Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AGRN	375790	hgsc.bcm.edu	37	1	981443	981443	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATAD2B	54454	hgsc.bcm.edu	37	2	24092544	24092544	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATAD5	79915	hgsc.bcm.edu	37	17	29219769	29219769	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C12orf51	283450	hgsc.bcm.edu	37	12	112650409	112650409	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C14orf109	26175	hgsc.bcm.edu	37	14	93652729	93652729	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CASC1	55259	hgsc.bcm.edu	37	12	25347862	25347862	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CASP7	840	hgsc.bcm.edu	37	10	115489084	115489084	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDH12	1010	hgsc.bcm.edu	37	5	21751935	21751935	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DCST1	149095	hgsc.bcm.edu	37	1	155014062	155014062	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DENND5A	23258	hgsc.bcm.edu	37	11	9225842	9225842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EFCAB5	374786	hgsc.bcm.edu	37	17	28386632	28386632	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EGFR	1956	hgsc.bcm.edu	37	7	55241678	55241678	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM200A	221786	hgsc.bcm.edu	37	7	99145777	99145777	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBLN2	2199	hgsc.bcm.edu	37	3	13612493	13612493	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FEM1B	10116	hgsc.bcm.edu	37	15	68582267	68582267	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GABRR2	2570	hgsc.bcm.edu	37	6	89974135	89974135	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GCN1L1	10985	hgsc.bcm.edu	37	12	120582805	120582805	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GOLGB1	2804	hgsc.bcm.edu	37	3	121417605	121417605	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPR143	4935	hgsc.bcm.edu	37	X	9711619	9711619	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GRIA4	2893	hgsc.bcm.edu	37	11	105782614	105782614	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HIP1	3092	hgsc.bcm.edu	37	7	75184830	75184830	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF3B	9371	hgsc.bcm.edu	37	20	30898421	30898421	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRT6B	3854	hgsc.bcm.edu	37	12	52843335	52843335	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MYO3A	53904	hgsc.bcm.edu	37	10	26377305	26377305	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NARG2	79664	hgsc.bcm.edu	37	15	60734670	60734670	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
P2RY10	27334	hgsc.bcm.edu	37	X	78216070	78216070	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLCD4	84812	hgsc.bcm.edu	37	2	219498453	219498453	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RDM1	201299	hgsc.bcm.edu	37	17	34257122	34257122	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RPS26	6231	hgsc.bcm.edu	37	12	56436231	56436231	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SBNO1	55206	hgsc.bcm.edu	37	12	123804981	123804981	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC17A1	6568	hgsc.bcm.edu	37	6	25830753	25830753	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TAF7L	54457	hgsc.bcm.edu	37	X	100524198	100524198	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
USP4	7375	hgsc.bcm.edu	37	3	49373006	49373006	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDR87	83889	hgsc.bcm.edu	37	19	38380084	38380084	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZCCHC13	389874	hgsc.bcm.edu	37	X	73524500	73524500	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZIM3	114026	hgsc.bcm.edu	37	19	57646742	57646742	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF350	59348	hgsc.bcm.edu	37	19	52469415	52469415	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZSCAN18	65982	hgsc.bcm.edu	37	19	58601748	58601748	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BP-4162-01A-02D-1386-10	TCGA-BP-4162-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
