Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AKAP9	10142	hgsc.bcm.edu	37	7	91630395	91630395	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATF6B	1388	hgsc.bcm.edu	37	6	32084267	32084267	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP8A1	10396	hgsc.bcm.edu	37	4	42580382	42580382	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BAI3	577	hgsc.bcm.edu	37	6	69703743	69703743	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CTTNBP2	83992	hgsc.bcm.edu	37	7	117417736	117417736	+	Silent	SNP	A	A	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DCHS2	54798	hgsc.bcm.edu	37	4	155156296	155156296	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DGKH	160851	hgsc.bcm.edu	37	13	42773767	42773767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DKKL1	27120	hgsc.bcm.edu	37	19	49869088	49869088	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DMXL1	1657	hgsc.bcm.edu	37	5	118485176	118485176	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAJC10	54431	hgsc.bcm.edu	37	2	183623959	183623959	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBXO22	26263	hgsc.bcm.edu	37	15	76222396	76222396	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBXW7	55294	hgsc.bcm.edu	37	4	153253788	153253788	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FOLR4	390243	hgsc.bcm.edu	37	11	94040366	94040366	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GABRA4	2557	hgsc.bcm.edu	37	4	46994943	46994943	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GAL3ST2	64090	hgsc.bcm.edu	37	2	242741353	242741353	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GBF1	8729	hgsc.bcm.edu	37	10	104111129	104111129	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GC	2638	hgsc.bcm.edu	37	4	72620716	72620716	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPCPD1	56261	hgsc.bcm.edu	37	20	5559074	5559074	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GRIA1	2890	hgsc.bcm.edu	37	5	153181983	153181983	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HAUS3	79441	hgsc.bcm.edu	37	4	2242485	2242485	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HEATR7B2	133558	hgsc.bcm.edu	37	5	41012760	41012760	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IL1F7	.	hgsc.bcm.edu	37	2	113675238	113675238	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IPO8	10526	hgsc.bcm.edu	37	12	30792517	30792517	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IQGAP2	10788	hgsc.bcm.edu	37	5	75866461	75866461	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IQUB	154865	hgsc.bcm.edu	37	7	123101473	123101473	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ITGA8	8516	hgsc.bcm.edu	37	10	15726085	15726085	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIAA1279	26128	hgsc.bcm.edu	37	10	70748679	70748679	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIT	3815	hgsc.bcm.edu	37	4	55593599	55593599	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLK10	5655	hgsc.bcm.edu	37	19	51518692	51518692	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LCN12	286256	hgsc.bcm.edu	37	9	139849846	139849846	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRP1	4035	hgsc.bcm.edu	37	12	57554852	57554852	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MAGEB4	4115	hgsc.bcm.edu	37	X	30260747	30260747	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MKI67	4288	hgsc.bcm.edu	37	10	129911780	129911780	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MRPS5	64969	hgsc.bcm.edu	37	2	95773989	95773989	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC16	94025	hgsc.bcm.edu	37	19	9089041	9089041	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NCAPG	64151	hgsc.bcm.edu	37	4	17826669	17826670	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NEFH	4744	hgsc.bcm.edu	37	22	29885575	29885576	+	In_Frame_Ins	INS	-	-	TGAGAAGGCCAAGTCCCC	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NF1	4763	hgsc.bcm.edu	37	17	29560133	29560133	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NPNT	255743	hgsc.bcm.edu	37	4	106863727	106863727	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR5AS1	219447	hgsc.bcm.edu	37	11	55798443	55798443	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PKD1L3	342372	hgsc.bcm.edu	37	16	72033601	72033601	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PKP2	5318	hgsc.bcm.edu	37	12	32975511	32975511	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PSME4	23198	hgsc.bcm.edu	37	2	54122198	54122198	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RUNX1T1	862	hgsc.bcm.edu	37	8	92988164	92988164	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SCAPER	49855	hgsc.bcm.edu	37	15	77059317	77059317	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEMA3E	9723	hgsc.bcm.edu	37	7	83021907	83021907	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SENP8	123228	hgsc.bcm.edu	37	15	72432489	72432489	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETD3	84193	hgsc.bcm.edu	37	14	99932102	99932102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLCO1C1	53919	hgsc.bcm.edu	37	12	20890062	20890062	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SNX14	57231	hgsc.bcm.edu	37	6	86303401	86303401	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SPTBN1	6711	hgsc.bcm.edu	37	2	54871514	54871514	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TCF20	6942	hgsc.bcm.edu	37	22	42607162	42607162	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMPRSS15	5651	hgsc.bcm.edu	37	21	19744604	19744604	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TP53	7157	hgsc.bcm.edu	37	17	7577560	7577560	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TPRG1L	127262	hgsc.bcm.edu	37	1	3545080	3545080	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TYRP1	7306	hgsc.bcm.edu	37	9	12698513	12698513	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VHL	7428	hgsc.bcm.edu	37	3	10191501	10191501	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
XPNPEP1	7511	hgsc.bcm.edu	37	10	111630549	111630549	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZFY	7544	hgsc.bcm.edu	37	Y	2829144	2829144	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZMYM1	79830	hgsc.bcm.edu	37	1	35580688	35580688	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZSCAN16	80345	hgsc.bcm.edu	37	6	28094583	28094583	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZSCAN29	146050	hgsc.bcm.edu	37	15	43653850	43653850	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-4706-01A-01D-1501-10	TCGA-B0-4706-11A-02D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
