Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABRA	137735	broad.mit.edu	37	8	107773573	107773573	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ABRA	137735	broad.mit.edu	37	8	107773580	107773580	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ABRA	137735	broad.mit.edu	37	8	107773583	107773583	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131323842	131323842	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKRD50	57182	broad.mit.edu	37	4	125590998	125590998	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ARHGAP30	257106	broad.mit.edu	37	1	161018362	161018362	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASGR2	433	broad.mit.edu	37	17	7010447	7010447	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP13A5	344905	broad.mit.edu	37	3	193007828	193007828	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BAP1	8314	broad.mit.edu	37	3	52439306	52439306	+	Silent	SNP	A	C	C	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40075845	40075845	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CALY	50632	broad.mit.edu	37	10	135141463	135141463	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CNTN2	6900	broad.mit.edu	37	1	205041696	205041696	+	Silent	SNP	A	C	C	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CSNK1G2	1455	broad.mit.edu	37	19	1980183	1980183	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DHX36	170506	broad.mit.edu	37	3	154018456	154018456	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DISP1	84976	broad.mit.edu	37	1	223178568	223178568	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DMPK	1760	broad.mit.edu	37	19	46281778	46281778	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124371778	124371778	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EBNA1BP2	10969	broad.mit.edu	37	1	43637236	43637236	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5407705	5407705	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152324635	152324635	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41064635	41064635	+	Silent	SNP	G	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HEXDC	284004	broad.mit.edu	37	17	80394586	80394586	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HLA-E	3133	broad.mit.edu	37	6	30457316	30457316	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IGSF10	285313	broad.mit.edu	37	3	151165112	151165112	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IRAK1	3654	broad.mit.edu	37	X	153283528	153283528	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70681442	70681442	+	Silent	SNP	C	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRT1	3848	broad.mit.edu	37	12	53069236	53069256	+	In_Frame_Del	DEL	TAGCTGCTACCTCCGGAGCCA	-	-	rs77846840;rs61226348	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	TAGCTGCTACCTCCGGAGCCA	TAGCTGCTACCTCCGGAGCCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LARP4	113251	broad.mit.edu	37	12	50821653	50821653	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LETMD1	25875	broad.mit.edu	37	12	51450212	51450212	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138713618	138713618	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3304667	3304667	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MFSD1	64747	broad.mit.edu	37	3	158523240	158523240	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MVP	9961	broad.mit.edu	37	16	29853112	29853112	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NCOR1	9611	broad.mit.edu	37	17	15964798	15964798	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21250960	21250960	+	Silent	SNP	C	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NOP14	8602	broad.mit.edu	37	4	2955338	2955338	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NRBP1	29959	broad.mit.edu	37	2	27663740	27663740	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50724852	50724852	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR51F1	256892	broad.mit.edu	37	11	4790883	4790883	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ORC4L	5000	broad.mit.edu	37	2	148693257	148693257	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52620674	52620674	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHA13	56136	broad.mit.edu	37	5	140263639	140263639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140774124	140774124	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDP2	57546	broad.mit.edu	37	16	66919397	66919397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1664726	1664726	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PYCR2	29920	broad.mit.edu	37	1	226109762	226109762	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145610355	145610357	+	Missense_Mutation	Complex_substitution	TNA	CNT	CNT	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	TNA	TNA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30339184	30339184	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67776858	67776858	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPTBN1	6711	broad.mit.edu	37	2	54883108	54883108	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75427933	75427933	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70613248	70613248	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TERT	7015	broad.mit.edu	37	5	1255447	1255447	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10191470	10191470	+	Splice_Site	SNP	G	A	A	rs5030817	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF480	147657	broad.mit.edu	37	19	52825079	52825079	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF646	9726	broad.mit.edu	37	16	31087733	31087733	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134427942	134427942	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23543382	23543382	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-B0-4842-01	TCGA-B0-4842-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
