Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7568337	7568337	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48173117	48173117	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ACAD11	84129	broad.mit.edu	37	3	132323956	132323956	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AGFG2	3268	broad.mit.edu	37	7	100160277	100160277	+	Silent	SNP	C	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106960877	106960877	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56202373	56202373	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BCAR1	9564	broad.mit.edu	37	16	75269312	75269312	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BCL7A	605	broad.mit.edu	37	12	122492742	122492742	+	Silent	SNP	G	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32689778	32689778	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
C22orf9	23313	broad.mit.edu	37	22	45601731	45601731	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CCDC89	220388	broad.mit.edu	37	11	85396828	85396828	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDC123	8872	broad.mit.edu	37	10	12257826	12257826	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CDK17	5128	broad.mit.edu	37	12	96683053	96683053	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55907817	55907817	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
CLINT1	9685	broad.mit.edu	37	5	157232998	157232998	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DDX25	29118	broad.mit.edu	37	11	125786947	125786947	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11757612	11757612	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
FAM122C	159091	broad.mit.edu	37	X	133941717	133941717	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GALK2	2585	broad.mit.edu	37	15	49611861	49611861	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47424189	47424189	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
GSPT2	23708	broad.mit.edu	37	X	51488138	51488138	+	Silent	SNP	T	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HJURP	55355	broad.mit.edu	37	2	234749963	234749963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22168731	22168731	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128252517	128252517	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53228213	53228213	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
KIAA0802	23255	broad.mit.edu	37	18	8786001	8786001	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LAMB2	3913	broad.mit.edu	37	3	49160288	49160288	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
LRRK2	120892	broad.mit.edu	37	12	40702937	40702937	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MTHFR	4524	broad.mit.edu	37	1	11855302	11855302	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9067792	9067792	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
MYL9	10398	broad.mit.edu	37	20	35177531	35177531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
NTSR1	4923	broad.mit.edu	37	20	61341142	61341142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR10W1	81341	broad.mit.edu	37	11	58034733	58034733	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703464	55703464	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PAX3	5077	broad.mit.edu	37	2	223066808	223066808	+	Silent	SNP	C	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52595787	52595787	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2140477	2140477	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PPFIA1	8500	broad.mit.edu	37	11	70218604	70218604	+	Silent	SNP	T	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
PRDM13	59336	broad.mit.edu	37	6	100057184	100057184	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
RASSF5	83593	broad.mit.edu	37	1	206757773	206757773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SELE	6401	broad.mit.edu	37	1	169697008	169697008	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SETD2	29072	broad.mit.edu	37	3	47125380	47125380	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC23A3	151295	broad.mit.edu	37	2	220033819	220033819	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103120167	103120167	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152084099	152084099	+	Silent	SNP	A	G	G	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TNK1	8711	broad.mit.edu	37	17	7291994	7291994	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TPST1	8460	broad.mit.edu	37	7	65705680	65705680	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
TPX2	22974	broad.mit.edu	37	20	30365398	30365398	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
UBE2O	63893	broad.mit.edu	37	17	74392798	74392798	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23079995	23079995	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VHL	7428	broad.mit.edu	37	3	10188200	10188200	+	Missense_Mutation	SNP	C	T	T	rs5030811	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
VWF	7450	broad.mit.edu	37	12	6219564	6219564	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
YIF1B	90522	broad.mit.edu	37	19	38799931	38799931	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZCCHC3	85364	broad.mit.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	-	-	rs5742258	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	CGG	CGG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZMYM4	9202	broad.mit.edu	37	1	35857906	35857906	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF3	7551	broad.mit.edu	37	7	99668973	99668973	+	Silent	SNP	G	C	C	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
ZNF572	137209	broad.mit.edu	37	8	125989952	125989952	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-BP-5169-01	TCGA-BP-5169-01	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Unspecified	.	.	.	Illumina GAIIx
