Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA4	24	broad.mit.edu	37	1	94508386	94508386	+	Missense_Mutation	SNP	C	T	T	rs61751398	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ABCF3	55324	broad.mit.edu	37	3	183908978	183908978	+	Missense_Mutation	SNP	G	C	C	rs75824087	by1000genomes	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALDH3A2	224	broad.mit.edu	37	17	19568345	19568345	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKLE1	126549	broad.mit.edu	37	19	17394594	17394594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKRD11	29123	broad.mit.edu	37	16	89348713	89348713	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANO10	55129	broad.mit.edu	37	3	43641990	43641990	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
APPBP2	10513	broad.mit.edu	37	17	58541434	58541434	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156910115	156910115	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGEF18	23370	broad.mit.edu	37	19	7534857	7534857	+	Silent	SNP	G	A	A	rs111706888	by1000genomes	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASH2L	9070	broad.mit.edu	37	8	37986430	37986430	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP6V0A2	23545	broad.mit.edu	37	12	124229308	124229308	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP6V0A2	23545	broad.mit.edu	37	12	124233198	124233198	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP7B	540	broad.mit.edu	37	13	52524268	52524268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BCOR	54880	broad.mit.edu	37	X	39916518	39916518	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BMP15	9210	broad.mit.edu	37	X	50659505	50659505	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921062	24921062	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6orf26	401251	broad.mit.edu	37	6	31732097	31732097	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6orf58	352999	broad.mit.edu	37	6	127912719	127912719	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD207	50489	broad.mit.edu	37	2	71060832	71060832	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHML	1122	broad.mit.edu	37	1	241799029	241799029	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CIAPIN1	57019	broad.mit.edu	37	16	57464248	57464248	+	Silent	SNP	G	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CMA1	1215	broad.mit.edu	37	14	24974817	24974817	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNTROB	116840	broad.mit.edu	37	17	7836448	7836448	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	110223080	110223080	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207641950	207641950	+	Missense_Mutation	SNP	C	T	T	rs75282758	by1000genomes	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSRNP3	80034	broad.mit.edu	37	2	166451625	166451625	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31632889	31632889	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20948142	20948142	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56394398	56394398	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
E2F2	1870	broad.mit.edu	37	1	23847554	23847554	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ESYT3	83850	broad.mit.edu	37	3	138176419	138176419	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EVPL	2125	broad.mit.edu	37	17	74019710	74019710	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154194406	154194406	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM151A	338094	broad.mit.edu	37	1	55085646	55085646	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99038038	99038038	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152284408	152284408	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152324064	152324064	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GALNT5	11227	broad.mit.edu	37	2	158156095	158156095	+	Missense_Mutation	SNP	A	C	C	rs61748238	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16254119	16254119	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GAN	8139	broad.mit.edu	37	16	81411113	81411113	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GJB4	127534	broad.mit.edu	37	1	35227239	35227239	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GLG1	2734	broad.mit.edu	37	16	74640954	74640954	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GLT6D1	360203	broad.mit.edu	37	9	138516189	138516189	+	Silent	SNP	G	A	A	rs117957513	by1000genomes	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GOLGA5	9950	broad.mit.edu	37	14	93301996	93301996	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HDAC6	10013	broad.mit.edu	37	X	48675025	48675025	+	Silent	SNP	T	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HLA-DMB	3109	broad.mit.edu	37	6	32906638	32906638	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IBSP	3381	broad.mit.edu	37	4	88732921	88732921	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IL1R2	7850	broad.mit.edu	37	2	102626054	102626054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
INTS7	25896	broad.mit.edu	37	1	212118313	212118313	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15648309	15648309	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCTD19	146212	broad.mit.edu	37	16	67328054	67328054	+	Silent	SNP	C	A	A	rs75093327	by1000genomes	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDM3A	55818	broad.mit.edu	37	2	86693955	86693955	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10610550	10610550	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP26-1	388818	broad.mit.edu	37	21	31692339	31692339	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LANCL1	10314	broad.mit.edu	37	2	211306106	211306106	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LIMCH1	22998	broad.mit.edu	37	4	41664926	41664926	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LNX1	84708	broad.mit.edu	37	4	54343069	54343069	+	Silent	SNP	T	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LONRF1	91694	broad.mit.edu	37	8	12594233	12594233	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRN3	54674	broad.mit.edu	37	7	110764652	110764652	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LTK	4058	broad.mit.edu	37	15	41796315	41796315	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MARK2	2011	broad.mit.edu	37	11	63668049	63668049	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MGST2	4258	broad.mit.edu	37	4	140624656	140624656	+	Missense_Mutation	SNP	T	C	C	rs116372322	by1000genomes	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168265353	168265353	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLST8	64223	broad.mit.edu	37	16	2258327	2258327	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MPHOSPH9	10198	broad.mit.edu	37	12	123687822	123687822	+	Missense_Mutation	SNP	G	A	A	rs117059955	by1000genomes	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MSI1	4440	broad.mit.edu	37	12	120791177	120791177	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100679407	100679407	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYO9A	4649	broad.mit.edu	37	15	72122490	72122490	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYST4	23522	broad.mit.edu	37	10	76744912	76744912	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAV1	89796	broad.mit.edu	37	1	201777257	201777257	+	Silent	SNP	C	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NEFM	4741	broad.mit.edu	37	8	24771441	24771441	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77246369	77246369	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NR2C1	7181	broad.mit.edu	37	12	95456371	95456371	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NWD1	284434	broad.mit.edu	37	19	16918593	16918593	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR52A5	390054	broad.mit.edu	37	11	5153812	5153812	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PARN	5073	broad.mit.edu	37	16	14540919	14540919	+	Missense_Mutation	SNP	C	T	T	rs35722504	byFrequency	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52584496	52584496	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PER3	8863	broad.mit.edu	37	1	7887517	7887517	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47545670	47545670	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLAU	5328	broad.mit.edu	37	10	75672049	75672049	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POPDC2	64091	broad.mit.edu	37	3	119378938	119378938	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPAN-P2RY11	692312	broad.mit.edu	37	19	10224885	10224885	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKCG	5582	broad.mit.edu	37	19	54401765	54401765	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRMT7	54496	broad.mit.edu	37	16	68373228	68373228	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1559855	1559855	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PSMA6	5687	broad.mit.edu	37	14	35777271	35777271	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101011492	101011492	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RHOT2	89941	broad.mit.edu	37	16	720501	720501	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78318686	78318686	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCAND3	114821	broad.mit.edu	37	6	28543407	28543407	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEC22C	9117	broad.mit.edu	37	3	42602625	42602625	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SEC24B	10427	broad.mit.edu	37	4	110433199	110433199	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95033435	95033435	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SERPING1	710	broad.mit.edu	37	11	57367609	57367609	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETD5	55209	broad.mit.edu	37	3	9470656	9470656	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SF3B4	10262	broad.mit.edu	37	1	149895521	149895521	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70333578	70333578	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70585379	70585379	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMAD9	4093	broad.mit.edu	37	13	37453744	37453744	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SMARCE1	6605	broad.mit.edu	37	17	38792655	38792655	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SNRNP40	9410	broad.mit.edu	37	1	31769513	31769513	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPANXC	64663	broad.mit.edu	37	X	140336584	140336584	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142795496	142795496	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPRYD3	84926	broad.mit.edu	37	12	53468971	53468971	+	Silent	SNP	G	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41077959	41077959	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104149153	104149153	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TDRD5	163589	broad.mit.edu	37	1	179604987	179604987	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TGFBR2	7048	broad.mit.edu	37	3	30713834	30713834	+	Missense_Mutation	SNP	G	T	T	rs35766612	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TM4SF18	116441	broad.mit.edu	37	3	149048180	149048180	+	Silent	SNP	C	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMCO7	79613	broad.mit.edu	37	16	68894024	68894024	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TP53BP1	7158	broad.mit.edu	37	15	43769851	43769851	+	Missense_Mutation	SNP	A	G	G	rs61751060	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113722405	113722405	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TPH2	121278	broad.mit.edu	37	12	72366306	72366306	+	Missense_Mutation	SNP	C	T	T	rs17110563	byFrequency	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TXNDC5	81567	broad.mit.edu	37	6	7889025	7889025	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76803218	76803218	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101685524	101685524	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144832189	144832189	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188227	10188228	+	Frame_Shift_Del	DEL	AC	-	-	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WDTC1	23038	broad.mit.edu	37	1	27623580	27623580	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF114	163071	broad.mit.edu	37	19	48789346	48789346	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF418	147686	broad.mit.edu	37	19	58438717	58438717	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40542188	40542188	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3324-01	TCGA-A3-3324-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
