Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AQP9	366	broad.mit.edu	37	15	58471498	58471498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATF7IP	55729	broad.mit.edu	37	12	14578241	14578241	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP13A3	79572	broad.mit.edu	37	3	194149610	194149610	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99641544	99641546	+	In_Frame_Del	DEL	CTC	-	-	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	CTC	CTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C14orf126	112487	broad.mit.edu	37	14	31917639	31917639	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf156	92342	broad.mit.edu	37	1	169762230	169762230	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C3orf63	23272	broad.mit.edu	37	3	56667576	56667576	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C6orf167	253714	broad.mit.edu	37	6	97702455	97702455	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CD101	9398	broad.mit.edu	37	1	117564261	117564261	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CHAF1A	10036	broad.mit.edu	37	19	4408962	4408962	+	Missense_Mutation	SNP	G	T	T	rs61729782	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CTGF	1490	broad.mit.edu	37	6	132270523	132270523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CYP8B1	1582	broad.mit.edu	37	3	42917124	42917124	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59835514	59835514	+	Silent	SNP	A	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DIAPH2	1730	broad.mit.edu	37	X	96369939	96369939	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32862975	32862975	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102431128	102431132	+	Frame_Shift_Del	DEL	CTGCG	-	-	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	CTGCG	CTGCG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93210026	93210026	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EHBP1	23301	broad.mit.edu	37	2	63169917	63169917	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120801706	120801706	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF3A	8661	broad.mit.edu	37	10	120801712	120801712	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EIF5A	1984	broad.mit.edu	37	17	7214802	7214802	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ELOVL2	54898	broad.mit.edu	37	6	11005769	11005769	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FNIP2	57600	broad.mit.edu	37	4	159750366	159750366	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
JOSD2	126119	broad.mit.edu	37	19	51010902	51010902	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIF26A	26153	broad.mit.edu	37	14	104643367	104643367	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210561004	210561004	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1793404	1793404	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MBD5	55777	broad.mit.edu	37	2	149227852	149227852	+	Silent	SNP	T	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MFHAS1	9258	broad.mit.edu	37	8	8749927	8749927	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46256718	46256718	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOL10	79954	broad.mit.edu	37	2	10811743	10811743	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52682446	52682446	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLIN4	729359	broad.mit.edu	37	19	4511539	4511539	+	Missense_Mutation	SNP	C	G	G	rs111868968	by1000genomes	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
POM121C	100101267	broad.mit.edu	37	7	75066894	75066894	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRPF31	26121	broad.mit.edu	37	19	54625914	54625914	+	Silent	SNP	A	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
R3HDML	140902	broad.mit.edu	37	20	42965937	42965937	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RBM12	10137	broad.mit.edu	37	20	34242653	34242653	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166898839	166898839	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SFRS2IP	9169	broad.mit.edu	37	12	46328263	46328263	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SH3TC1	54436	broad.mit.edu	37	4	8224578	8224578	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SIRPD	128646	broad.mit.edu	37	20	1532510	1532510	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121647359	121647359	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC25A20	788	broad.mit.edu	37	3	48900024	48900024	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC38A9	153129	broad.mit.edu	37	5	54965131	54965131	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC46A3	283537	broad.mit.edu	37	13	29287320	29287320	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40342426	40342426	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SRGAP1	57522	broad.mit.edu	37	12	64536075	64536075	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYT7	9066	broad.mit.edu	37	11	61323583	61323583	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33467768	33467768	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TFDP2	7029	broad.mit.edu	37	3	141697381	141697381	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476405	120476405	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TMEM206	55248	broad.mit.edu	37	1	212538685	212538685	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRIM32	22954	broad.mit.edu	37	9	119460981	119460981	+	Silent	SNP	T	C	C	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TUFM	7284	broad.mit.edu	37	16	28857318	28857318	+	Silent	SNP	G	A	A	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UGT2B11	10720	broad.mit.edu	37	4	70066177	70066177	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144806603	144806603	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VAV2	7410	broad.mit.edu	37	9	136642527	136642527	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183794	10183794	+	Nonsense_Mutation	SNP	G	A	A	rs119103277	unknown	TCGA-A3-3373-01	TCGA-A3-3373-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
