Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACAN	176	broad.mit.edu	37	15	89391157	89391157	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AKNAD1	254268	broad.mit.edu	37	1	109358901	109358901	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241439472	241439472	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ASL	435	broad.mit.edu	37	7	65557847	65557847	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATP2A2	488	broad.mit.edu	37	12	110734534	110734534	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142177892	142177892	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30847243	30847243	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CACYBP	27101	broad.mit.edu	37	1	174973869	174973869	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CES1	1066	broad.mit.edu	37	16	55855371	55855371	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CILP	8483	broad.mit.edu	37	15	65491129	65491129	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COMMD10	51397	broad.mit.edu	37	5	115423221	115423221	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
COPB2	9276	broad.mit.edu	37	3	139090593	139090593	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CUL7	9820	broad.mit.edu	37	6	43018715	43018715	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43156328	43156328	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DCTN1	1639	broad.mit.edu	37	2	74594532	74594532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11778481	11778481	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51265449	51265449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ESR2	2100	broad.mit.edu	37	14	64716381	64716381	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
EXOC3L	283849	broad.mit.edu	37	16	67219061	67219061	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GP6	51206	broad.mit.edu	37	19	55539166	55539166	+	Silent	SNP	T	A	A	rs115934645	by1000genomes	TCGA-BP-4965-01	TCGA-BP-4965-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HERC5	51191	broad.mit.edu	37	4	89383504	89383504	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91784679	91784679	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIST1H2BI	8346	broad.mit.edu	37	6	26273395	26273395	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12164458	12164458	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70866802	70866802	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KLK12	43849	broad.mit.edu	37	19	51532649	51532649	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123054258	123054258	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30680150	30680150	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MLKL	197259	broad.mit.edu	37	16	74725180	74725180	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MT1H	4496	broad.mit.edu	37	16	56704457	56704457	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9062202	9062202	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113549999	113549999	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NAT8	9027	broad.mit.edu	37	2	73868451	73868451	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OIP5	11339	broad.mit.edu	37	15	41624695	41624695	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
P2RX7	5027	broad.mit.edu	37	12	121570799	121570799	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32098517	32098517	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PGK1	5230	broad.mit.edu	37	X	77369583	77369583	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PNO1	56902	broad.mit.edu	37	2	68400546	68400546	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PNPLA8	50640	broad.mit.edu	37	7	108155244	108155244	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24202477	24202477	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKCD	5580	broad.mit.edu	37	3	53215262	53215262	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48762023	48762023	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48762043	48762043	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PTEN	5728	broad.mit.edu	37	10	89712006	89712006	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8420609	8420609	+	Silent	SNP	T	G	G	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78350219	78350219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15083538	15083538	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC26A1	10861	broad.mit.edu	37	4	982680	982680	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC47A1	55244	broad.mit.edu	37	17	19452976	19452976	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44876035	44876035	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30750345	30750345	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TH	7054	broad.mit.edu	37	11	2189843	2189843	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43782949	43782949	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TIPIN	54962	broad.mit.edu	37	15	66645153	66645153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TRPM5	29850	broad.mit.edu	37	11	2433463	2433463	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179658188	179658188	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188245	10188245	+	Missense_Mutation	SNP	G	T	T	rs104893830	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VILL	50853	broad.mit.edu	37	3	38038588	38038588	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZFPM1	161882	broad.mit.edu	37	16	88599110	88599110	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4965-01	TCGA-BP-4965-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
