Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ALDH3B2	222	hgsc.bcm.edu	37	11	67431199	67431199	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
AOX1	316	hgsc.bcm.edu	37	2	201474078	201474078	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP1A3	478	hgsc.bcm.edu	37	19	42473672	42473672	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BCAM	4059	hgsc.bcm.edu	37	19	45322915	45322915	+	Silent	SNP	T	T	A	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C1orf216	127703	hgsc.bcm.edu	37	1	36181451	36181451	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CARD8	22900	hgsc.bcm.edu	37	19	48715114	48715114	+	Silent	SNP	C	C	A	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CFTR	1080	hgsc.bcm.edu	37	7	117188850	117188850	+	Silent	SNP	G	G	T	rs79074685	unknown	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CNOT4	4850	hgsc.bcm.edu	37	7	135095315	135095315	+	Silent	SNP	A	A	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
COPS6	10980	hgsc.bcm.edu	37	7	99689085	99689086	+	Frame_Shift_Del	DEL	CT	CT	-	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	CT	CT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CPA4	51200	hgsc.bcm.edu	37	7	129950772	129950772	+	Silent	SNP	G	G	A	rs113746394	unknown	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CSNK2A2	1459	hgsc.bcm.edu	37	16	58220677	58220677	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH12	201625	hgsc.bcm.edu	37	3	57389197	57389197	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DNAH8	1769	hgsc.bcm.edu	37	6	38997960	38997960	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DPY19L1	23333	hgsc.bcm.edu	37	7	35057542	35057542	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FANCM	57697	hgsc.bcm.edu	37	14	45658098	45658098	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FAT3	120114	hgsc.bcm.edu	37	11	92600266	92600266	+	Silent	SNP	G	G	A	rs75649640	unknown	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GUSB	2990	hgsc.bcm.edu	37	7	65441161	65441161	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HUWE1	10075	hgsc.bcm.edu	37	X	53634498	53634498	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LIPC	3990	hgsc.bcm.edu	37	15	58837975	58837975	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LRRC66	339977	hgsc.bcm.edu	37	4	52862202	52862202	+	Missense_Mutation	SNP	T	T	G	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NT5DC3	51559	hgsc.bcm.edu	37	12	104171775	104171775	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OTOA	146183	hgsc.bcm.edu	37	16	21712268	21712268	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PPP1R9B	84687	hgsc.bcm.edu	37	17	48226734	48226734	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PVRL3	25945	hgsc.bcm.edu	37	3	110831084	110831084	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RCC2	55920	hgsc.bcm.edu	37	1	17743003	17743003	+	Silent	SNP	T	T	A	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RPS6KA3	6197	hgsc.bcm.edu	37	X	20227429	20227429	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SPG21	51324	hgsc.bcm.edu	37	15	65266968	65266968	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SSPO	23145	hgsc.bcm.edu	37	7	149502986	149502986	+	Silent	SNP	A	A	G	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SYNPO2	171024	hgsc.bcm.edu	37	4	119948178	119948178	+	Silent	SNP	C	C	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TLR5	7100	hgsc.bcm.edu	37	1	223284977	223284977	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TMEM45B	120224	hgsc.bcm.edu	37	11	129728512	129728512	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TTC13	79573	hgsc.bcm.edu	37	1	231064691	231064691	+	Silent	SNP	G	G	C	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UBTF	7343	hgsc.bcm.edu	37	17	42286826	42286826	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
UGP2	7360	hgsc.bcm.edu	37	2	64083539	64083539	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZC3H12A	80149	hgsc.bcm.edu	37	1	37949076	37949076	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZFYVE27	118813	hgsc.bcm.edu	37	10	99510142	99510142	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-AK-3461-01A-02D-1361-10	TCGA-AK-3461-10A-01D-1361-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
