Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACADM	34	broad.mit.edu	37	1	76205772	76205772	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACIN1	22985	broad.mit.edu	37	14	23549183	23549183	+	Missense_Mutation	SNP	T	A	A	rs112438189	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACOT7	11332	broad.mit.edu	37	1	6387379	6387379	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	970662	970662	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AP4B1	10717	broad.mit.edu	37	1	114439000	114439000	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AZU1	566	broad.mit.edu	37	19	830861	830861	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36946865	36946865	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C1orf65	164127	broad.mit.edu	37	1	223568377	223568377	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLCC1	23155	broad.mit.edu	37	1	109482394	109482394	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CRYGA	1418	broad.mit.edu	37	2	209025590	209025590	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101813771	101813771	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FTL	2512	broad.mit.edu	37	19	49468842	49468842	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GLDN	342035	broad.mit.edu	37	15	51696755	51696755	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HINFP	25988	broad.mit.edu	37	11	119004822	119004822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100481428	100481428	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KCTD11	147040	broad.mit.edu	37	17	7256827	7256827	+	Missense_Mutation	SNP	A	G	G	rs116850810	by1000genomes	TCGA-BP-4982-01	TCGA-BP-4982-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KRTAP10-3	386682	broad.mit.edu	37	21	45978577	45978577	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LUC7L3	51747	broad.mit.edu	37	17	48818534	48818534	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NDE1	54820	broad.mit.edu	37	16	15761201	15761202	+	Missense_Mutation	DNP	GC	AG	AG	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NDUFAF3	25915	broad.mit.edu	37	3	49059885	49059885	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NIT2	56954	broad.mit.edu	37	3	100059917	100059918	+	Missense_Mutation	DNP	GC	TT	TT	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR2H2	7932	broad.mit.edu	37	6	29556320	29556320	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PARP1	142	broad.mit.edu	37	1	226564845	226564845	+	Silent	SNP	G	C	C	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52702612	52702612	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28752200	28752200	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PSMF1	9491	broad.mit.edu	37	20	1144992	1144992	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RABEP1	9135	broad.mit.edu	37	17	5268432	5268432	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCAP	22937	broad.mit.edu	37	3	47455554	47455554	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SCRN2	90507	broad.mit.edu	37	17	45916363	45916363	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42531862	42531862	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SIGLEC7	27036	broad.mit.edu	37	19	51645712	51645712	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SKIV2L2	23517	broad.mit.edu	37	5	54618206	54618206	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SPAG8	26206	broad.mit.edu	37	9	35810979	35810979	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SUPV3L1	6832	broad.mit.edu	37	10	70967647	70967647	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SYT15	83849	broad.mit.edu	37	10	46968685	46968685	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TCP11	6954	broad.mit.edu	37	6	35086135	35086135	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBE2H	7328	broad.mit.edu	37	7	129592346	129592346	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBL4B	164153	broad.mit.edu	37	1	110655193	110655193	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10183794	10183794	+	Nonsense_Mutation	SNP	G	A	A	rs119103277	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
WHSC1L1	54904	broad.mit.edu	37	8	38173525	38173525	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
XPC	7508	broad.mit.edu	37	3	14188848	14188848	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZMYM3	9203	broad.mit.edu	37	X	70464304	70464304	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF283	284349	broad.mit.edu	37	19	44352476	44352476	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-4982-01	TCGA-BP-4982-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
