	15	40476084	40476084	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C14orf115	55237	broad.mit.edu	37	14	74823530	74823530	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1QTNF7	114905	broad.mit.edu	37	4	15437360	15437360	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C20orf4	25980	broad.mit.edu	37	20	34832710	34832710	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C3orf38	285237	broad.mit.edu	37	3	88199301	88199301	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57351601	57351601	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48677037	48677037	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC96	257236	broad.mit.edu	37	4	7044507	7044509	+	In_Frame_Del	DEL	CTC	-	-	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	CTC	CTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63547747	63547747	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHST10	9486	broad.mit.edu	37	2	101009797	101009797	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126682552	126682552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DAPL1	92196	broad.mit.edu	37	2	159672329	159672329	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDX60L	91351	broad.mit.edu	37	4	169392986	169392986	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	355983	355983	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78477314	78477314	+	Missense_Mutation	SNP	C	A	A	rs77132068	by1000genomes	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF1	10209	broad.mit.edu	37	17	39846195	39846195	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ENPP4	22875	broad.mit.edu	37	6	46108939	46108940	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5397069	5397069	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPS15L1	58513	broad.mit.edu	37	19	16539554	16539554	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150404112	150404112	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FOXRED2	80020	broad.mit.edu	37	22	36892016	36892016	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GLIS2	84662	broad.mit.edu	37	16	4383391	4383392	+	In_Frame_Ins	INS	-	TTT	TTT	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GPR179	440435	broad.mit.edu	37	17	36484110	36484110	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRSF1	2926	broad.mit.edu	37	4	71693661	71693661	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GUSB	2990	broad.mit.edu	37	7	65429390	65429396	+	Frame_Shift_Del	DEL	TGGTACT	-	-	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	TGGTACT	TGGTACT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245022119	245022119	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSD17B2	3294	broad.mit.edu	37	16	82131925	82131925	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HTR7	3363	broad.mit.edu	37	10	92616929	92616929	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156509711	156509711	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154523863	154523863	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138602905	138602905	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF7	374654	broad.mit.edu	37	15	90185512	90185512	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLF13	51621	broad.mit.edu	37	15	31664225	31664225	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38955746	38955746	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP1-3	81850	broad.mit.edu	37	17	39190847	39190847	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LARS2	23395	broad.mit.edu	37	3	45537772	45537772	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LDHAL6B	92483	broad.mit.edu	37	15	59499808	59499808	+	Silent	SNP	T	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRDD	55367	broad.mit.edu	37	11	804239	804239	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRIG3	121227	broad.mit.edu	37	12	59284527	59284527	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCM2	4171	broad.mit.edu	37	3	127338092	127338092	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6266849	6266849	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6266851	6266851	+	Nonsense_Mutation	SNP	C	G	G	rs121434305	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151842348	151842348	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MPRIP	23164	broad.mit.edu	37	17	17064559	17064559	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTDH	92140	broad.mit.edu	37	8	98731381	98731381	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77798620	77798620	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEU1	4758	broad.mit.edu	37	6	31829196	31829196	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOTCH3	4854	broad.mit.edu	37	19	15302555	15302555	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NUMA1	4926	broad.mit.edu	37	11	71733393	71733393	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16910759	16910759	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78369474	78369474	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PAPD4	167153	broad.mit.edu	37	5	78975478	78975478	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDIA6	10130	broad.mit.edu	37	2	10927548	10927548	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51637542	51637542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLEKHA3	65977	broad.mit.edu	37	2	179360386	179360386	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POC1B	282809	broad.mit.edu	37	12	89818965	89818965	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48840368	48840368	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18725291	18725291	+	Silent	SNP	T	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38945658	38945658	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF6	6049	broad.mit.edu	37	13	26789216	26789216	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RORA	6095	broad.mit.edu	37	15	60806849	60806849	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RPS19	6223	broad.mit.edu	37	19	42364899	42364899	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SAAL1	113174	broad.mit.edu	37	11	18124827	18124828	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SH2D2A	9047	broad.mit.edu	37	1	156779265	156779265	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SH2D6	284948	broad.mit.edu	37	2	85662808	85662808	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SIK3	23387	broad.mit.edu	37	11	116968939	116968939	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1076852	1076852	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC12A8	84561	broad.mit.edu	37	3	124810981	124810982	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC9A8	23315	broad.mit.edu	37	20	48479596	48479596	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98817000	98817000	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNX14	57231	broad.mit.edu	37	6	86223568	86223568	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7716068	7716068	+	Silent	SNP	C	T	T	rs113593926	by1000genomes	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYCE1	93426	broad.mit.edu	37	10	135370646	135370646	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123984267	123984267	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TAF5	6877	broad.mit.edu	37	10	105128210	105128210	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TCOF1	6949	broad.mit.edu	37	5	149769510	149769510	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TIPIN	54962	broad.mit.edu	37	15	66641437	66641437	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMC5	79838	broad.mit.edu	37	16	19488785	19488785	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNFRSF11B	4982	broad.mit.edu	37	8	119938760	119938760	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNNT2	7139	broad.mit.edu	37	1	201335996	201335996	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38357441	38357441	+	Silent	SNP	A	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TSNAX	7257	broad.mit.edu	37	1	231700333	231700333	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179584535	179584535	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42541500	42541500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42541661	42541661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103341320	103341324	+	Frame_Shift_Del	DEL	TGTTA	-	-	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	TGTTA	TGTTA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54307905	54307905	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UTP11L	51118	broad.mit.edu	37	1	38484984	38484984	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VARS2	57176	broad.mit.edu	37	6	30890728	30890728	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VARS2	57176	broad.mit.edu	37	6	30890912	30890912	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VPS33A	65082	broad.mit.edu	37	12	122723269	122723269	+	Silent	SNP	G	T	T	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WBP11	51729	broad.mit.edu	37	12	14947533	14947533	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618806	77618806	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF193	7746	broad.mit.edu	37	6	28200339	28200339	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF474	133923	broad.mit.edu	37	5	121488728	121488728	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF484	83744	broad.mit.edu	37	9	95610604	95610604	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF789	285989	broad.mit.edu	37	7	99084134	99084134	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57768699	57768699	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3313-01	TCGA-A3-3313-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
