Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCB11	8647	hgsc.bcm.edu	37	2	169791766	169791766	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ASPM	259266	hgsc.bcm.edu	37	1	197060067	197060067	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BAP1	8314	hgsc.bcm.edu	37	3	52439876	52439876	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BCAS2	10286	hgsc.bcm.edu	37	1	115123970	115123970	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C22orf30	253143	hgsc.bcm.edu	37	22	32108234	32108234	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C5orf42	65250	hgsc.bcm.edu	37	5	37226660	37226660	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CCDC47	57003	hgsc.bcm.edu	37	17	61829787	61829787	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CD300LG	146894	hgsc.bcm.edu	37	17	41930293	41930293	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CDKN2A	1029	hgsc.bcm.edu	37	9	21970901	21970901	+	Missense_Mutation	SNP	C	C	T	rs45476696	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CSPP1	79848	hgsc.bcm.edu	37	8	68102916	68102916	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAH17	8632	hgsc.bcm.edu	37	17	76496393	76496393	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DNAJC17	55192	hgsc.bcm.edu	37	15	41065992	41065992	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EVL	51466	hgsc.bcm.edu	37	14	100589913	100589913	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GCFC1	94104	hgsc.bcm.edu	37	21	34117133	34117133	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HEATR3	55027	hgsc.bcm.edu	37	16	50120249	50120249	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
HIP1	3092	hgsc.bcm.edu	37	7	75187543	75187543	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IFI30	10437	hgsc.bcm.edu	37	19	18286140	18286140	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IL1F7	.	hgsc.bcm.edu	37	2	113670643	113670643	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
IVD	3712	hgsc.bcm.edu	37	15	40707145	40707145	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KCNA7	3743	hgsc.bcm.edu	37	19	49573363	49573365	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	GGA	GGA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KDM4A	9682	hgsc.bcm.edu	37	1	44154664	44154664	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KIF14	9928	hgsc.bcm.edu	37	1	200586751	200586751	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLF3	51274	hgsc.bcm.edu	37	4	38691420	38691420	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KRT15	3866	hgsc.bcm.edu	37	17	39673185	39673185	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LAMB4	22798	hgsc.bcm.edu	37	7	107717486	107717486	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LRRK1	79705	hgsc.bcm.edu	37	15	101601457	101601457	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MLX	6945	hgsc.bcm.edu	37	17	40721610	40721610	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MPV17L	255027	hgsc.bcm.edu	37	16	15501819	15501819	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MRPL9	65005	hgsc.bcm.edu	37	1	151732588	151732588	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MRPS7	51081	hgsc.bcm.edu	37	17	73258639	73258639	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NF2	4771	hgsc.bcm.edu	37	22	30032762	30032762	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NIPBL	25836	hgsc.bcm.edu	37	5	37022178	37022178	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR13C8	138802	hgsc.bcm.edu	37	9	107332146	107332146	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR56A4	120793	hgsc.bcm.edu	37	11	6023936	6023936	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OTOL1	131149	hgsc.bcm.edu	37	3	161221212	161221212	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCNX	22990	hgsc.bcm.edu	37	14	71571970	71571970	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PGD	5226	hgsc.bcm.edu	37	1	10477468	10477468	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLS3	5358	hgsc.bcm.edu	37	X	114864223	114864223	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PSMA3	5684	hgsc.bcm.edu	37	14	58737146	58737146	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RARA	5914	hgsc.bcm.edu	37	17	38508302	38508302	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RB1CC1	9821	hgsc.bcm.edu	37	8	53555087	53555087	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RHPN2	85415	hgsc.bcm.edu	37	19	33517507	33517507	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RIC8A	60626	hgsc.bcm.edu	37	11	209895	209897	+	In_Frame_Del	DEL	CCC	CCC	-	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	CCC	CCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SEMA7A	8482	hgsc.bcm.edu	37	15	74711202	74711202	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC25A45	283130	hgsc.bcm.edu	37	11	65144051	65144051	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SULT2B1	6820	hgsc.bcm.edu	37	19	49096055	49096055	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYTL3	94120	hgsc.bcm.edu	37	6	159184435	159184435	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TENC1	23371	hgsc.bcm.edu	37	12	53448982	53448982	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TEX264	51368	hgsc.bcm.edu	37	3	51708346	51708346	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TMEM111	55831	hgsc.bcm.edu	37	3	10005822	10005822	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TOPBP1	11073	hgsc.bcm.edu	37	3	133362056	133362056	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WDR35	57539	hgsc.bcm.edu	37	2	20153652	20153652	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZFHX3	463	hgsc.bcm.edu	37	16	72992626	72992626	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZIK1	284307	hgsc.bcm.edu	37	19	58101848	58101848	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF717	100131827	hgsc.bcm.edu	37	3	75786761	75786761	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BP-4163-01A-02D-1386-10	TCGA-BP-4163-11A-01D-1251-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
