Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AFF3	3899	hgsc.bcm.edu	37	2	100625295	100625295	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARFGEF2	10564	hgsc.bcm.edu	37	20	47605035	47605035	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ARFGEF2	10564	hgsc.bcm.edu	37	20	47605057	47605057	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ATM	472	hgsc.bcm.edu	37	11	108180947	108180947	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BLNK	29760	hgsc.bcm.edu	37	10	97976478	97976478	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
BRCA1	672	hgsc.bcm.edu	37	17	41244521	41244521	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
C5	727	hgsc.bcm.edu	37	9	123745015	123745015	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CD180	4064	hgsc.bcm.edu	37	5	66478939	66478939	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CEP110	11064	hgsc.bcm.edu	37	9	123877469	123877469	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
CYP4F2	8529	hgsc.bcm.edu	37	19	15989682	15989682	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
DMRT2	10655	hgsc.bcm.edu	37	9	1056689	1056689	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
EYS	346007	hgsc.bcm.edu	37	6	65655781	65655781	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FAM46D	169966	hgsc.bcm.edu	37	X	79698170	79698170	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FBXW7	55294	hgsc.bcm.edu	37	4	153247226	153247226	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
FREM1	158326	hgsc.bcm.edu	37	9	14748599	14748599	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GPR15	2838	hgsc.bcm.edu	37	3	98251797	98251797	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
GRIN2B	2904	hgsc.bcm.edu	37	12	13761600	13761600	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
KLHL7	55975	hgsc.bcm.edu	37	7	23207478	23207478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
LGALS8	3964	hgsc.bcm.edu	37	1	236700861	236700861	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MKI67IP	84365	hgsc.bcm.edu	37	2	122488643	122488643	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MTUS2	23281	hgsc.bcm.edu	37	13	30062042	30062042	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC16	94025	hgsc.bcm.edu	37	19	9047434	9047434	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
MUC16	94025	hgsc.bcm.edu	37	19	9074345	9074345	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NAALADL1	10004	hgsc.bcm.edu	37	11	64822097	64822097	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NCF1	653361	hgsc.bcm.edu	37	7	74191683	74191683	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
NF1	4763	hgsc.bcm.edu	37	17	29548876	29548876	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR10G7	390265	hgsc.bcm.edu	37	11	123909632	123909632	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR1S1	219959	hgsc.bcm.edu	37	11	57982325	57982325	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR2AG1	144125	hgsc.bcm.edu	37	11	6806389	6806389	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR2T4	127074	hgsc.bcm.edu	37	1	248525734	248525734	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
OR4A5	81318	hgsc.bcm.edu	37	11	51412339	51412339	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDHA10	56139	hgsc.bcm.edu	37	5	140236094	140236094	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PCDHGB7	56099	hgsc.bcm.edu	37	5	140798186	140798186	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PDE8A	5151	hgsc.bcm.edu	37	15	85659326	85659326	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
PLEC	5339	hgsc.bcm.edu	37	8	144992443	144992443	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RB1	5925	hgsc.bcm.edu	37	13	48941650	48941650	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
RB1	5925	hgsc.bcm.edu	37	13	49030485	49030485	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SERPINA3	12	hgsc.bcm.edu	37	14	95080851	95080851	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SERPINB13	5275	hgsc.bcm.edu	37	18	61255920	61255920	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SLC12A9	56996	hgsc.bcm.edu	37	7	100463346	100463346	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SMARCAL1	50485	hgsc.bcm.edu	37	2	217285020	217285020	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SRBD1	55133	hgsc.bcm.edu	37	2	45620107	45620107	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
STAR	6770	hgsc.bcm.edu	37	8	38001871	38001871	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
SYNE1	23345	hgsc.bcm.edu	37	6	152809562	152809562	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TBC1D2	55357	hgsc.bcm.edu	37	9	100963824	100963824	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TIMM17B	10245	hgsc.bcm.edu	37	X	48751506	48751506	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TNR	7143	hgsc.bcm.edu	37	1	175323627	175323627	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
TP53	7157	hgsc.bcm.edu	37	17	7577498	7577498	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ULK3	25989	hgsc.bcm.edu	37	15	75134629	75134629	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
VPRBP	9730	hgsc.bcm.edu	37	3	51455599	51455599	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
WNK4	65266	hgsc.bcm.edu	37	17	40945664	40945664	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZDHHC15	158866	hgsc.bcm.edu	37	X	74649785	74649785	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF141	7700	hgsc.bcm.edu	37	4	367075	367075	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
ZNF99	7652	hgsc.bcm.edu	37	19	22940439	22940439	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BP-4770-01A-01D-1501-10	TCGA-BP-4770-11A-01D-1501-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.	.	.	Illumina
