Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCC9	10060	hgsc.bcm.edu	37	12	22068794	22068794	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ACTL8	81569	hgsc.bcm.edu	37	1	18149661	18149661	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ADAM33	80332	hgsc.bcm.edu	37	20	3655259	3655259	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ALDH2	217	hgsc.bcm.edu	37	12	112221085	112221085	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ALK	238	hgsc.bcm.edu	37	2	29541192	29541192	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARSI	340075	hgsc.bcm.edu	37	5	149677720	149677720	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ASNSD1	54529	hgsc.bcm.edu	37	2	190532647	190532647	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATP13A5	344905	hgsc.bcm.edu	37	3	193052840	193052840	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
B4GALNT3	283358	hgsc.bcm.edu	37	12	657232	657232	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C5orf44	80006	hgsc.bcm.edu	37	5	64960063	64960063	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CABIN1	23523	hgsc.bcm.edu	37	22	24563174	24563174	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CD207	50489	hgsc.bcm.edu	37	2	71060814	71060814	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CLEC4C	170482	hgsc.bcm.edu	37	12	7890118	7890118	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CTNNA2	1496	hgsc.bcm.edu	37	2	80097001	80097001	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DIP2C	22982	hgsc.bcm.edu	37	10	375379	375379	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ERBB4	2066	hgsc.bcm.edu	37	2	212252686	212252686	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM5C	339479	hgsc.bcm.edu	37	1	190067353	190067353	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBN3	84467	hgsc.bcm.edu	37	19	8148162	8148162	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FGFR4	2264	hgsc.bcm.edu	37	5	176520705	176520705	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FLG2	388698	hgsc.bcm.edu	37	1	152323500	152323500	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FMN2	56776	hgsc.bcm.edu	37	1	240370966	240370998	+	In_Frame_Del	DEL	GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA	GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA	-	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA	GCAATACCCCCTCCGCCCCCTCTTCCCGGGGCA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FMR1NB	158521	hgsc.bcm.edu	37	X	147090193	147090193	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FZD4	8322	hgsc.bcm.edu	37	11	86663464	86663464	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GARNL3	84253	hgsc.bcm.edu	37	9	130095307	130095307	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GCN1L1	10985	hgsc.bcm.edu	37	12	120574466	120574466	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GRWD1	83743	hgsc.bcm.edu	37	19	48949376	48949377	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IFI27L2	83982	hgsc.bcm.edu	37	14	94594972	94594972	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR52J3	119679	hgsc.bcm.edu	37	11	5068523	5068523	+	Silent	SNP	A	A	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PBRM1	55193	hgsc.bcm.edu	37	3	52668817	52668817	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCYOX1L	78991	hgsc.bcm.edu	37	5	148742273	148742273	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDK3	5165	hgsc.bcm.edu	37	X	24537120	24537120	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PGK1	5230	hgsc.bcm.edu	37	X	77373615	77373615	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PTPN14	5784	hgsc.bcm.edu	37	1	214549669	214549669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RASA2	5922	hgsc.bcm.edu	37	3	141328789	141328789	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RB1	5925	hgsc.bcm.edu	37	13	48936985	48936985	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RB1	5925	hgsc.bcm.edu	37	13	49030388	49030388	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ROS1	6098	hgsc.bcm.edu	37	6	117647553	117647553	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETD2	29072	hgsc.bcm.edu	37	3	47164613	47164613	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SETD6	79918	hgsc.bcm.edu	37	16	58550759	58550759	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC12A2	6558	hgsc.bcm.edu	37	5	127484533	127484533	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC38A1	81539	hgsc.bcm.edu	37	12	46591709	46591709	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STAT1	6772	hgsc.bcm.edu	37	2	191864399	191864399	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TAF5	6877	hgsc.bcm.edu	37	10	105139365	105139365	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ULBP2	80328	hgsc.bcm.edu	37	6	150267506	150267506	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
XCL1	6375	hgsc.bcm.edu	37	1	168550370	168550370	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
XCL1	6375	hgsc.bcm.edu	37	1	168550371	168550371	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B0-5399-01A-01D-1501-10	TCGA-B0-5399-10A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
