Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
APBA3	9546	hgsc.bcm.edu	37	19	3754020	3754020	+	Silent	SNP	G	G	C	rs61731066	unknown	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ARID3B	10620	hgsc.bcm.edu	37	15	74836314	74836316	+	In_Frame_Del	DEL	CAA	CAA	-	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	CAA	CAA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ASB11	140456	hgsc.bcm.edu	37	X	15320875	15320875	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ATP8B4	79895	hgsc.bcm.edu	37	15	50154547	50154547	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
BCAS1	8537	hgsc.bcm.edu	37	20	52583461	52583461	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C2orf66	401027	hgsc.bcm.edu	37	2	197674050	197674050	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
C4orf29	80167	hgsc.bcm.edu	37	4	128949871	128949871	+	Missense_Mutation	SNP	A	A	G	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CDK5RAP1	51654	hgsc.bcm.edu	37	20	31946927	31946927	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHML	1122	hgsc.bcm.edu	37	1	241798250	241798250	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
CHN1	1123	hgsc.bcm.edu	37	2	175742775	175742775	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DDX23	9416	hgsc.bcm.edu	37	12	49233687	49233687	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
DDX50	79009	hgsc.bcm.edu	37	10	70673216	70673216	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
EPC2	26122	hgsc.bcm.edu	37	2	149520266	149520266	+	Missense_Mutation	SNP	A	A	C	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
FNDC3B	64778	hgsc.bcm.edu	37	3	172115178	172115178	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
GEMIN5	25929	hgsc.bcm.edu	37	5	154278063	154278063	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HARS2	23438	hgsc.bcm.edu	37	5	140076951	140076951	+	Missense_Mutation	SNP	G	G	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
HRAS	3265	hgsc.bcm.edu	37	11	534259	534259	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
JPH1	56704	hgsc.bcm.edu	37	8	75157095	75157095	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KIDINS220	57498	hgsc.bcm.edu	37	2	8891618	8891618	+	Silent	SNP	G	G	C	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
KRT86	3892	hgsc.bcm.edu	37	12	52695702	52695703	+	Frame_Shift_Ins	INS	-	-	G	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
LAX1	54900	hgsc.bcm.edu	37	1	203741246	203741246	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MC2R	4158	hgsc.bcm.edu	37	18	13885200	13885200	+	Silent	SNP	G	G	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MMP27	64066	hgsc.bcm.edu	37	11	102564646	102564646	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
MORC2	22880	hgsc.bcm.edu	37	22	31346363	31346363	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NECAP2	55707	hgsc.bcm.edu	37	1	16775619	16775619	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NFE2L2	4780	hgsc.bcm.edu	37	2	178096052	178096052	+	Nonsense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
NUP160	23279	hgsc.bcm.edu	37	11	47857324	47857324	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
OGG1	4968	hgsc.bcm.edu	37	3	9798842	9798842	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PAAF1	80227	hgsc.bcm.edu	37	11	73620605	73620605	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PDZD8	118987	hgsc.bcm.edu	37	10	119043260	119043260	+	Missense_Mutation	SNP	T	T	C	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PKHD1	5314	hgsc.bcm.edu	37	6	51890113	51890113	+	Silent	SNP	G	G	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PKIA	5569	hgsc.bcm.edu	37	8	79510666	79510666	+	Missense_Mutation	SNP	G	G	C	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
PLCD4	84812	hgsc.bcm.edu	37	2	219500531	219500531	+	Missense_Mutation	SNP	C	C	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RET	5979	hgsc.bcm.edu	37	10	43608353	43608353	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
RFC2	5982	hgsc.bcm.edu	37	7	73661019	73661019	+	Missense_Mutation	SNP	T	T	A	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SI	6476	hgsc.bcm.edu	37	3	164777762	164777762	+	Missense_Mutation	SNP	A	A	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SLC4A4	8671	hgsc.bcm.edu	37	4	72313420	72313420	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
SORCS1	114815	hgsc.bcm.edu	37	10	108447986	108447986	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
STARD9	57519	hgsc.bcm.edu	37	15	42977628	42977628	+	Silent	SNP	T	T	C	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TBC1D1	23216	hgsc.bcm.edu	37	4	38029477	38029477	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TERT	7015	hgsc.bcm.edu	37	5	1254527	1254527	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TGM1	7051	hgsc.bcm.edu	37	14	24727575	24727575	+	Missense_Mutation	SNP	C	C	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
TRIP10	9322	hgsc.bcm.edu	37	19	6750048	6750048	+	Missense_Mutation	SNP	C	C	G	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
WDR76	79968	hgsc.bcm.edu	37	15	44136119	44136119	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
XPNPEP1	7511	hgsc.bcm.edu	37	10	111643872	111643874	+	In_Frame_Del	DEL	GTG	GTG	-	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	GTG	GTG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF407	55628	hgsc.bcm.edu	37	18	72345311	72345311	+	Missense_Mutation	SNP	G	G	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
ZNF598	90850	hgsc.bcm.edu	37	16	2052325	2052325	+	Silent	SNP	C	C	T	novel	.	TCGA-BP-4768-01A-01D-1366-10	TCGA-BP-4768-11A-01D-1366-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	SOLID
