Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACADM	34	hgsc.bcm.edu	37	1	76226977	76226977	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ADCK1	57143	hgsc.bcm.edu	37	14	78365584	78365584	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BANK1	55024	hgsc.bcm.edu	37	4	102965031	102965031	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BTG4	54766	hgsc.bcm.edu	37	11	111368759	111368759	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BTNL8	79908	hgsc.bcm.edu	37	5	180377117	180377117	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C2orf39	92749	hgsc.bcm.edu	37	2	26647271	26647271	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDCP2	200008	hgsc.bcm.edu	37	1	54605318	54605319	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CREBBP	1387	hgsc.bcm.edu	37	16	3794908	3794908	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CYB5R1	51706	hgsc.bcm.edu	37	1	202932810	202932810	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ELL2	22936	hgsc.bcm.edu	37	5	95242241	95242241	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HEATR1	55127	hgsc.bcm.edu	37	1	236740185	236740185	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HERC2	8924	hgsc.bcm.edu	37	15	28515959	28515959	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCTD18	130535	hgsc.bcm.edu	37	2	201354938	201354945	+	Frame_Shift_Del	DEL	GGCGCGGT	GGCGCGGT	-	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	GGCGCGGT	GGCGCGGT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAK16	84549	hgsc.bcm.edu	37	8	33356081	33356081	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR14C36	127066	hgsc.bcm.edu	37	1	248512740	248512740	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR2T27	403239	hgsc.bcm.edu	37	1	248813651	248813653	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	AGA	AGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PARN	5073	hgsc.bcm.edu	37	16	14649545	14649545	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52620525	52620525	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDH15	65217	hgsc.bcm.edu	37	10	55616967	55616967	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PEG3	5178	hgsc.bcm.edu	37	19	57329187	57329187	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PKHD1L1	93035	hgsc.bcm.edu	37	8	110453047	110453047	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLIN2	123	hgsc.bcm.edu	37	9	19116637	19116637	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLXNA2	5362	hgsc.bcm.edu	37	1	208215470	208215470	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLXNC1	10154	hgsc.bcm.edu	37	12	94673352	94673352	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PPFIBP2	8495	hgsc.bcm.edu	37	11	7661048	7661050	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	CTC	CTC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PRSS45	377047	hgsc.bcm.edu	37	3	46783933	46783933	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RAB27A	5873	hgsc.bcm.edu	37	15	55520900	55520900	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RBM27	54439	hgsc.bcm.edu	37	5	145664252	145664252	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RIOK3	8780	hgsc.bcm.edu	37	18	21043937	21043937	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RPL34	6164	hgsc.bcm.edu	37	4	109543328	109543328	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC13A4	26266	hgsc.bcm.edu	37	7	135370372	135370372	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TCP11	6954	hgsc.bcm.edu	37	6	35087098	35087098	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10188203	10188205	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-AK-3458-01A-01D-1501-10	TCGA-AK-3458-10A-01D-1501-10	CTT	CTT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
